Wall clock time and date at job start Wed Apr 1 2020 02:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46659 * 2 1 4 4 N 1.46492 * 109.47280 * 119.99701 * 2 1 3 5 5 C 1.36933 * 120.00677 * 296.26537 * 4 2 1 6 6 H 1.07999 * 119.99662 * 39.79784 * 5 4 2 7 7 C 1.38807 * 120.00377 * 219.80676 * 5 4 2 8 8 N 1.31620 * 120.00414 * 200.52398 * 7 5 4 9 9 Si 1.86807 * 120.00007 * 20.52456 * 7 5 4 10 10 H 1.48503 * 109.46897 * 264.71961 * 9 7 5 11 11 H 1.48503 * 109.47045 * 144.71835 * 9 7 5 12 12 H 1.48494 * 109.46958 * 24.71675 * 9 7 5 13 13 C 1.46501 * 119.99679 * 116.26340 * 4 2 1 14 14 C 1.53003 * 109.47013 * 269.99774 * 13 4 2 15 15 C 1.53007 * 109.46914 * 179.97438 * 14 13 4 16 16 N 1.46499 * 109.46891 * 180.02562 * 15 14 13 17 17 C 1.34777 * 119.99865 * 180.02562 * 16 15 14 18 18 O 1.21278 * 119.99961 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99804 * 179.97438 * 17 16 15 20 20 H 1.08999 * 115.54126 * 325.59031 * 19 17 16 21 21 C 1.53042 * 117.48129 * 179.97438 * 19 17 16 22 22 H 1.08992 * 119.41407 * 140.82167 * 21 19 17 23 23 C 1.53448 * 118.57964 * 343.84138 * 21 19 17 24 24 C 1.50964 * 107.03554 * 297.01118 * 23 21 19 25 25 C 1.38790 * 129.72068 * 179.64134 * 24 23 21 26 26 C 1.38020 * 120.30982 * 180.09745 * 25 24 23 27 27 C 1.38247 * 119.87922 * 359.97438 * 26 25 24 28 28 C 1.38014 * 119.88879 * 359.97438 * 27 26 25 29 29 C 1.37807 * 110.46616 * 359.70230 * 24 23 21 30 30 C 1.50942 * 110.47628 * 359.91442 * 29 24 23 31 31 H 1.09006 * 117.44325 * 220.73803 * 30 29 24 32 32 H 1.09000 * 109.47176 * 305.30559 * 1 2 3 33 33 H 1.08993 * 109.47339 * 65.30631 * 1 2 3 34 34 H 1.08998 * 109.46570 * 185.30851 * 1 2 3 35 35 H 1.08994 * 109.47078 * 240.00645 * 2 1 3 36 36 H 1.09005 * 109.46771 * 184.08181 * 3 2 1 37 37 H 1.08998 * 109.47295 * 304.07886 * 3 2 1 38 38 H 1.08998 * 109.47296 * 64.08220 * 3 2 1 39 39 H 0.96999 * 120.00374 * 179.97438 * 8 7 5 40 40 H 1.08995 * 109.47403 * 30.00205 * 13 4 2 41 41 H 1.09011 * 109.47333 * 150.00432 * 13 4 2 42 42 H 1.08990 * 109.47510 * 299.99968 * 14 13 4 43 43 H 1.08997 * 109.46609 * 60.00426 * 14 13 4 44 44 H 1.08995 * 109.47579 * 300.00478 * 15 14 13 45 45 H 1.08998 * 109.46854 * 60.00292 * 15 14 13 46 46 H 0.96997 * 120.00040 * 359.97438 * 16 15 14 47 47 H 1.09003 * 109.91561 * 56.35615 * 23 21 19 48 48 H 1.09000 * 109.91867 * 177.65998 * 23 21 19 49 49 H 1.08000 * 119.84647 * 0.09784 * 25 24 23 50 50 H 1.07993 * 120.05689 * 179.97438 * 26 25 24 51 51 H 1.07997 * 120.06101 * 179.97438 * 27 26 25 52 52 H 1.08001 * 119.84628 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 1.7519 -0.1798 2.4384 6 1 0.7833 0.2486 2.6497 7 6 2.7267 -0.2125 3.4260 8 7 2.3839 -0.1117 4.6928 9 14 4.5253 -0.3996 2.9573 10 1 4.9105 -1.8318 3.0344 11 1 5.3655 0.3900 3.8932 12 1 4.7297 0.0940 1.5718 13 6 2.7918 -1.9276 1.0632 14 6 1.8415 -3.1266 1.0714 15 6 2.6493 -4.4186 0.9319 16 7 1.7393 -5.5666 0.9391 17 6 2.2306 -6.8167 0.8281 18 8 3.4261 -6.9911 0.7218 19 6 1.2945 -7.9977 0.8361 20 1 0.4147 -7.8957 1.4713 21 6 1.9143 -9.3909 0.7059 22 1 1.5090 -10.2141 1.2942 23 6 3.3601 -9.5074 0.2053 24 6 3.3856 -8.9646 -1.2031 25 6 4.4484 -8.8419 -2.0873 26 6 4.2502 -8.3089 -3.3449 27 6 2.9874 -7.8956 -3.7266 28 6 1.9292 -8.0178 -2.8491 29 6 2.1268 -8.5527 -1.5836 30 6 1.1365 -8.7818 -0.4678 31 1 0.1511 -9.1599 -0.7403 32 1 -0.3633 0.5939 0.8387 33 1 -0.3633 0.4293 -0.9336 34 1 -0.3632 -1.0233 0.0951 35 1 1.8933 -0.5137 -0.8900 36 1 3.1275 1.4435 -0.0732 37 1 1.6181 1.9771 -0.8512 38 1 1.7375 1.9349 0.9243 39 1 3.0651 -0.1349 5.3830 40 1 3.3468 -1.9101 0.1253 41 1 3.4894 -2.0113 1.8967 42 1 1.2866 -3.1441 2.0093 43 1 1.1440 -3.0429 0.2380 44 1 3.2039 -4.4009 -0.0062 45 1 3.3471 -4.5024 1.7650 46 1 0.7832 -5.4271 1.0245 47 1 4.0219 -8.9199 0.8418 48 1 3.6704 -10.5523 0.2064 49 1 5.4351 -9.1650 -1.7898 50 1 5.0802 -8.2150 -4.0294 51 1 2.8292 -7.4778 -4.7098 52 1 0.9429 -7.6951 -3.1481 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567649384.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:10 Heat of formation + Delta-G solvation = 20.391854 kcal Electronic energy + Delta-G solvation = -29985.590118 eV Core-core repulsion = 26143.509558 eV Total energy + Delta-G solvation = -3842.080560 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.24037 -40.01694 -38.79152 -37.75411 -36.25540 -34.30703 -33.58313 -32.64752 -31.54379 -30.88553 -28.64860 -27.78656 -27.34268 -25.67878 -24.54202 -23.39907 -22.68012 -22.14303 -21.29374 -21.18022 -20.65136 -18.45235 -18.12732 -17.33432 -16.98281 -16.94580 -16.69791 -16.36404 -16.22401 -15.82294 -15.61154 -15.21764 -14.88266 -14.81704 -14.60615 -14.30292 -14.05970 -14.00553 -13.94766 -13.56398 -13.50146 -13.40436 -13.15459 -12.90171 -12.72398 -12.66004 -12.60195 -12.36184 -12.19400 -12.17197 -12.02287 -11.74762 -11.68519 -11.55485 -11.40118 -11.24979 -11.24051 -10.59285 -10.49205 -10.09839 -9.64280 -9.36302 -8.67316 -8.16385 -5.55597 0.38222 0.50649 1.28849 1.39202 1.48674 1.53924 2.17403 2.42702 2.57687 2.94776 3.08759 3.33223 3.39119 3.55529 3.79356 3.97126 4.00998 4.04410 4.15413 4.17447 4.18478 4.25419 4.29592 4.39016 4.50130 4.54063 4.57290 4.60190 4.70283 4.70686 4.73966 4.80243 4.84322 4.90514 4.96500 4.97689 5.08108 5.08648 5.14694 5.18952 5.19981 5.25084 5.33877 5.39465 5.50526 5.54975 5.59829 5.60488 5.64531 5.74676 6.01726 6.12427 6.27688 6.60099 7.06389 7.30822 7.69852 8.12704 9.03328 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013425 B = 0.002687 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.149706 B =10416.316524 C =10962.881786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.156 3.844 3 C -0.149 4.149 4 N -0.612 5.612 5 C -0.231 4.231 6 H 0.046 0.954 7 C -0.016 4.016 8 N -0.951 5.951 9 Si 0.929 3.071 10 H -0.284 1.284 11 H -0.314 1.314 12 H -0.257 1.257 13 C 0.135 3.865 14 C -0.123 4.123 15 C 0.133 3.867 16 N -0.716 5.716 17 C 0.528 3.472 18 O -0.569 6.569 19 C -0.160 4.160 20 H 0.166 0.834 21 C -0.119 4.119 22 H 0.162 0.838 23 C -0.065 4.065 24 C -0.079 4.079 25 C -0.134 4.134 26 C -0.123 4.123 27 C -0.138 4.138 28 C -0.109 4.109 29 C -0.102 4.102 30 C -0.090 4.090 31 H 0.155 0.845 32 H 0.030 0.970 33 H 0.071 0.929 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.034 0.966 37 H 0.073 0.927 38 H 0.036 0.964 39 H 0.259 0.741 40 H 0.062 0.938 41 H 0.027 0.973 42 H 0.054 0.946 43 H 0.080 0.920 44 H 0.059 0.941 45 H 0.039 0.961 46 H 0.413 0.587 47 H 0.082 0.918 48 H 0.092 0.908 49 H 0.122 0.878 50 H 0.140 0.860 51 H 0.144 0.856 52 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.062 -20.133 -16.432 26.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.051 3.949 3 C -0.208 4.208 4 N -0.335 5.335 5 C -0.361 4.361 6 H 0.064 0.936 7 C -0.212 4.212 8 N -0.596 5.596 9 Si 0.760 3.240 10 H -0.212 1.212 11 H -0.243 1.243 12 H -0.181 1.181 13 C 0.009 3.991 14 C -0.164 4.164 15 C 0.008 3.992 16 N -0.368 5.368 17 C 0.316 3.684 18 O -0.449 6.449 19 C -0.181 4.181 20 H 0.184 0.816 21 C -0.137 4.137 22 H 0.179 0.821 23 C -0.101 4.101 24 C -0.079 4.079 25 C -0.152 4.152 26 C -0.141 4.141 27 C -0.156 4.156 28 C -0.127 4.127 29 C -0.102 4.102 30 C -0.108 4.108 31 H 0.172 0.828 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.053 0.947 37 H 0.092 0.908 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.045 0.955 42 H 0.072 0.928 43 H 0.099 0.901 44 H 0.077 0.923 45 H 0.057 0.943 46 H 0.249 0.751 47 H 0.100 0.900 48 H 0.110 0.890 49 H 0.140 0.860 50 H 0.158 0.842 51 H 0.161 0.839 52 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.148 -20.207 -16.387 26.206 hybrid contribution 0.849 0.550 0.741 1.254 sum -2.300 -19.657 -15.646 25.228 Atomic orbital electron populations 1.22052 0.96630 1.00928 1.00688 1.20694 0.93694 0.92212 0.88265 1.22065 0.99776 0.97921 1.01006 1.44376 1.64109 1.22686 1.02309 1.18471 0.95754 1.34608 0.87273 0.93603 1.25995 1.00756 0.99331 0.95076 1.69958 1.34096 1.55369 1.00143 0.86063 0.83256 0.76555 0.78150 1.21201 1.24333 1.18117 1.21136 0.93155 0.85869 0.98904 1.22103 0.99233 0.92620 1.02406 1.21100 0.92597 0.85052 1.00474 1.45956 1.11415 1.05274 1.74124 1.20381 0.88683 0.84281 0.75040 1.90643 1.17802 1.85740 1.50671 1.22520 1.02184 0.90504 1.02862 0.81639 1.23114 0.94501 0.95013 1.01109 0.82074 1.20453 0.96729 1.01074 0.91888 1.20661 0.93850 0.97864 0.95479 1.20882 0.98534 1.01462 0.94284 1.21318 0.98171 0.98399 0.96213 1.21305 0.92736 1.00972 1.00615 1.20964 1.00188 0.98787 0.92723 1.19950 0.94458 1.00854 0.94909 1.21581 1.00446 1.02772 0.86001 0.82761 0.95081 0.90991 0.93371 0.90660 0.94709 0.90822 0.94508 0.93181 0.92008 0.95538 0.92766 0.90104 0.92268 0.94253 0.75070 0.90032 0.88953 0.86020 0.84205 0.83861 0.84621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.66 9.13 71.98 0.66 -4.01 16 2 C 0.16 5.61 3.37 45.00 0.15 5.76 16 3 C -0.15 -5.31 9.18 71.98 0.66 -4.65 16 4 N -0.61 -26.91 1.98 -678.04 -1.34 -28.26 16 5 C -0.23 -12.46 8.47 84.03 0.71 -11.75 16 6 H 0.05 2.75 7.31 -2.91 -0.02 2.73 16 7 C -0.02 -0.90 5.32 84.86 0.45 -0.45 16 8 N -0.95 -59.07 13.97 21.65 0.30 -58.77 16 9 Si 0.93 46.83 25.03 68.60 1.72 48.55 16 10 H -0.28 -14.07 6.70 99.48 0.67 -13.40 16 11 H -0.31 -16.27 7.11 99.48 0.71 -15.56 16 12 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 13 C 0.14 5.43 4.47 86.38 0.39 5.82 16 14 C -0.12 -4.15 5.65 30.60 0.17 -3.98 16 15 C 0.13 4.22 5.67 86.38 0.49 4.71 16 16 N -0.72 -18.70 5.56 -463.06 -2.57 -21.27 16 17 C 0.53 14.40 6.92 87.66 0.61 15.00 16 18 O -0.57 -19.82 12.55 -3.02 -0.04 -19.86 16 19 C -0.16 -2.87 6.18 -11.54 -0.07 -2.94 16 20 H 0.17 1.87 8.14 -2.39 -0.02 1.85 16 21 C -0.12 -1.97 7.06 -10.49 -0.07 -2.04 16 22 H 0.16 1.59 8.14 -2.39 -0.02 1.57 16 23 C -0.06 -1.41 5.77 30.08 0.17 -1.24 16 24 C -0.08 -1.92 4.87 -19.75 -0.10 -2.02 16 25 C -0.13 -3.19 10.04 22.35 0.22 -2.97 16 26 C -0.12 -2.58 10.05 22.22 0.22 -2.36 16 27 C -0.14 -2.73 10.04 22.22 0.22 -2.51 16 28 C -0.11 -2.23 10.04 22.35 0.22 -2.00 16 29 C -0.10 -2.25 5.27 -19.76 -0.10 -2.36 16 30 C -0.09 -1.48 6.85 -11.34 -0.08 -1.55 16 31 H 0.15 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.03 1.14 7.37 -2.39 -0.02 1.13 16 33 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 35 H 0.08 2.33 7.77 -2.39 -0.02 2.32 16 36 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.04 1.50 7.44 -2.39 -0.02 1.49 16 39 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 40 H 0.06 2.21 7.89 -2.39 -0.02 2.19 16 41 H 0.03 1.22 3.43 -2.38 -0.01 1.22 16 42 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.41 8.42 8.47 -92.71 -0.79 7.64 16 47 H 0.08 2.26 6.21 -2.39 -0.01 2.25 16 48 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.12 2.61 8.06 -2.91 -0.02 2.59 16 50 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 51 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 52 H 0.14 2.16 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -73.20 408.47 3.08 -70.12 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.08 Total: 25.01 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: 4.93 Total: -15.52 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -3.61 Total: -108.30 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.04 Total: -19.86 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.72 Total: 48.55 kcal Total: -73.20 3.08 -70.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567649384.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.509 kcal (2) G-P(sol) polarization free energy of solvation -73.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds