Wall clock time and date at job start Wed Apr 1 2020 01:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47330 * 2 1 4 4 C 1.52995 * 109.47330 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46979 * 180.02562 * 4 3 2 6 6 H 1.09004 * 109.47205 * 304.99337 * 5 4 3 7 7 N 1.46500 * 109.47665 * 64.99769 * 5 4 3 8 8 C 1.34770 * 119.99943 * 59.99434 * 7 5 4 9 9 N 1.34779 * 120.00228 * 180.02562 * 8 7 5 10 10 O 1.21593 * 120.00325 * 0.02562 * 8 7 5 11 11 C 1.50703 * 109.47199 * 185.00116 * 5 4 3 12 12 O 1.21285 * 119.99753 * 259.99994 * 11 5 4 13 13 N 1.34770 * 120.00440 * 79.99171 * 11 5 4 14 14 C 1.47151 * 120.98286 * 359.72406 * 13 11 5 15 15 C 1.53295 * 108.38744 * 230.80800 * 14 13 11 16 16 O 1.42959 * 109.22034 * 307.69425 * 15 14 13 17 17 C 1.42968 * 114.16695 * 62.58189 * 16 15 14 18 18 H 1.09000 * 109.51370 * 57.33974 * 17 16 15 19 19 C 1.52999 * 109.55381 * 177.46994 * 17 16 15 20 20 N 1.46501 * 109.47035 * 299.76890 * 19 17 16 21 21 C 1.36940 * 119.99770 * 180.02562 * 20 19 17 22 22 H 1.08000 * 120.00123 * 359.97438 * 21 20 19 23 23 C 1.38810 * 119.99604 * 179.97438 * 21 20 19 24 24 N 1.31622 * 119.99570 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 120.00371 * 0.02562 * 23 21 20 26 26 H 1.48502 * 109.47087 * 89.99528 * 25 23 21 27 27 H 1.48495 * 109.46840 * 209.99633 * 25 23 21 28 28 H 1.48503 * 109.46662 * 329.99548 * 25 23 21 29 29 C 1.47156 * 120.98466 * 180.02562 * 13 11 5 30 30 H 1.09001 * 109.47133 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47396 * 300.00759 * 1 2 3 32 32 H 1.09006 * 109.46766 * 60.00060 * 1 2 3 33 33 H 1.08997 * 109.47453 * 239.99758 * 2 1 3 34 34 H 1.09003 * 109.47372 * 119.99522 * 2 1 3 35 35 H 1.09001 * 109.47501 * 59.99305 * 3 2 1 36 36 H 1.09000 * 109.46739 * 299.99578 * 3 2 1 37 37 H 1.08997 * 109.47453 * 59.99758 * 4 3 2 38 38 H 1.09000 * 109.46865 * 299.99500 * 4 3 2 39 39 H 0.96998 * 119.99910 * 240.00867 * 7 5 4 40 40 H 0.97001 * 119.99536 * 0.02562 * 9 8 7 41 41 H 0.97002 * 120.00273 * 180.02562 * 9 8 7 42 42 H 1.09006 * 109.68007 * 350.53290 * 14 13 11 43 43 H 1.09000 * 109.68083 * 111.08039 * 14 13 11 44 44 H 1.08999 * 109.51139 * 187.77108 * 15 14 13 45 45 H 1.09002 * 109.55366 * 67.64120 * 15 14 13 46 46 H 1.09001 * 109.47459 * 59.77330 * 19 17 16 47 47 H 1.09000 * 109.46872 * 179.77144 * 19 17 16 48 48 H 0.97001 * 119.99882 * 0.02562 * 20 19 17 49 49 H 0.97005 * 119.99948 * 179.97438 * 24 23 21 50 50 H 1.08995 * 109.67998 * 248.91928 * 29 13 11 51 51 H 1.09004 * 109.67914 * 9.47094 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6450 3.4246 -0.8414 7 7 3.6929 3.5394 1.2523 8 6 4.1178 3.0433 2.4311 9 7 3.7613 3.6450 3.5833 10 8 4.8228 2.0529 2.4553 11 6 5.5818 2.8870 -0.1245 12 8 6.2718 3.0394 0.8613 13 7 6.1583 2.7192 -1.3311 14 6 5.3422 2.5263 -2.5402 15 6 5.8585 1.2866 -3.2795 16 8 7.2687 1.4107 -3.4785 17 6 8.0278 1.4684 -2.2684 18 1 7.8288 0.5787 -1.6710 19 6 9.5194 1.5366 -2.6023 20 7 9.9057 0.3426 -3.3581 21 6 11.2021 0.1822 -3.7691 22 1 11.9396 0.9361 -3.5364 23 6 11.5682 -0.9494 -4.4848 24 7 12.8142 -1.1034 -4.8803 25 14 10.2925 -2.2531 -4.8880 26 1 9.6571 -1.9371 -6.1924 27 1 10.9506 -3.5819 -4.9668 28 1 9.2557 -2.2763 -3.8250 29 6 7.6225 2.7169 -1.4774 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9565 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 3.9330 0.9288 -0.8908 38 1 3.9336 0.9286 0.8892 39 1 3.1307 4.3296 1.2330 40 1 3.1986 4.4349 3.5640 41 1 4.0675 3.2881 4.4317 42 1 4.2993 2.3785 -2.2595 43 1 5.4289 3.4009 -3.1850 44 1 5.3603 1.2049 -4.2454 45 1 5.6516 0.3957 -2.6865 46 1 9.7174 2.4256 -3.2011 47 1 10.0966 1.5846 -1.6789 48 1 9.2432 -0.3343 -3.5674 49 1 13.0702 -1.8943 -5.3801 50 1 7.9391 3.6106 -2.0149 51 1 8.0898 2.6953 -0.4928 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502097731.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:41 Heat of formation + Delta-G solvation = -92.701052 kcal Electronic energy + Delta-G solvation = -31669.902767 eV Core-core repulsion = 27412.068867 eV Total energy + Delta-G solvation = -4257.833900 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.05252 -39.69201 -38.16556 -36.57621 -35.13131 -34.49239 -34.45167 -33.75269 -32.23081 -30.92317 -30.43256 -28.48429 -27.29751 -25.40620 -23.50954 -23.17028 -22.40293 -21.61457 -21.02968 -20.78987 -19.17665 -18.96914 -17.68887 -17.53158 -17.02588 -16.53314 -16.26542 -15.81493 -15.55879 -15.13257 -14.90507 -14.73266 -14.67016 -14.30142 -14.28674 -14.19358 -13.75254 -13.67974 -13.14425 -12.97304 -12.96826 -12.78956 -12.52154 -12.22009 -12.03946 -11.79268 -11.59845 -11.47098 -11.25478 -11.18343 -11.03663 -10.94356 -10.80293 -10.53195 -10.27989 -10.08646 -9.98387 -9.93842 -9.76145 -9.52632 -9.11377 -8.84210 -8.54095 -7.15891 -5.70027 -3.04778 2.37934 2.54905 2.88523 3.22720 3.44947 3.49200 3.51347 3.83461 4.09791 4.21591 4.45021 4.47249 4.61579 4.64327 4.67103 4.73247 4.79446 4.93244 4.97269 5.03005 5.05477 5.23356 5.32534 5.32936 5.39760 5.48736 5.52777 5.58447 5.59813 5.63623 5.72467 5.79723 5.83951 5.85303 5.91039 5.99846 6.03513 6.12394 6.31659 6.41657 6.51828 6.64147 6.72108 7.24452 7.34679 7.72416 8.05608 8.10141 8.48859 8.54947 9.28488 10.00874 10.21561 11.48388 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.013721 B = 0.002740 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.216216 B =10216.777534 C =11264.774229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.111 4.111 4 C -0.139 4.139 5 C 0.157 3.843 6 H 0.108 0.892 7 N -0.733 5.733 8 C 0.710 3.290 9 N -0.871 5.871 10 O -0.561 6.561 11 C 0.501 3.499 12 O -0.502 6.502 13 N -0.616 5.616 14 C 0.069 3.931 15 C 0.044 3.956 16 O -0.360 6.360 17 C 0.070 3.930 18 H 0.063 0.937 19 C 0.168 3.832 20 N -0.750 5.750 21 C -0.242 4.242 22 H 0.090 0.910 23 C 0.003 3.997 24 N -0.935 5.935 25 Si 0.887 3.113 26 H -0.284 1.284 27 H -0.292 1.292 28 H -0.278 1.278 29 C 0.089 3.911 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.398 0.602 40 H 0.392 0.608 41 H 0.414 0.586 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.105 0.895 45 H 0.053 0.947 46 H 0.037 0.963 47 H 0.044 0.956 48 H 0.365 0.635 49 H 0.259 0.741 50 H 0.078 0.922 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.045 12.191 11.945 35.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.148 4.148 4 C -0.178 4.178 5 C 0.047 3.953 6 H 0.126 0.874 7 N -0.390 5.390 8 C 0.408 3.592 9 N -0.440 5.440 10 O -0.435 6.435 11 C 0.287 3.713 12 O -0.375 6.375 13 N -0.353 5.353 14 C -0.054 4.054 15 C -0.034 4.034 16 O -0.279 6.279 17 C 0.011 3.989 18 H 0.081 0.919 19 C 0.040 3.960 20 N -0.396 5.396 21 C -0.372 4.372 22 H 0.108 0.892 23 C -0.192 4.192 24 N -0.584 5.584 25 Si 0.718 3.282 26 H -0.210 1.210 27 H -0.219 1.219 28 H -0.204 1.204 29 C -0.034 4.034 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.116 0.884 39 H 0.232 0.768 40 H 0.219 0.781 41 H 0.246 0.754 42 H 0.108 0.892 43 H 0.098 0.902 44 H 0.123 0.877 45 H 0.071 0.929 46 H 0.055 0.945 47 H 0.062 0.938 48 H 0.198 0.802 49 H 0.069 0.931 50 H 0.096 0.904 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -29.716 11.462 12.148 34.088 hybrid contribution -1.403 -0.297 0.096 1.438 sum -31.120 11.165 12.245 35.257 Atomic orbital electron populations 1.21763 0.95864 1.01642 1.01593 1.21522 0.95745 0.96714 1.02390 1.21542 0.94252 0.97172 1.01872 1.22086 0.96197 0.94320 1.05167 1.20705 0.91953 0.96202 0.86479 0.87437 1.44683 1.56756 1.33425 1.04172 1.15843 0.79612 0.83215 0.80507 1.42972 1.58767 1.34460 1.07782 1.90994 1.39867 1.26888 1.85768 1.20880 0.90734 0.77101 0.82602 1.90769 1.64146 1.46843 1.35710 1.48153 1.07179 1.73105 1.06856 1.22547 0.95446 1.00201 0.87221 1.22931 0.83702 0.95770 1.01026 1.88136 1.15910 1.94094 1.29711 1.22854 0.93781 0.96385 0.85907 0.91923 1.20605 0.87779 0.91662 0.95908 1.42551 1.08819 1.21298 1.66895 1.19060 0.85039 1.04905 1.28147 0.89174 1.24653 0.95992 0.98170 1.00390 1.69711 1.15921 1.29406 1.43332 0.86494 0.81394 0.81965 0.78385 1.21023 1.21865 1.20418 1.22257 0.79466 0.99063 1.02643 0.92771 0.92936 0.92778 0.91832 0.91930 0.91921 0.92078 0.90654 0.88402 0.76798 0.78073 0.75441 0.89161 0.90213 0.87742 0.92853 0.94504 0.93829 0.80225 0.93121 0.90378 0.88018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.16 0.37 -0.49 16 2 C -0.13 -0.86 5.93 -26.73 -0.16 -1.01 16 3 C -0.11 -0.69 5.10 -26.73 -0.14 -0.83 16 4 C -0.14 -1.22 4.21 -26.73 -0.11 -1.33 16 5 C 0.16 1.35 2.15 -69.08 -0.15 1.20 16 6 H 0.11 0.56 6.89 -51.93 -0.36 0.20 16 7 N -0.73 -5.67 4.66 -59.81 -0.28 -5.95 16 8 C 0.71 7.74 7.59 -86.92 -0.66 7.08 16 9 N -0.87 -5.74 8.88 27.63 0.25 -5.49 16 10 O -0.56 -9.13 13.03 -18.21 -0.24 -9.36 16 11 C 0.50 6.59 6.70 -10.99 -0.07 6.52 16 12 O -0.50 -8.87 13.15 -17.94 -0.24 -9.10 16 13 N -0.62 -7.56 3.02 -172.30 -0.52 -8.08 16 14 C 0.07 0.62 6.01 -3.53 -0.02 0.60 16 15 C 0.04 0.49 6.98 37.31 0.26 0.75 16 16 O -0.36 -5.93 10.14 -35.23 -0.36 -6.28 16 17 C 0.07 1.17 2.86 -26.60 -0.08 1.09 16 18 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 19 C 0.17 3.43 5.96 -4.04 -0.02 3.40 16 20 N -0.75 -18.91 5.30 -59.91 -0.32 -19.23 16 21 C -0.24 -7.13 10.47 -15.06 -0.16 -7.29 16 22 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 23 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 24 N -0.94 -30.21 13.97 55.49 0.78 -29.44 16 25 Si 0.89 23.09 27.74 -169.99 -4.71 18.38 16 26 H -0.28 -7.31 7.11 56.52 0.40 -6.90 16 27 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 28 H -0.28 -6.90 6.52 56.52 0.37 -6.53 16 29 C 0.09 1.28 5.93 -3.55 -0.02 1.26 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.40 7.75 -51.93 -0.40 0.00 16 36 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.07 0.63 6.91 -51.93 -0.36 0.28 16 38 H 0.10 1.23 6.04 -51.93 -0.31 0.92 16 39 H 0.40 1.58 8.84 -40.82 -0.36 1.22 16 40 H 0.39 1.16 8.84 -40.82 -0.36 0.80 16 41 H 0.41 2.59 8.93 -40.82 -0.36 2.23 16 42 H 0.09 0.53 4.86 -51.93 -0.25 0.27 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.36 9.13 5.41 -40.82 -0.22 8.91 16 49 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 50 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 51 H 0.10 1.61 7.08 -51.93 -0.37 1.24 16 LS Contribution 399.70 15.07 6.02 6.02 Total: -1.00 -40.48 399.70 -9.12 -49.61 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -8.45 Total: 7.96 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: -1.06 Total: 10.96 kcal Atomic # 7 Polarization: -68.09 SS G_CDS: -0.10 Total: -68.18 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.83 Total: -24.75 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -4.71 Total: 18.38 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -40.48 -9.12 -49.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502097731.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.095 kcal (2) G-P(sol) polarization free energy of solvation -40.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds