Wall clock time and date at job start Wed Apr 1 2020 01:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47330 * 2 1 4 4 C 1.52995 * 109.47330 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46979 * 180.02562 * 4 3 2 6 6 H 1.09004 * 109.47205 * 304.99337 * 5 4 3 7 7 N 1.46500 * 109.47665 * 64.99769 * 5 4 3 8 8 C 1.34770 * 119.99943 * 59.99434 * 7 5 4 9 9 N 1.34779 * 120.00228 * 180.02562 * 8 7 5 10 10 O 1.21593 * 120.00325 * 0.02562 * 8 7 5 11 11 C 1.50703 * 109.47199 * 185.00116 * 5 4 3 12 12 O 1.21285 * 119.99753 * 259.99994 * 11 5 4 13 13 N 1.34770 * 120.00440 * 79.99171 * 11 5 4 14 14 C 1.47151 * 120.98286 * 359.72406 * 13 11 5 15 15 C 1.53295 * 108.38744 * 230.80800 * 14 13 11 16 16 O 1.42959 * 109.22034 * 307.69425 * 15 14 13 17 17 C 1.42968 * 114.16695 * 62.58189 * 16 15 14 18 18 H 1.09000 * 109.51370 * 57.33974 * 17 16 15 19 19 C 1.52999 * 109.55381 * 177.46994 * 17 16 15 20 20 N 1.46501 * 109.47035 * 299.76890 * 19 17 16 21 21 C 1.36940 * 119.99770 * 180.02562 * 20 19 17 22 22 H 1.08000 * 120.00123 * 359.97438 * 21 20 19 23 23 C 1.38810 * 119.99604 * 179.97438 * 21 20 19 24 24 N 1.31622 * 119.99570 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 120.00371 * 0.02562 * 23 21 20 26 26 H 1.48502 * 109.47087 * 89.99528 * 25 23 21 27 27 H 1.48495 * 109.46840 * 209.99633 * 25 23 21 28 28 H 1.48503 * 109.46662 * 329.99548 * 25 23 21 29 29 C 1.47156 * 120.98466 * 180.02562 * 13 11 5 30 30 H 1.09001 * 109.47133 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47396 * 300.00759 * 1 2 3 32 32 H 1.09006 * 109.46766 * 60.00060 * 1 2 3 33 33 H 1.08997 * 109.47453 * 239.99758 * 2 1 3 34 34 H 1.09003 * 109.47372 * 119.99522 * 2 1 3 35 35 H 1.09001 * 109.47501 * 59.99305 * 3 2 1 36 36 H 1.09000 * 109.46739 * 299.99578 * 3 2 1 37 37 H 1.08997 * 109.47453 * 59.99758 * 4 3 2 38 38 H 1.09000 * 109.46865 * 299.99500 * 4 3 2 39 39 H 0.96998 * 119.99910 * 240.00867 * 7 5 4 40 40 H 0.97001 * 119.99536 * 0.02562 * 9 8 7 41 41 H 0.97002 * 120.00273 * 180.02562 * 9 8 7 42 42 H 1.09006 * 109.68007 * 350.53290 * 14 13 11 43 43 H 1.09000 * 109.68083 * 111.08039 * 14 13 11 44 44 H 1.08999 * 109.51139 * 187.77108 * 15 14 13 45 45 H 1.09002 * 109.55366 * 67.64120 * 15 14 13 46 46 H 1.09001 * 109.47459 * 59.77330 * 19 17 16 47 47 H 1.09000 * 109.46872 * 179.77144 * 19 17 16 48 48 H 0.97001 * 119.99882 * 0.02562 * 20 19 17 49 49 H 0.97005 * 119.99948 * 179.97438 * 24 23 21 50 50 H 1.08995 * 109.67998 * 248.91928 * 29 13 11 51 51 H 1.09004 * 109.67914 * 9.47094 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6450 3.4246 -0.8414 7 7 3.6929 3.5394 1.2523 8 6 4.1178 3.0433 2.4311 9 7 3.7613 3.6450 3.5833 10 8 4.8228 2.0529 2.4553 11 6 5.5818 2.8870 -0.1245 12 8 6.2718 3.0394 0.8613 13 7 6.1583 2.7192 -1.3311 14 6 5.3422 2.5263 -2.5402 15 6 5.8585 1.2866 -3.2795 16 8 7.2687 1.4107 -3.4785 17 6 8.0278 1.4684 -2.2684 18 1 7.8288 0.5787 -1.6710 19 6 9.5194 1.5366 -2.6023 20 7 9.9057 0.3426 -3.3581 21 6 11.2021 0.1822 -3.7691 22 1 11.9396 0.9361 -3.5364 23 6 11.5682 -0.9494 -4.4848 24 7 12.8142 -1.1034 -4.8803 25 14 10.2925 -2.2531 -4.8880 26 1 9.6571 -1.9371 -6.1924 27 1 10.9506 -3.5819 -4.9668 28 1 9.2557 -2.2763 -3.8250 29 6 7.6225 2.7169 -1.4774 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9565 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 3.9330 0.9288 -0.8908 38 1 3.9336 0.9286 0.8892 39 1 3.1307 4.3296 1.2330 40 1 3.1986 4.4349 3.5640 41 1 4.0675 3.2881 4.4317 42 1 4.2993 2.3785 -2.2595 43 1 5.4289 3.4009 -3.1850 44 1 5.3603 1.2049 -4.2454 45 1 5.6516 0.3957 -2.6865 46 1 9.7174 2.4256 -3.2011 47 1 10.0966 1.5846 -1.6789 48 1 9.2432 -0.3343 -3.5674 49 1 13.0702 -1.8943 -5.3801 50 1 7.9391 3.6106 -2.0149 51 1 8.0898 2.6953 -0.4928 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502097731.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:40 Heat of formation + Delta-G solvation = -126.444702 kcal Electronic energy + Delta-G solvation = -31671.366002 eV Core-core repulsion = 27412.068867 eV Total energy + Delta-G solvation = -4259.297134 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.93502 -40.64881 -39.25114 -37.26590 -36.79811 -35.71274 -35.20645 -34.45359 -33.99771 -32.37462 -31.33651 -29.50319 -28.37935 -26.65760 -24.73135 -24.02230 -23.62777 -22.75406 -22.09891 -21.58662 -20.07329 -19.80095 -19.64676 -18.31377 -17.95601 -17.65597 -17.12304 -16.82664 -16.54765 -16.37217 -16.13801 -15.84063 -15.68624 -15.41498 -15.25127 -15.05948 -14.83327 -14.64814 -14.55683 -14.25492 -14.12257 -13.76975 -13.69986 -13.51886 -13.13769 -12.86643 -12.73536 -12.61395 -12.33117 -12.19152 -12.07795 -12.01916 -11.85946 -11.79166 -11.65040 -11.45611 -11.31129 -11.09029 -10.99550 -10.83688 -10.47666 -9.92053 -9.57743 -9.33346 -8.04374 -5.38047 1.36413 1.40405 1.47630 1.54350 1.65321 2.12206 2.42483 2.47517 2.70676 3.27050 3.35646 3.42134 3.65673 3.82435 3.84752 3.91213 3.92594 4.03575 4.08198 4.14423 4.22338 4.27604 4.35538 4.40411 4.48471 4.52328 4.65696 4.73622 4.81135 4.84292 4.90403 4.91058 5.00651 5.03538 5.04056 5.24002 5.28154 5.33749 5.39583 5.50561 5.52799 5.71711 5.96061 6.09986 6.16850 6.21143 6.33642 7.04841 7.15177 7.19666 7.79945 7.84417 8.00769 9.17037 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.013721 B = 0.002740 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.216216 B =10216.777534 C =11264.774229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C -0.101 4.101 4 C -0.133 4.133 5 C 0.161 3.839 6 H 0.158 0.842 7 N -0.719 5.719 8 C 0.700 3.300 9 N -0.855 5.855 10 O -0.620 6.620 11 C 0.493 3.507 12 O -0.555 6.555 13 N -0.616 5.616 14 C 0.071 3.929 15 C 0.033 3.967 16 O -0.386 6.386 17 C 0.087 3.913 18 H 0.048 0.952 19 C 0.163 3.837 20 N -0.753 5.753 21 C -0.237 4.237 22 H 0.059 0.941 23 C -0.063 4.063 24 N -0.982 5.982 25 Si 0.959 3.041 26 H -0.274 1.274 27 H -0.293 1.293 28 H -0.260 1.260 29 C 0.097 3.903 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.039 0.961 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.054 0.946 39 H 0.420 0.580 40 H 0.412 0.588 41 H 0.415 0.585 42 H 0.130 0.870 43 H 0.099 0.901 44 H 0.135 0.865 45 H 0.050 0.950 46 H 0.038 0.962 47 H 0.041 0.959 48 H 0.367 0.633 49 H 0.259 0.741 50 H 0.088 0.912 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.615 13.336 10.917 39.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C -0.138 4.138 4 C -0.172 4.172 5 C 0.052 3.948 6 H 0.175 0.825 7 N -0.377 5.377 8 C 0.398 3.602 9 N -0.424 5.424 10 O -0.499 6.499 11 C 0.280 3.720 12 O -0.432 6.432 13 N -0.351 5.351 14 C -0.051 4.051 15 C -0.044 4.044 16 O -0.305 6.305 17 C 0.028 3.972 18 H 0.066 0.934 19 C 0.037 3.963 20 N -0.399 5.399 21 C -0.368 4.368 22 H 0.077 0.923 23 C -0.255 4.255 24 N -0.633 5.633 25 Si 0.786 3.214 26 H -0.200 1.200 27 H -0.219 1.219 28 H -0.185 1.185 29 C -0.027 4.027 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.257 0.743 40 H 0.242 0.758 41 H 0.247 0.753 42 H 0.148 0.852 43 H 0.117 0.883 44 H 0.153 0.847 45 H 0.068 0.932 46 H 0.056 0.944 47 H 0.059 0.941 48 H 0.201 0.799 49 H 0.068 0.932 50 H 0.106 0.894 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -34.394 12.696 11.129 38.314 hybrid contribution 0.038 -0.580 0.460 0.742 sum -34.356 12.115 11.589 38.229 Atomic orbital electron populations 1.21739 0.94807 1.01742 1.02297 1.21532 0.96647 0.97102 1.01364 1.21492 0.92013 0.96948 1.03363 1.22001 0.97976 0.93918 1.03305 1.20869 0.88691 0.97011 0.88275 0.82485 1.44514 1.56278 1.33832 1.03071 1.16209 0.79243 0.82800 0.81937 1.42798 1.58233 1.34637 1.06765 1.90967 1.42569 1.29607 1.86748 1.21817 0.92617 0.75712 0.81828 1.90751 1.65694 1.49215 1.37496 1.48267 1.06264 1.72502 1.08065 1.22805 0.96676 0.99822 0.85782 1.23319 0.81067 0.96884 1.03151 1.88078 1.18785 1.94353 1.29244 1.22428 0.91589 0.96915 0.86302 0.93395 1.20734 0.90800 0.89800 0.95013 1.42539 1.07217 1.22881 1.67218 1.19056 0.86306 1.04016 1.27411 0.92332 1.25506 0.98274 1.00833 1.00843 1.69886 1.18309 1.30366 1.44725 0.85346 0.78868 0.78371 0.78798 1.19981 1.21916 1.18462 1.21952 0.81568 0.98169 1.01047 0.93084 0.92806 0.91429 0.91753 0.94213 0.91933 0.88892 0.90204 0.92759 0.74251 0.75752 0.75280 0.85201 0.88270 0.84715 0.93156 0.94399 0.94073 0.79939 0.93210 0.89359 0.90176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 71.98 0.71 -0.60 16 2 C -0.13 -1.50 5.93 30.59 0.18 -1.32 16 3 C -0.10 -0.92 5.10 30.59 0.16 -0.76 16 4 C -0.13 -2.04 4.21 30.59 0.13 -1.91 16 5 C 0.16 2.27 2.15 44.25 0.10 2.37 16 6 H 0.16 0.66 6.89 -2.38 -0.02 0.64 16 7 N -0.72 -9.32 4.66 -461.40 -2.15 -11.47 16 8 C 0.70 14.81 7.59 179.06 1.36 16.16 16 9 N -0.85 -10.29 8.88 -184.74 -1.64 -11.93 16 10 O -0.62 -20.87 13.03 18.45 0.24 -20.63 16 11 C 0.49 12.29 6.70 87.66 0.59 12.87 16 12 O -0.56 -19.96 13.15 19.42 0.26 -19.70 16 13 N -0.62 -13.88 3.02 -817.42 -2.47 -16.35 16 14 C 0.07 0.96 6.01 86.35 0.52 1.48 16 15 C 0.03 0.62 6.98 72.08 0.50 1.13 16 16 O -0.39 -11.96 10.14 -148.98 -1.51 -13.47 16 17 C 0.09 2.89 2.86 30.68 0.09 2.98 16 18 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 19 C 0.16 6.76 5.96 86.38 0.51 7.27 16 20 N -0.75 -38.16 5.30 -343.45 -1.82 -39.98 16 21 C -0.24 -14.31 10.47 84.03 0.88 -13.43 16 22 H 0.06 3.82 8.06 -2.91 -0.02 3.80 16 23 C -0.06 -3.89 5.50 84.86 0.47 -3.42 16 24 N -0.98 -64.99 13.97 21.65 0.30 -64.69 16 25 Si 0.96 47.84 27.74 68.60 1.90 49.75 16 26 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 27 H -0.29 -14.54 7.11 99.48 0.71 -13.84 16 28 H -0.26 -12.02 6.52 99.48 0.65 -11.37 16 29 C 0.10 2.77 5.93 86.34 0.51 3.28 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 0.60 7.75 -2.39 -0.02 0.58 16 36 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.08 1.12 6.91 -2.39 -0.02 1.10 16 38 H 0.05 1.38 6.04 -2.39 -0.01 1.37 16 39 H 0.42 1.73 8.84 -92.71 -0.82 0.91 16 40 H 0.41 1.52 8.84 -92.71 -0.82 0.70 16 41 H 0.42 5.01 8.93 -92.71 -0.83 4.18 16 42 H 0.13 0.74 4.86 -2.38 -0.01 0.72 16 43 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.37 18.08 5.41 -92.71 -0.50 17.58 16 49 H 0.26 16.23 8.31 -92.70 -0.77 15.46 16 50 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 51 H 0.08 2.65 7.08 -2.39 -0.02 2.63 16 Total: -1.00 -94.15 399.70 -2.23 -96.38 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: -2.05 Total: 25.98 kcal Atomic # 6 Polarization: 19.40 SS G_CDS: 6.70 Total: 26.10 kcal Atomic # 7 Polarization: -136.64 SS G_CDS: -7.78 Total: -144.41 kcal Atomic # 8 Polarization: -52.79 SS G_CDS: -1.02 Total: -53.80 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 1.90 Total: 49.75 kcal Total: -94.15 -2.23 -96.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502097731.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.062 kcal (2) G-P(sol) polarization free energy of solvation -94.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds