Wall clock time and date at job start Wed Apr 1 2020 02:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46659 * 2 1 4 4 N 1.46492 * 109.47280 * 119.99701 * 2 1 3 5 5 C 1.36933 * 120.00677 * 296.26537 * 4 2 1 6 6 H 1.07999 * 119.99662 * 39.79784 * 5 4 2 7 7 C 1.38807 * 120.00377 * 219.80676 * 5 4 2 8 8 N 1.31620 * 120.00414 * 200.52398 * 7 5 4 9 9 Si 1.86807 * 120.00007 * 20.52456 * 7 5 4 10 10 H 1.48503 * 109.46897 * 264.71961 * 9 7 5 11 11 H 1.48503 * 109.47045 * 144.71835 * 9 7 5 12 12 H 1.48494 * 109.46958 * 24.71675 * 9 7 5 13 13 C 1.46501 * 119.99679 * 116.26340 * 4 2 1 14 14 C 1.53003 * 109.47013 * 269.99774 * 13 4 2 15 15 C 1.53007 * 109.46914 * 179.97438 * 14 13 4 16 16 N 1.46499 * 109.46891 * 180.02562 * 15 14 13 17 17 C 1.34777 * 119.99865 * 180.02562 * 16 15 14 18 18 O 1.21278 * 119.99961 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99804 * 179.97438 * 17 16 15 20 20 H 1.08999 * 115.54126 * 325.59031 * 19 17 16 21 21 C 1.53042 * 117.48129 * 179.97438 * 19 17 16 22 22 H 1.08992 * 119.41407 * 140.82167 * 21 19 17 23 23 C 1.53448 * 118.57964 * 343.84138 * 21 19 17 24 24 C 1.50964 * 107.03554 * 297.01118 * 23 21 19 25 25 C 1.38790 * 129.72068 * 179.64134 * 24 23 21 26 26 C 1.38020 * 120.30982 * 180.09745 * 25 24 23 27 27 C 1.38247 * 119.87922 * 359.97438 * 26 25 24 28 28 C 1.38014 * 119.88879 * 359.97438 * 27 26 25 29 29 C 1.37807 * 110.46616 * 359.70230 * 24 23 21 30 30 C 1.50942 * 110.47628 * 359.91442 * 29 24 23 31 31 H 1.09006 * 117.44325 * 220.73803 * 30 29 24 32 32 H 1.09000 * 109.47176 * 305.30559 * 1 2 3 33 33 H 1.08993 * 109.47339 * 65.30631 * 1 2 3 34 34 H 1.08998 * 109.46570 * 185.30851 * 1 2 3 35 35 H 1.08994 * 109.47078 * 240.00645 * 2 1 3 36 36 H 1.09005 * 109.46771 * 184.08181 * 3 2 1 37 37 H 1.08998 * 109.47295 * 304.07886 * 3 2 1 38 38 H 1.08998 * 109.47296 * 64.08220 * 3 2 1 39 39 H 0.96999 * 120.00374 * 179.97438 * 8 7 5 40 40 H 1.08995 * 109.47403 * 30.00205 * 13 4 2 41 41 H 1.09011 * 109.47333 * 150.00432 * 13 4 2 42 42 H 1.08990 * 109.47510 * 299.99968 * 14 13 4 43 43 H 1.08997 * 109.46609 * 60.00426 * 14 13 4 44 44 H 1.08995 * 109.47579 * 300.00478 * 15 14 13 45 45 H 1.08998 * 109.46854 * 60.00292 * 15 14 13 46 46 H 0.96997 * 120.00040 * 359.97438 * 16 15 14 47 47 H 1.09003 * 109.91561 * 56.35615 * 23 21 19 48 48 H 1.09000 * 109.91867 * 177.65998 * 23 21 19 49 49 H 1.08000 * 119.84647 * 0.09784 * 25 24 23 50 50 H 1.07993 * 120.05689 * 179.97438 * 26 25 24 51 51 H 1.07997 * 120.06101 * 179.97438 * 27 26 25 52 52 H 1.08001 * 119.84628 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 1.7519 -0.1798 2.4384 6 1 0.7833 0.2486 2.6497 7 6 2.7267 -0.2125 3.4260 8 7 2.3839 -0.1117 4.6928 9 14 4.5253 -0.3996 2.9573 10 1 4.9105 -1.8318 3.0344 11 1 5.3655 0.3900 3.8932 12 1 4.7297 0.0940 1.5718 13 6 2.7918 -1.9276 1.0632 14 6 1.8415 -3.1266 1.0714 15 6 2.6493 -4.4186 0.9319 16 7 1.7393 -5.5666 0.9391 17 6 2.2306 -6.8167 0.8281 18 8 3.4261 -6.9911 0.7218 19 6 1.2945 -7.9977 0.8361 20 1 0.4147 -7.8957 1.4713 21 6 1.9143 -9.3909 0.7059 22 1 1.5090 -10.2141 1.2942 23 6 3.3601 -9.5074 0.2053 24 6 3.3856 -8.9646 -1.2031 25 6 4.4484 -8.8419 -2.0873 26 6 4.2502 -8.3089 -3.3449 27 6 2.9874 -7.8956 -3.7266 28 6 1.9292 -8.0178 -2.8491 29 6 2.1268 -8.5527 -1.5836 30 6 1.1365 -8.7818 -0.4678 31 1 0.1511 -9.1599 -0.7403 32 1 -0.3633 0.5939 0.8387 33 1 -0.3633 0.4293 -0.9336 34 1 -0.3632 -1.0233 0.0951 35 1 1.8933 -0.5137 -0.8900 36 1 3.1275 1.4435 -0.0732 37 1 1.6181 1.9771 -0.8512 38 1 1.7375 1.9349 0.9243 39 1 3.0651 -0.1349 5.3830 40 1 3.3468 -1.9101 0.1253 41 1 3.4894 -2.0113 1.8967 42 1 1.2866 -3.1441 2.0093 43 1 1.1440 -3.0429 0.2380 44 1 3.2039 -4.4009 -0.0062 45 1 3.3471 -4.5024 1.7650 46 1 0.7832 -5.4271 1.0245 47 1 4.0219 -8.9199 0.8418 48 1 3.6704 -10.5523 0.2064 49 1 5.4351 -9.1650 -1.7898 50 1 5.0802 -8.2150 -4.0294 51 1 2.8292 -7.4778 -4.7098 52 1 0.9429 -7.6951 -3.1481 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567649384.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:11 Heat of formation + Delta-G solvation = 37.947001 kcal Electronic energy + Delta-G solvation = -29984.828870 eV Core-core repulsion = 26143.509558 eV Total energy + Delta-G solvation = -3841.319312 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.39361 -38.97196 -37.23397 -36.77850 -34.95823 -32.57126 -32.04250 -31.62014 -30.66793 -29.31999 -27.81539 -26.32152 -25.83605 -24.26584 -23.21681 -22.41141 -21.33279 -21.18906 -20.55044 -19.60252 -19.42386 -17.31346 -16.52497 -16.14504 -15.97235 -15.58245 -15.44121 -15.05770 -14.96284 -14.67509 -14.51861 -13.84324 -13.66725 -13.44556 -13.33860 -13.08240 -13.04843 -12.77342 -12.48514 -12.27184 -12.14571 -11.99253 -11.86818 -11.77635 -11.40293 -11.38064 -11.14730 -10.94189 -10.82405 -10.77163 -10.69990 -10.46942 -10.43434 -10.39871 -9.91354 -9.69599 -9.47049 -9.40655 -8.90659 -8.80248 -8.52232 -8.48845 -6.77593 -5.98689 -3.43253 1.20826 1.34335 2.54072 3.22990 3.32765 3.41114 3.48184 3.53190 3.74503 4.16201 4.32428 4.53092 4.60658 4.71268 4.87556 4.88264 4.91213 4.93316 5.00282 5.22376 5.31705 5.33168 5.44504 5.51246 5.54281 5.61776 5.66056 5.71654 5.80138 5.85355 5.86542 6.00294 6.03671 6.06781 6.14770 6.18937 6.28334 6.33308 6.34986 6.35608 6.42359 6.55401 6.57431 6.63720 6.66420 6.71301 6.77985 6.91873 6.91931 7.10828 7.17658 7.65512 8.08933 8.36940 8.42676 9.01539 9.72929 10.15077 11.16718 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013425 B = 0.002687 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.149706 B =10416.316524 C =10962.881786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.166 3.834 3 C -0.153 4.153 4 N -0.601 5.601 5 C -0.261 4.261 6 H 0.078 0.922 7 C 0.038 3.962 8 N -0.902 5.902 9 Si 0.875 3.125 10 H -0.286 1.286 11 H -0.303 1.303 12 H -0.268 1.268 13 C 0.143 3.857 14 C -0.144 4.144 15 C 0.120 3.880 16 N -0.721 5.721 17 C 0.537 3.463 18 O -0.533 6.533 19 C -0.157 4.157 20 H 0.134 0.866 21 C -0.121 4.121 22 H 0.130 0.870 23 C -0.062 4.062 24 C -0.055 4.055 25 C -0.110 4.110 26 C -0.114 4.114 27 C -0.130 4.130 28 C -0.097 4.097 29 C -0.084 4.084 30 C -0.098 4.098 31 H 0.125 0.875 32 H 0.056 0.944 33 H 0.037 0.963 34 H 0.046 0.954 35 H 0.047 0.953 36 H 0.042 0.958 37 H 0.037 0.963 38 H 0.065 0.935 39 H 0.262 0.738 40 H 0.039 0.961 41 H 0.054 0.946 42 H 0.075 0.925 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.064 0.936 46 H 0.399 0.601 47 H 0.111 0.889 48 H 0.077 0.923 49 H 0.118 0.882 50 H 0.122 0.878 51 H 0.122 0.878 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.657 -18.815 -13.674 23.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.060 3.940 3 C -0.212 4.212 4 N -0.324 5.324 5 C -0.389 4.389 6 H 0.096 0.904 7 C -0.163 4.163 8 N -0.543 5.543 9 Si 0.705 3.295 10 H -0.214 1.214 11 H -0.231 1.231 12 H -0.193 1.193 13 C 0.017 3.983 14 C -0.185 4.185 15 C -0.004 4.004 16 N -0.372 5.372 17 C 0.323 3.677 18 O -0.410 6.410 19 C -0.178 4.178 20 H 0.152 0.848 21 C -0.140 4.140 22 H 0.147 0.853 23 C -0.098 4.098 24 C -0.055 4.055 25 C -0.129 4.129 26 C -0.132 4.132 27 C -0.148 4.148 28 C -0.115 4.115 29 C -0.084 4.084 30 C -0.116 4.116 31 H 0.142 0.858 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.233 0.767 47 H 0.129 0.871 48 H 0.095 0.905 49 H 0.136 0.864 50 H 0.140 0.860 51 H 0.140 0.860 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.718 -18.877 -13.579 23.317 hybrid contribution 0.429 0.128 0.001 0.448 sum -1.288 -18.749 -13.578 23.185 Atomic orbital electron populations 1.22164 0.98115 1.00982 0.99951 1.20397 0.92593 0.92101 0.88929 1.22110 1.00198 0.97946 1.00950 1.44219 1.63963 1.21574 1.02615 1.18639 0.97468 1.37068 0.85764 0.90430 1.25508 0.97602 0.97986 0.95159 1.69846 1.33356 1.51994 0.99146 0.86954 0.87231 0.76835 0.78441 1.21390 1.23075 1.19284 1.21058 0.92914 0.85411 0.98947 1.22410 0.99949 0.93394 1.02716 1.21444 0.92776 0.84528 1.01624 1.46060 1.11041 1.05857 1.74219 1.19618 0.88457 0.83461 0.76184 1.90641 1.15903 1.85187 1.49236 1.22414 1.01882 0.92070 1.01406 0.84846 1.22909 0.95632 0.94641 1.00782 0.85263 1.20446 0.95809 1.00751 0.92818 1.20352 0.93172 0.97156 0.94818 1.20605 0.98109 1.00656 0.93481 1.21009 0.97161 0.98773 0.96230 1.20952 0.92933 1.01339 0.99623 1.20631 0.99140 0.98980 0.92759 1.19577 0.94012 1.00862 0.93958 1.21435 0.99618 1.03576 0.87020 0.85751 0.92522 0.94435 0.93534 0.93434 0.93848 0.94447 0.91549 0.92777 0.94284 0.92832 0.90618 0.92277 0.92139 0.91738 0.76671 0.87123 0.90516 0.86362 0.86044 0.86033 0.86443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.13 37.16 0.34 -2.34 16 2 C 0.17 3.20 3.37 -67.93 -0.23 2.97 16 3 C -0.15 -2.89 9.18 37.16 0.34 -2.55 16 4 N -0.60 -13.56 1.98 -165.66 -0.33 -13.89 16 5 C -0.26 -6.93 8.47 -15.06 -0.13 -7.06 16 6 H 0.08 2.25 7.31 -52.49 -0.38 1.86 16 7 C 0.04 1.07 5.32 -17.43 -0.09 0.97 16 8 N -0.90 -27.06 13.97 55.49 0.78 -26.28 16 9 Si 0.87 22.17 25.03 -169.99 -4.25 17.91 16 10 H -0.29 -7.13 6.70 56.52 0.38 -6.75 16 11 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 12 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.14 2.98 4.47 -4.04 -0.02 2.96 16 14 C -0.14 -2.53 5.65 -26.73 -0.15 -2.68 16 15 C 0.12 1.95 5.67 -4.04 -0.02 1.93 16 16 N -0.72 -9.93 5.56 -60.29 -0.33 -10.27 16 17 C 0.54 7.62 6.92 -10.99 -0.08 7.55 16 18 O -0.53 -9.21 12.55 5.56 0.07 -9.14 16 19 C -0.16 -1.61 6.18 -91.77 -0.57 -2.18 16 20 H 0.13 1.02 8.14 -51.93 -0.42 0.60 16 21 C -0.12 -1.15 7.06 -90.15 -0.64 -1.79 16 22 H 0.13 0.88 8.14 -51.93 -0.42 0.46 16 23 C -0.06 -0.69 5.77 -27.52 -0.16 -0.85 16 24 C -0.05 -0.69 4.87 -104.45 -0.51 -1.19 16 25 C -0.11 -1.31 10.04 -39.46 -0.40 -1.71 16 26 C -0.11 -1.24 10.05 -39.66 -0.40 -1.64 16 27 C -0.13 -1.40 10.04 -39.66 -0.40 -1.79 16 28 C -0.10 -1.09 10.04 -39.46 -0.40 -1.49 16 29 C -0.08 -1.00 5.27 -104.46 -0.55 -1.55 16 30 C -0.10 -0.95 6.85 -91.46 -0.63 -1.58 16 31 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 1.08 7.37 -51.93 -0.38 0.70 16 33 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.84 7.77 -51.93 -0.40 0.44 16 36 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 1.38 7.44 -51.93 -0.39 1.00 16 39 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.04 0.75 7.89 -51.93 -0.41 0.34 16 41 H 0.05 1.25 3.43 -51.92 -0.18 1.07 16 42 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.40 4.52 8.47 -40.82 -0.35 4.17 16 47 H 0.11 1.48 6.21 -51.93 -0.32 1.16 16 48 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 50 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 51 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 52 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 408.47 15.07 6.16 6.16 Total: -1.00 -32.22 408.47 -11.33 -43.55 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -8.73 Total: 5.98 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -4.67 Total: -14.02 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: 0.11 Total: -50.44 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.07 Total: -9.14 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.25 Total: 17.91 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.22 -11.33 -43.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567649384.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.493 kcal (2) G-P(sol) polarization free energy of solvation -32.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds