Wall clock time and date at job start Wed Apr 1 2020 01:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47189 * 2 1 4 4 C 1.52997 * 109.47316 * 120.00132 * 2 1 3 5 5 C 1.52995 * 109.47565 * 174.84581 * 4 2 1 6 6 H 1.08999 * 109.47120 * 54.19976 * 5 4 2 7 7 C 1.53004 * 109.46894 * 294.20149 * 5 4 2 8 8 N 1.46495 * 109.47366 * 184.99941 * 7 5 4 9 9 C 1.36940 * 120.00347 * 180.02562 * 8 7 5 10 10 H 1.07999 * 119.99618 * 359.97438 * 9 8 7 11 11 C 1.38812 * 120.00167 * 179.97438 * 9 8 7 12 12 N 1.31624 * 119.99911 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00132 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46964 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47147 * 119.99832 * 13 11 9 16 16 H 1.48496 * 109.46920 * 240.00190 * 13 11 9 17 17 N 1.46503 * 109.47238 * 174.20515 * 5 4 2 18 18 C 1.34765 * 119.99770 * 272.15445 * 17 5 4 19 19 O 1.21283 * 120.00580 * 5.11116 * 18 17 5 20 20 C 1.50705 * 120.00194 * 185.10650 * 18 17 5 21 21 H 1.09006 * 115.53711 * 325.59194 * 20 18 17 22 22 C 1.53040 * 117.48581 * 180.02562 * 20 18 17 23 23 H 1.08997 * 119.41569 * 139.49666 * 22 20 18 24 24 C 1.53446 * 118.57745 * 343.84610 * 22 20 18 25 25 C 1.50969 * 107.03453 * 297.01936 * 24 22 20 26 26 C 1.38786 * 129.71742 * 179.64054 * 25 24 22 27 27 C 1.38019 * 120.30528 * 180.02562 * 26 25 24 28 28 C 1.38247 * 119.88170 * 359.97438 * 27 26 25 29 29 C 1.38014 * 119.88333 * 359.97438 * 28 27 26 30 30 C 1.37803 * 110.46191 * 359.68813 * 25 24 22 31 31 C 1.50938 * 110.48204 * 359.92654 * 30 25 24 32 32 H 1.09003 * 117.44558 * 220.72984 * 31 30 25 33 33 H 1.08999 * 109.47376 * 300.00059 * 1 2 3 34 34 H 1.09002 * 109.47291 * 60.00314 * 1 2 3 35 35 H 1.09001 * 109.47017 * 179.97438 * 1 2 3 36 36 H 1.08999 * 109.47376 * 239.99941 * 2 1 3 37 37 H 1.09004 * 109.47025 * 305.54541 * 3 2 1 38 38 H 1.09006 * 109.46884 * 65.53872 * 3 2 1 39 39 H 1.09001 * 109.47433 * 185.54093 * 3 2 1 40 40 H 1.09002 * 109.47060 * 54.84069 * 4 2 1 41 41 H 1.09007 * 109.47036 * 294.84709 * 4 2 1 42 42 H 1.09002 * 109.47297 * 305.00389 * 7 5 4 43 43 H 1.09007 * 109.47250 * 64.99741 * 7 5 4 44 44 H 0.97001 * 119.99962 * 0.02562 * 8 7 5 45 45 H 0.96999 * 119.99384 * 179.97438 * 12 11 9 46 46 H 0.97002 * 120.00031 * 92.16061 * 17 5 4 47 47 H 1.08997 * 109.92029 * 56.37263 * 24 22 20 48 48 H 1.09004 * 109.91693 * 177.47433 * 24 22 20 49 49 H 1.07996 * 119.84668 * 0.05383 * 26 25 24 50 50 H 1.08000 * 120.05473 * 179.97438 * 27 26 25 51 51 H 1.07999 * 120.05297 * 179.97438 * 28 27 26 52 52 H 1.08001 * 119.83890 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5645 -0.8345 1.1861 6 1 3.9963 0.1549 1.0353 7 6 3.9604 -1.7466 0.0232 8 7 5.4110 -1.9511 0.0350 9 6 5.9994 -2.7375 -0.9193 10 1 5.3939 -3.2073 -1.6802 11 6 7.3739 -2.9308 -0.9084 12 7 8.1117 -2.3586 0.0193 13 14 8.1765 -4.0042 -2.2096 14 1 7.1356 -4.5275 -3.1306 15 1 9.1580 -3.1985 -2.9795 16 1 8.8738 -5.1394 -1.5537 17 7 4.0646 -1.3994 2.4419 18 6 4.3516 -0.5878 3.4788 19 8 4.1093 0.5984 3.4057 20 6 4.9737 -1.1540 4.7292 21 1 4.6553 -2.1613 4.9979 22 6 5.2751 -0.1807 5.8712 23 1 5.0808 -0.4854 6.8995 24 6 5.2914 1.3235 5.5686 25 6 6.4077 1.5639 4.5810 26 6 6.8292 2.7465 3.9896 27 6 7.8851 2.7430 3.1008 28 6 8.5268 1.5565 2.7982 29 6 8.1095 0.3797 3.3863 30 6 7.0465 0.3808 4.2787 31 6 6.4211 -0.7655 5.0357 32 1 7.0915 -1.5155 5.4555 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 -0.3633 -1.0277 -0.0005 36 1 1.8934 -0.5138 -0.8900 37 1 1.5978 1.9842 -0.8362 38 1 1.7599 1.9269 0.9355 39 1 3.1255 1.4441 -0.0992 40 1 1.6032 -1.7188 1.2966 41 1 1.7540 -0.1569 2.1368 42 1 3.4571 -2.7078 0.1276 43 1 3.6664 -1.2830 -0.9185 44 1 5.9547 -1.5294 0.7187 45 1 9.0722 -2.4941 0.0271 46 1 4.1892 -2.3576 2.5271 47 1 4.3388 1.6251 5.1332 48 1 5.4750 1.8846 6.4849 49 1 6.3289 3.6739 4.2262 50 1 8.2095 3.6656 2.6426 51 1 9.3531 1.5505 2.1028 52 1 8.6115 -0.5468 3.1497 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496296302.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:57 Heat of formation + Delta-G solvation = 2.553654 kcal Electronic energy + Delta-G solvation = -31317.438562 eV Core-core repulsion = 27474.584479 eV Total energy + Delta-G solvation = -3842.854083 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.19137 -40.26027 -38.61234 -37.36988 -36.33298 -35.02520 -33.05658 -32.52248 -31.47053 -30.46233 -28.52818 -28.02406 -27.19902 -25.73432 -24.47179 -23.61635 -22.53075 -21.93531 -21.23078 -20.80863 -20.51223 -19.09896 -18.16634 -17.19773 -17.03838 -16.73367 -16.53500 -16.05788 -15.89293 -15.71129 -15.47511 -15.03311 -15.01345 -14.78689 -14.51023 -14.27530 -14.21578 -13.99431 -13.69801 -13.51843 -13.33817 -13.20277 -13.12477 -12.94594 -12.80763 -12.65783 -12.60831 -12.19630 -12.14951 -12.00298 -11.88995 -11.75908 -11.70126 -11.54113 -11.49427 -11.34050 -11.18851 -10.96019 -10.33863 -9.88549 -9.57998 -9.30194 -8.97421 -7.90831 -5.20457 0.43957 0.55772 1.46343 1.47351 1.56637 1.64841 2.26761 2.55958 2.66431 2.97354 3.41553 3.47093 3.62817 3.73631 3.86091 3.91584 4.01786 4.06425 4.10803 4.19588 4.20422 4.21354 4.22993 4.27603 4.43632 4.56658 4.59557 4.62950 4.75087 4.75944 4.81190 4.87346 4.89988 4.92679 4.94148 5.01012 5.02159 5.04622 5.12146 5.13234 5.18088 5.26137 5.35034 5.41901 5.47405 5.50341 5.53729 5.58374 5.67354 5.71306 5.78915 6.17333 6.28170 6.70422 7.35897 7.41311 8.09417 8.34398 9.30905 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.006880 B = 0.005238 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4068.612362 B = 5343.912954 C = 7845.075207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.097 4.097 3 C -0.142 4.142 4 C -0.104 4.104 5 C 0.152 3.848 6 H 0.056 0.944 7 C 0.146 3.854 8 N -0.739 5.739 9 C -0.245 4.245 10 H 0.075 0.925 11 C -0.068 4.068 12 N -0.957 5.957 13 Si 0.967 3.033 14 H -0.267 1.267 15 H -0.298 1.298 16 H -0.293 1.293 17 N -0.710 5.710 18 C 0.536 3.464 19 O -0.560 6.560 20 C -0.162 4.162 21 H 0.160 0.840 22 C -0.102 4.102 23 H 0.167 0.833 24 C -0.058 4.058 25 C -0.071 4.071 26 C -0.127 4.127 27 C -0.121 4.121 28 C -0.142 4.142 29 C -0.106 4.106 30 C -0.098 4.098 31 C -0.107 4.107 32 H 0.137 0.863 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.031 0.969 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.034 0.966 43 H 0.033 0.967 44 H 0.374 0.626 45 H 0.248 0.752 46 H 0.405 0.595 47 H 0.092 0.908 48 H 0.099 0.901 49 H 0.135 0.865 50 H 0.142 0.858 51 H 0.121 0.879 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.839 5.730 12.055 17.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.116 4.116 3 C -0.199 4.199 4 C -0.143 4.143 5 C 0.047 3.953 6 H 0.074 0.926 7 C 0.020 3.980 8 N -0.382 5.382 9 C -0.377 4.377 10 H 0.092 0.908 11 C -0.261 4.261 12 N -0.607 5.607 13 Si 0.797 3.203 14 H -0.192 1.192 15 H -0.226 1.226 16 H -0.220 1.220 17 N -0.359 5.359 18 C 0.323 3.677 19 O -0.440 6.440 20 C -0.183 4.183 21 H 0.177 0.823 22 C -0.120 4.120 23 H 0.184 0.816 24 C -0.094 4.094 25 C -0.071 4.071 26 C -0.145 4.145 27 C -0.139 4.139 28 C -0.160 4.160 29 C -0.124 4.124 30 C -0.098 4.098 31 C -0.125 4.125 32 H 0.154 0.846 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.050 0.950 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.052 0.948 43 H 0.050 0.950 44 H 0.206 0.794 45 H 0.057 0.943 46 H 0.240 0.760 47 H 0.111 0.889 48 H 0.117 0.883 49 H 0.153 0.847 50 H 0.160 0.840 51 H 0.139 0.861 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.015 6.471 11.830 17.411 hybrid contribution 1.497 -0.985 -1.051 2.077 sum -9.518 5.486 10.779 15.390 Atomic orbital electron populations 1.21764 0.93369 1.02257 1.02103 1.21133 0.97020 0.95808 0.97607 1.21805 0.99828 0.96549 1.01711 1.21853 0.92798 1.01231 0.98450 1.21028 0.94754 0.96588 0.82966 0.92574 1.21126 0.84761 0.96530 0.95633 1.42492 1.02525 1.58856 1.34372 1.19597 0.90893 1.21190 1.06001 0.90754 1.25471 0.96966 1.02683 1.00966 1.69851 1.04674 1.49306 1.36862 0.85173 0.78302 0.78007 0.78834 1.19181 1.22576 1.22022 1.45924 1.66318 1.10965 1.12739 1.20121 0.76988 0.86064 0.84504 1.90598 1.54384 1.16604 1.82367 1.22527 0.98046 1.02539 0.95197 0.82251 1.23127 0.99648 0.92349 0.96872 0.81557 1.20454 0.97157 0.94594 0.97203 1.20668 0.95502 0.93035 0.97941 1.20852 0.97676 0.97938 0.97989 1.21248 0.96320 0.98323 0.97981 1.21127 1.01407 0.93004 1.00453 1.20797 0.97189 0.98180 0.96245 1.19839 0.96549 0.95045 0.98321 1.21498 0.89624 0.99513 1.01900 0.84568 0.92572 0.91891 0.91951 0.91346 0.91655 0.93038 0.95001 0.90581 0.92120 0.94779 0.94973 0.79360 0.94294 0.76026 0.88947 0.88252 0.84681 0.84015 0.86055 0.87845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.19 71.98 0.66 -2.02 16 2 C -0.10 -2.43 2.80 -10.80 -0.03 -2.46 16 3 C -0.14 -3.83 8.82 71.98 0.63 -3.19 16 4 C -0.10 -2.85 4.46 30.59 0.14 -2.71 16 5 C 0.15 5.23 2.08 44.99 0.09 5.32 16 6 H 0.06 2.33 5.86 -2.39 -0.01 2.31 16 7 C 0.15 5.77 5.49 86.38 0.47 6.25 16 8 N -0.74 -37.28 5.43 -343.44 -1.87 -39.15 16 9 C -0.25 -13.52 9.99 84.03 0.84 -12.68 16 10 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 11 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 12 N -0.96 -57.80 13.06 21.65 0.28 -57.52 16 13 Si 0.97 46.01 29.55 68.60 2.03 48.04 16 14 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 15 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 16 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 17 N -0.71 -23.26 4.49 -442.54 -1.99 -25.24 16 18 C 0.54 17.61 6.90 87.66 0.60 18.21 16 19 O -0.56 -21.03 12.21 -3.04 -0.04 -21.07 16 20 C -0.16 -4.15 6.18 -11.54 -0.07 -4.22 16 21 H 0.16 3.01 8.14 -2.38 -0.02 2.99 16 22 C -0.10 -2.22 7.06 -10.49 -0.07 -2.29 16 23 H 0.17 2.27 8.14 -2.39 -0.02 2.25 16 24 C -0.06 -1.47 5.77 30.08 0.17 -1.29 16 25 C -0.07 -2.27 4.87 -19.75 -0.10 -2.37 16 26 C -0.13 -3.92 10.04 22.35 0.22 -3.70 16 27 C -0.12 -3.83 10.05 22.22 0.22 -3.61 16 28 C -0.14 -5.13 10.04 22.22 0.22 -4.91 16 29 C -0.11 -4.10 10.04 22.35 0.22 -3.87 16 30 C -0.10 -3.36 5.27 -19.76 -0.10 -3.47 16 31 C -0.11 -2.96 6.85 -11.34 -0.08 -3.04 16 32 H 0.14 3.29 8.14 -2.39 -0.02 3.28 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 1.84 6.48 -2.39 -0.02 1.82 16 37 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.03 1.02 6.72 -2.39 -0.02 1.00 16 40 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 42 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.03 1.29 6.72 -2.38 -0.02 1.28 16 44 H 0.37 20.66 7.33 -92.71 -0.68 19.98 16 45 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 46 H 0.40 12.52 8.63 -92.71 -0.80 11.72 16 47 H 0.09 2.69 6.21 -2.39 -0.01 2.67 16 48 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 49 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 50 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 51 H 0.12 4.18 8.06 -2.91 -0.02 4.15 16 52 H 0.10 4.29 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -69.53 411.50 2.39 -67.14 By element: Atomic # 1 Polarization: 57.80 SS G_CDS: -0.56 Total: 57.24 kcal Atomic # 6 Polarization: -33.98 SS G_CDS: 4.53 Total: -29.45 kcal Atomic # 7 Polarization: -118.34 SS G_CDS: -3.57 Total: -121.91 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.04 Total: -21.07 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -69.53 2.39 -67.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496296302.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.695 kcal (2) G-P(sol) polarization free energy of solvation -69.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds