Wall clock time and date at job start Wed Apr 1 2020 02:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46737 * 2 1 4 4 C 1.52999 * 109.47022 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47704 * 305.54117 * 4 3 2 6 6 N 1.46506 * 109.47146 * 65.54131 * 4 3 2 7 7 C 1.34776 * 119.99742 * 275.00359 * 6 4 3 8 8 N 1.34779 * 120.00038 * 179.97438 * 7 6 4 9 9 O 1.21586 * 119.99905 * 359.97438 * 7 6 4 10 10 C 1.50699 * 109.47347 * 185.53528 * 4 3 2 11 11 O 1.21284 * 120.00651 * 262.47981 * 10 4 3 12 12 N 1.34778 * 119.99674 * 82.47760 * 10 4 3 13 13 C 1.46927 * 120.63115 * 175.01179 * 12 10 4 14 14 C 1.53184 * 108.77673 * 233.63100 * 13 12 10 15 15 C 1.53042 * 109.31580 * 305.36351 * 14 13 12 16 16 C 1.53043 * 109.53599 * 61.36216 * 15 14 13 17 17 C 1.53003 * 109.52641 * 178.67077 * 16 15 14 18 18 O 1.42897 * 109.47100 * 299.92394 * 17 16 15 19 19 N 1.46502 * 109.49523 * 58.58858 * 16 15 14 20 20 C 1.36934 * 119.99907 * 60.16492 * 19 16 15 21 21 H 1.08002 * 120.00079 * 359.71858 * 20 19 16 22 22 C 1.38804 * 120.00049 * 179.97438 * 20 19 16 23 23 N 1.31616 * 120.00379 * 359.72023 * 22 20 19 24 24 Si 1.86811 * 120.00084 * 179.72394 * 22 20 19 25 25 H 1.48498 * 109.46655 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47140 * 119.99751 * 24 22 20 27 27 H 1.48500 * 109.47014 * 239.99797 * 24 22 20 28 28 C 1.46924 * 120.63065 * 355.03217 * 12 10 4 29 29 H 1.09005 * 109.46556 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47353 * 300.00000 * 1 2 3 31 31 H 1.08994 * 109.47015 * 60.00469 * 1 2 3 32 32 H 1.08991 * 109.47341 * 239.99355 * 2 1 3 33 33 H 1.09006 * 109.46628 * 119.99487 * 2 1 3 34 34 H 1.08998 * 109.47722 * 59.99954 * 3 2 1 35 35 H 1.09002 * 109.47509 * 299.99831 * 3 2 1 36 36 H 0.97002 * 120.00317 * 94.99371 * 6 4 3 37 37 H 0.97002 * 120.00021 * 359.97438 * 8 7 6 38 38 H 0.96997 * 120.00000 * 179.97438 * 8 7 6 39 39 H 1.09004 * 109.58803 * 353.41816 * 13 12 10 40 40 H 1.09004 * 109.58952 * 113.84018 * 13 12 10 41 41 H 1.08998 * 109.50065 * 65.31665 * 14 13 12 42 42 H 1.09001 * 109.50074 * 185.37919 * 14 13 12 43 43 H 1.09007 * 109.45909 * 301.34988 * 15 14 13 44 44 H 1.08990 * 109.46456 * 181.38863 * 15 14 13 45 45 H 1.09003 * 109.46530 * 59.92135 * 17 16 15 46 46 H 1.08999 * 109.47056 * 179.97438 * 17 16 15 47 47 H 0.96693 * 113.99959 * 179.97438 * 18 17 16 48 48 H 0.96996 * 119.99842 * 240.15600 * 19 16 15 49 49 H 0.96993 * 120.00496 * 180.02562 * 23 22 20 50 50 H 1.09001 * 109.58696 * 6.58600 * 28 12 10 51 51 H 1.08998 * 109.58745 * 246.15691 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9330 0.8454 0.8371 6 7 4.0588 0.8705 -1.2564 7 6 4.1876 -0.4650 -1.3839 8 7 4.6369 -0.9914 -2.5404 9 8 3.8984 -1.1950 -0.4555 10 6 4.0722 2.8568 0.1377 11 8 4.4044 3.4806 -0.8479 12 7 4.1522 3.4284 1.3556 13 6 4.7409 4.7647 1.5182 14 6 5.8456 4.6913 2.5770 15 6 5.2732 4.0957 3.8653 16 6 4.7697 2.6763 3.5934 17 6 4.2278 2.0689 4.8889 18 8 5.2696 2.0235 5.8659 19 7 5.8734 1.8537 3.0919 20 6 6.9901 1.6636 3.8613 21 1 7.0591 2.1237 4.8360 22 6 8.0356 0.8838 3.3864 23 7 7.9514 0.3226 2.1988 24 14 9.5622 0.6306 4.4329 25 1 9.4098 1.3627 5.7158 26 1 9.7397 -0.8180 4.7071 27 1 10.7508 1.1464 3.7073 28 6 3.6528 2.7268 2.5461 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5139 -0.8898 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6766 1.9564 -0.8900 36 1 4.2898 1.4529 -1.9969 37 1 4.8672 -0.4090 -3.2812 38 1 4.7299 -1.9525 -2.6320 39 1 5.1650 5.0950 0.5700 40 1 3.9715 5.4662 1.8409 41 1 6.6566 4.0604 2.2135 42 1 6.2256 5.6933 2.7763 43 1 4.4460 4.7137 4.2149 44 1 6.0510 4.0653 4.6282 45 1 3.4067 2.6813 5.2616 46 1 3.8691 1.0583 4.6942 47 1 4.9967 1.6494 6.7148 48 1 5.8131 1.4438 2.2149 49 1 8.6818 -0.2226 1.8671 50 1 3.3590 1.7125 2.2760 51 1 2.7947 3.2621 2.9525 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502597159.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:27 Heat of formation + Delta-G solvation = -131.077742 kcal Electronic energy + Delta-G solvation = -33532.024977 eV Core-core repulsion = 29272.526939 eV Total energy + Delta-G solvation = -4259.498038 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.90486 -40.68494 -39.37494 -37.09820 -36.79981 -35.46348 -34.95445 -33.83458 -33.71358 -33.03780 -30.48980 -30.00720 -26.93696 -26.55850 -25.64382 -25.19431 -23.06536 -22.29088 -21.72264 -20.87890 -19.90575 -19.41516 -19.14017 -18.41228 -17.86630 -17.73551 -16.97612 -16.85263 -16.47923 -16.14492 -15.90021 -15.75906 -15.40314 -15.27914 -15.11951 -15.03253 -14.74148 -14.42031 -14.34152 -14.01331 -13.70941 -13.49756 -13.40606 -13.26304 -12.89144 -12.74697 -12.69188 -12.58891 -12.47411 -12.02743 -11.96602 -11.81891 -11.69626 -11.59439 -11.53423 -11.29528 -11.27246 -10.80545 -10.72028 -10.56251 -10.46776 -10.01642 -9.58976 -8.84572 -7.76962 -5.01023 1.35158 1.45348 1.46457 1.55988 1.76990 2.19381 2.25287 2.65322 3.24078 3.47533 3.63549 3.69878 3.78427 3.94086 3.97524 4.08248 4.12452 4.24886 4.26287 4.36722 4.43362 4.47341 4.56325 4.63483 4.68519 4.69460 4.75399 4.83113 4.87382 4.91446 5.00372 5.06236 5.07547 5.28729 5.29464 5.31990 5.42277 5.52952 5.57101 5.58841 5.70096 5.87597 5.94370 6.07200 6.31284 6.45268 6.99995 7.08585 7.21659 7.52308 7.69851 8.24322 8.45298 9.46722 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.009759 B = 0.004821 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2868.381535 B = 5806.024582 C = 6766.087809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 C -0.113 4.113 4 C 0.151 3.849 5 H 0.085 0.915 6 N -0.722 5.722 7 C 0.702 3.298 8 N -0.849 5.849 9 O -0.624 6.624 10 C 0.518 3.482 11 O -0.572 6.572 12 N -0.589 5.589 13 C 0.120 3.880 14 C -0.123 4.123 15 C -0.108 4.108 16 C 0.171 3.829 17 C 0.076 3.924 18 O -0.569 6.569 19 N -0.714 5.714 20 C -0.174 4.174 21 H 0.095 0.905 22 C -0.096 4.096 23 N -0.978 5.978 24 Si 0.954 3.046 25 H -0.266 1.266 26 H -0.306 1.306 27 H -0.308 1.308 28 C 0.105 3.895 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.408 0.592 37 H 0.411 0.589 38 H 0.421 0.579 39 H 0.071 0.929 40 H 0.102 0.898 41 H 0.031 0.969 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.046 0.954 45 H 0.073 0.927 46 H 0.029 0.971 47 H 0.376 0.624 48 H 0.364 0.636 49 H 0.236 0.764 50 H 0.085 0.915 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.407 6.474 -3.750 18.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.148 4.148 3 C -0.152 4.152 4 C 0.041 3.959 5 H 0.103 0.897 6 N -0.380 5.380 7 C 0.400 3.600 8 N -0.418 5.418 9 O -0.505 6.505 10 C 0.306 3.694 11 O -0.452 6.452 12 N -0.320 5.320 13 C -0.002 4.002 14 C -0.162 4.162 15 C -0.148 4.148 16 C 0.080 3.920 17 C -0.004 4.004 18 O -0.375 6.375 19 N -0.352 5.352 20 C -0.306 4.306 21 H 0.113 0.887 22 C -0.286 4.286 23 N -0.632 5.632 24 Si 0.787 3.213 25 H -0.191 1.191 26 H -0.235 1.235 27 H -0.236 1.236 28 C -0.017 4.017 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.245 0.755 37 H 0.241 0.759 38 H 0.254 0.746 39 H 0.089 0.911 40 H 0.120 0.880 41 H 0.050 0.950 42 H 0.100 0.900 43 H 0.103 0.897 44 H 0.065 0.935 45 H 0.091 0.909 46 H 0.048 0.952 47 H 0.224 0.776 48 H 0.195 0.805 49 H 0.045 0.955 50 H 0.103 0.897 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -17.060 6.654 -3.712 18.685 hybrid contribution 1.794 -1.084 -0.194 2.105 sum -15.266 5.571 -3.907 16.714 Atomic orbital electron populations 1.21749 0.94174 1.01819 1.02445 1.21446 0.96415 0.95069 1.01837 1.21967 0.90280 0.98780 1.04144 1.20660 0.96598 0.90553 0.88097 0.89682 1.44648 1.71409 1.05416 1.16565 1.16037 0.77991 0.82207 0.83728 1.42712 1.72363 1.12295 1.14412 1.90966 1.58506 1.60309 1.40682 1.20663 0.77310 0.88308 0.83168 1.90609 1.51640 1.65039 1.37922 1.47868 1.59337 1.18615 1.06172 1.21684 0.96224 0.82804 0.99488 1.21721 0.97784 1.00718 0.95931 1.21759 1.00664 0.95808 0.96535 1.20449 0.88241 0.91542 0.91722 1.22628 0.89486 0.98757 0.89517 1.86728 1.38741 1.86342 1.25708 1.42540 1.16334 1.57804 1.18547 1.19823 0.92620 1.20084 0.98088 0.88695 1.25372 1.01646 1.03323 0.98214 1.69849 1.32916 1.40462 1.19991 0.85296 0.80928 0.76373 0.78701 1.19089 1.23473 1.23617 1.22168 0.96379 0.98455 0.84735 0.92889 0.91531 0.92153 0.93236 0.93483 0.88745 0.90273 0.75478 0.75871 0.74630 0.91083 0.87995 0.95015 0.89997 0.89682 0.93537 0.90901 0.95232 0.77626 0.80482 0.95483 0.89719 0.85843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.91 71.98 0.71 -2.01 16 2 C -0.11 -2.81 4.55 30.59 0.14 -2.67 16 3 C -0.11 -2.68 4.59 30.59 0.14 -2.54 16 4 C 0.15 4.72 1.79 44.24 0.08 4.80 16 5 H 0.09 3.30 6.07 -2.39 -0.01 3.28 16 6 N -0.72 -22.09 5.01 -461.40 -2.31 -24.40 16 7 C 0.70 22.94 7.43 179.05 1.33 24.27 16 8 N -0.85 -19.22 8.88 -184.74 -1.64 -20.86 16 9 O -0.62 -25.64 14.32 -3.99 -0.06 -25.69 16 10 C 0.52 17.18 6.92 87.66 0.61 17.79 16 11 O -0.57 -21.28 15.40 -3.04 -0.05 -21.33 16 12 N -0.59 -17.55 2.87 -818.90 -2.35 -19.90 16 13 C 0.12 3.34 6.42 86.36 0.55 3.90 16 14 C -0.12 -3.99 5.93 30.67 0.18 -3.81 16 15 C -0.11 -3.38 4.39 30.62 0.13 -3.25 16 16 C 0.17 5.78 0.68 3.68 0.00 5.78 16 17 C 0.08 2.26 6.08 71.98 0.44 2.70 16 18 O -0.57 -19.26 9.97 -148.98 -1.49 -20.75 16 19 N -0.71 -33.84 4.22 -302.98 -1.28 -35.12 16 20 C -0.17 -9.42 8.28 84.03 0.70 -8.73 16 21 H 0.10 5.09 5.31 -2.91 -0.02 5.08 16 22 C -0.10 -5.69 5.50 84.86 0.47 -5.23 16 23 N -0.98 -62.97 13.06 21.65 0.28 -62.68 16 24 Si 0.95 49.23 29.55 68.60 2.03 51.25 16 25 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 26 H -0.31 -16.10 7.11 99.48 0.71 -15.39 16 27 H -0.31 -16.16 7.11 99.48 0.71 -15.46 16 28 C 0.11 2.81 4.36 86.36 0.38 3.18 16 29 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.05 1.45 5.63 -2.39 -0.01 1.44 16 33 H 0.05 1.43 7.87 -2.38 -0.02 1.41 16 34 H 0.09 1.84 7.13 -2.39 -0.02 1.82 16 35 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.41 11.34 7.77 -92.71 -0.72 10.62 16 37 H 0.41 6.62 8.84 -92.71 -0.82 5.80 16 38 H 0.42 8.49 8.93 -92.71 -0.83 7.67 16 39 H 0.07 2.22 7.04 -2.38 -0.02 2.21 16 40 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 41 H 0.03 1.38 7.53 -2.39 -0.02 1.36 16 42 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 44 H 0.05 1.74 6.83 -2.39 -0.02 1.72 16 45 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.38 9.00 9.12 -74.06 -0.68 8.33 16 48 H 0.36 19.65 7.65 -92.71 -0.71 18.95 16 49 H 0.24 15.19 8.31 -92.71 -0.77 14.42 16 50 H 0.08 2.39 5.07 -2.39 -0.01 2.38 16 51 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -82.64 391.94 -3.73 -86.37 By element: Atomic # 1 Polarization: 61.67 SS G_CDS: -2.74 Total: 58.93 kcal Atomic # 6 Polarization: 28.32 SS G_CDS: 5.86 Total: 34.18 kcal Atomic # 7 Polarization: -155.67 SS G_CDS: -7.29 Total: -162.96 kcal Atomic # 8 Polarization: -66.18 SS G_CDS: -1.59 Total: -67.77 kcal Atomic # 14 Polarization: 49.23 SS G_CDS: 2.03 Total: 51.25 kcal Total: -82.64 -3.73 -86.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502597159.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.703 kcal (2) G-P(sol) polarization free energy of solvation -82.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds