Wall clock time and date at job start Wed Apr 1 2020 02:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47092 * 2 1 4 4 C 1.53000 * 109.47092 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47269 * 305.00167 * 4 3 2 6 6 N 1.46497 * 109.46943 * 65.00113 * 4 3 2 7 7 C 1.34778 * 119.99849 * 60.00063 * 6 4 3 8 8 N 1.34782 * 119.99696 * 179.97438 * 7 6 4 9 9 O 1.21583 * 120.00003 * 359.97438 * 7 6 4 10 10 C 1.50694 * 109.47117 * 185.00110 * 4 3 2 11 11 O 1.21282 * 120.00327 * 260.00389 * 10 4 3 12 12 N 1.34776 * 119.99973 * 79.99969 * 10 4 3 13 13 C 1.46929 * 120.63324 * 0.02562 * 12 10 4 14 14 C 1.53186 * 108.77828 * 126.41088 * 13 12 10 15 15 C 1.53050 * 109.31167 * 54.63807 * 14 13 12 16 16 C 1.53041 * 109.53497 * 298.63601 * 15 14 13 17 17 C 1.52999 * 109.49414 * 181.31412 * 16 15 14 18 18 O 1.42903 * 109.47256 * 65.00397 * 17 16 15 19 19 N 1.46500 * 109.49939 * 301.38082 * 16 15 14 20 20 C 1.36940 * 119.99554 * 299.93602 * 19 16 15 21 21 H 1.07998 * 120.00412 * 359.97438 * 20 19 16 22 22 C 1.38822 * 119.99560 * 179.97438 * 20 19 16 23 23 N 1.31618 * 119.99821 * 180.02562 * 22 20 19 24 24 Si 1.86793 * 120.00088 * 0.02562 * 22 20 19 25 25 H 1.48509 * 109.47161 * 89.99920 * 24 22 20 26 26 H 1.48497 * 109.47438 * 209.99772 * 24 22 20 27 27 H 1.48499 * 109.47517 * 330.00150 * 24 22 20 28 28 C 1.46926 * 120.63232 * 180.02562 * 12 10 4 29 29 H 1.08997 * 109.47349 * 59.99861 * 1 2 3 30 30 H 1.09005 * 109.46855 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47314 * 299.99604 * 1 2 3 32 32 H 1.09000 * 109.47031 * 240.00018 * 2 1 3 33 33 H 1.08997 * 109.47349 * 120.00139 * 2 1 3 34 34 H 1.08995 * 109.46718 * 60.00031 * 3 2 1 35 35 H 1.08997 * 109.47137 * 300.00269 * 3 2 1 36 36 H 0.97002 * 119.99939 * 239.99656 * 6 4 3 37 37 H 0.96999 * 119.99614 * 0.02562 * 8 7 6 38 38 H 0.96996 * 119.99452 * 179.97438 * 8 7 6 39 39 H 1.09003 * 109.58182 * 6.62971 * 13 12 10 40 40 H 1.09005 * 109.70443 * 246.27118 * 13 12 10 41 41 H 1.09000 * 109.49958 * 294.68763 * 14 13 12 42 42 H 1.09001 * 109.50191 * 174.59129 * 14 13 12 43 43 H 1.09001 * 109.46041 * 178.61538 * 15 14 13 44 44 H 1.08991 * 109.44693 * 58.64804 * 15 14 13 45 45 H 1.08997 * 109.47286 * 304.99958 * 17 16 15 46 46 H 1.09008 * 109.47201 * 184.99738 * 17 16 15 47 47 H 0.96700 * 114.00311 * 180.02562 * 18 17 16 48 48 H 0.96997 * 120.00338 * 119.93833 * 19 16 15 49 49 H 0.96994 * 119.99929 * 180.02562 * 23 22 20 50 50 H 1.09002 * 109.58499 * 113.80092 * 28 12 10 51 51 H 1.08996 * 109.59032 * 353.37740 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8426 6 7 4.0588 0.8587 -1.2509 7 6 3.7337 1.4239 -2.4304 8 7 4.1838 0.8870 -3.5818 9 8 3.0343 2.4182 -2.4558 10 6 4.0723 2.8579 0.1245 11 8 4.4467 3.4570 -0.8613 12 7 4.1053 3.4581 1.3308 13 6 3.6555 2.7453 2.5343 14 6 4.7689 2.8000 3.5849 15 6 5.1633 4.2585 3.8289 16 6 5.6943 4.8693 2.5300 17 6 6.1188 6.3173 2.7828 18 8 7.2233 6.3385 3.6893 19 7 6.8473 4.0963 2.0617 20 6 7.9606 3.9813 2.8508 21 1 7.9888 4.4608 3.8181 22 6 9.0530 3.2484 2.4073 23 7 10.1228 3.1374 3.1659 24 14 9.0045 2.4197 0.7340 25 1 9.5272 3.3532 -0.2960 26 1 9.8438 1.1950 0.7635 27 1 7.6041 2.0522 0.4039 28 6 4.5918 4.8377 1.4675 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 4.6165 0.0652 -1.2306 37 1 4.7415 0.0936 -3.5614 38 1 3.9495 1.2937 -4.4306 39 1 3.4398 1.7064 2.2843 40 1 2.7572 3.2204 2.9287 41 1 5.6352 2.2440 3.2263 42 1 4.4129 2.3588 4.5158 43 1 5.9384 4.3020 4.5941 44 1 4.2907 4.8192 4.1637 45 1 5.2844 6.8706 3.2137 46 1 6.4134 6.7794 1.8405 47 1 7.5457 7.2265 3.8958 48 1 6.8222 3.6660 1.1928 49 1 10.8862 2.6257 2.8559 50 1 3.7708 5.4860 1.7738 51 1 4.9937 5.1797 0.5138 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502597158.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:24 Heat of formation + Delta-G solvation = -123.546192 kcal Electronic energy + Delta-G solvation = -33410.058442 eV Core-core repulsion = 29150.886997 eV Total energy + Delta-G solvation = -4259.171445 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.88568 -40.60690 -39.12299 -37.11313 -36.89287 -35.57632 -34.86084 -33.84094 -33.78381 -32.74807 -31.33255 -29.91697 -26.90638 -26.64753 -25.38676 -24.82616 -23.07137 -22.83651 -21.71070 -20.41372 -19.88094 -19.68482 -19.53513 -18.24326 -17.93165 -17.83282 -16.95144 -16.58323 -16.39599 -16.22505 -15.95663 -15.62209 -15.45092 -15.23605 -15.07443 -14.83373 -14.77771 -14.58765 -14.29639 -14.16016 -13.83019 -13.70233 -13.37020 -13.24446 -13.04023 -12.81845 -12.76582 -12.52875 -12.27985 -12.10322 -11.97196 -11.77202 -11.72538 -11.60539 -11.49721 -11.34041 -11.18585 -10.85029 -10.74499 -10.56574 -10.48264 -9.87584 -9.50164 -9.17272 -7.84882 -5.13753 1.28134 1.35207 1.38240 1.59813 1.88896 2.15049 2.42989 2.53759 3.36989 3.42974 3.53877 3.63931 3.69526 3.86629 3.93673 4.01651 4.11772 4.25210 4.27230 4.31043 4.39890 4.49198 4.53878 4.62891 4.64473 4.67347 4.76255 4.79261 4.90557 4.97743 4.99313 5.02155 5.06401 5.26777 5.29635 5.34059 5.48085 5.50203 5.57391 5.61627 5.69200 5.90592 6.08958 6.11752 6.44895 6.49741 7.09326 7.13539 7.27157 7.30351 7.81199 7.99203 8.15529 9.37311 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.011751 B = 0.004505 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.195873 B = 6213.714725 C = 7236.318193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.111 4.111 3 C -0.122 4.122 4 C 0.153 3.847 5 H 0.136 0.864 6 N -0.726 5.726 7 C 0.702 3.298 8 N -0.856 5.856 9 O -0.612 6.612 10 C 0.491 3.509 11 O -0.562 6.562 12 N -0.603 5.603 13 C 0.107 3.893 14 C -0.126 4.126 15 C -0.110 4.110 16 C 0.182 3.818 17 C 0.072 3.928 18 O -0.562 6.562 19 N -0.734 5.734 20 C -0.161 4.161 21 H 0.094 0.906 22 C -0.075 4.075 23 N -0.990 5.990 24 Si 0.932 3.068 25 H -0.307 1.307 26 H -0.298 1.298 27 H -0.269 1.269 28 C 0.120 3.880 29 H 0.038 0.962 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.413 0.587 37 H 0.410 0.590 38 H 0.417 0.583 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.042 0.958 42 H 0.092 0.908 43 H 0.042 0.958 44 H 0.082 0.918 45 H 0.069 0.931 46 H 0.025 0.975 47 H 0.372 0.628 48 H 0.351 0.649 49 H 0.247 0.753 50 H 0.104 0.896 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.711 -7.196 -3.943 23.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C -0.161 4.161 4 C 0.043 3.957 5 H 0.154 0.846 6 N -0.384 5.384 7 C 0.401 3.599 8 N -0.426 5.426 9 O -0.491 6.491 10 C 0.278 3.722 11 O -0.439 6.439 12 N -0.336 5.336 13 C -0.014 4.014 14 C -0.164 4.164 15 C -0.149 4.149 16 C 0.092 3.908 17 C -0.008 4.008 18 O -0.367 6.367 19 N -0.375 5.375 20 C -0.292 4.292 21 H 0.112 0.888 22 C -0.264 4.264 23 N -0.644 5.644 24 Si 0.765 3.235 25 H -0.235 1.235 26 H -0.225 1.225 27 H -0.195 1.195 28 C -0.004 4.004 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.249 0.751 37 H 0.240 0.760 38 H 0.249 0.751 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.061 0.939 42 H 0.110 0.890 43 H 0.061 0.939 44 H 0.101 0.899 45 H 0.087 0.913 46 H 0.043 0.957 47 H 0.219 0.781 48 H 0.183 0.817 49 H 0.057 0.943 50 H 0.121 0.879 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.100 -6.692 -4.198 23.469 hybrid contribution 1.716 -0.109 -1.662 2.392 sum -20.383 -6.800 -5.860 22.272 Atomic orbital electron populations 1.21732 0.95204 1.02106 1.01643 1.21437 0.96315 0.94409 1.02731 1.21937 0.90741 0.99647 1.03797 1.20936 0.96833 0.90460 0.87427 0.84625 1.44647 1.57145 1.32893 1.03690 1.16133 0.80142 0.82004 0.81658 1.42795 1.58148 1.34788 1.06843 1.90909 1.44079 1.27428 1.86679 1.21612 0.77936 0.90149 0.82531 1.90718 1.48642 1.66601 1.37946 1.48053 1.63599 1.14417 1.07579 1.22109 0.97300 0.98231 0.83759 1.21775 0.98177 0.97084 0.99375 1.21737 0.99895 0.96441 0.96826 1.20345 0.86337 0.90220 0.93907 1.22629 0.89028 0.97258 0.91888 1.86890 1.51023 1.32761 1.66071 1.42849 1.14531 1.61213 1.18900 1.19369 0.90133 1.20191 0.99527 0.88821 1.25170 0.97082 1.03975 1.00133 1.69828 1.06476 1.49306 1.38834 0.85730 0.76882 0.78100 0.82799 1.23520 1.22492 1.19528 1.21581 0.96424 0.83907 0.98486 0.94237 0.91654 0.91835 0.92559 0.89804 0.89300 0.92106 0.75051 0.76028 0.75106 0.87843 0.88112 0.93934 0.88958 0.93879 0.89942 0.91299 0.95683 0.78052 0.81679 0.94345 0.87851 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 71.98 0.71 -1.26 16 2 C -0.11 -1.58 5.82 30.60 0.18 -1.40 16 3 C -0.12 -2.45 4.31 30.60 0.13 -2.31 16 4 C 0.15 3.61 2.16 44.24 0.10 3.71 16 5 H 0.14 2.42 6.54 -2.39 -0.02 2.41 16 6 N -0.73 -16.87 4.66 -461.43 -2.15 -19.02 16 7 C 0.70 19.91 7.59 179.05 1.36 21.27 16 8 N -0.86 -16.36 8.88 -184.74 -1.64 -18.00 16 9 O -0.61 -23.29 13.03 18.48 0.24 -23.05 16 10 C 0.49 16.31 6.69 87.66 0.59 16.90 16 11 O -0.56 -24.49 13.09 19.42 0.25 -24.23 16 12 N -0.60 -17.51 2.87 -818.99 -2.35 -19.86 16 13 C 0.11 2.20 5.58 86.36 0.48 2.69 16 14 C -0.13 -3.39 5.93 30.67 0.18 -3.21 16 15 C -0.11 -3.40 4.43 30.62 0.14 -3.27 16 16 C 0.18 6.50 0.68 3.67 0.00 6.50 16 17 C 0.07 2.42 6.09 71.98 0.44 2.86 16 18 O -0.56 -21.94 9.91 -148.98 -1.48 -23.42 16 19 N -0.73 -34.21 4.02 -303.05 -1.22 -35.43 16 20 C -0.16 -9.00 8.62 84.04 0.72 -8.27 16 21 H 0.09 5.71 5.52 -2.91 -0.02 5.69 16 22 C -0.07 -4.52 5.50 84.86 0.47 -4.05 16 23 N -0.99 -64.96 13.97 21.65 0.30 -64.66 16 24 Si 0.93 49.24 27.74 68.60 1.90 51.14 16 25 H -0.31 -16.84 7.11 99.48 0.71 -16.13 16 26 H -0.30 -15.65 7.11 99.48 0.71 -14.94 16 27 H -0.27 -13.39 6.52 99.48 0.65 -12.74 16 28 C 0.12 3.78 5.14 86.35 0.44 4.22 16 29 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.86 7.75 -2.39 -0.02 0.85 16 33 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.09 1.48 7.20 -2.39 -0.02 1.46 16 35 H 0.06 1.70 6.04 -2.39 -0.01 1.69 16 36 H 0.41 6.85 8.84 -92.71 -0.82 6.03 16 37 H 0.41 4.91 8.84 -92.71 -0.82 4.09 16 38 H 0.42 7.33 8.93 -92.71 -0.83 6.50 16 39 H 0.10 1.59 5.19 -2.39 -0.01 1.57 16 40 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 41 H 0.04 1.52 7.53 -2.39 -0.02 1.50 16 42 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.04 1.66 6.97 -2.39 -0.02 1.65 16 44 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 47 H 0.37 10.98 9.12 -74.06 -0.68 10.31 16 48 H 0.35 17.46 5.51 -92.71 -0.51 16.95 16 49 H 0.25 15.76 8.31 -92.71 -0.77 14.99 16 50 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 51 H 0.06 2.31 7.01 -2.39 -0.02 2.30 16 Total: -1.00 -91.80 388.09 -2.90 -94.70 By element: Atomic # 1 Polarization: 50.14 SS G_CDS: -2.70 Total: 47.44 kcal Atomic # 6 Polarization: 28.44 SS G_CDS: 5.94 Total: 34.38 kcal Atomic # 7 Polarization: -149.91 SS G_CDS: -7.06 Total: -156.97 kcal Atomic # 8 Polarization: -69.71 SS G_CDS: -0.98 Total: -70.70 kcal Atomic # 14 Polarization: 49.24 SS G_CDS: 1.90 Total: 51.14 kcal Total: -91.80 -2.90 -94.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502597158.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.848 kcal (2) G-P(sol) polarization free energy of solvation -91.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds