Wall clock time and date at job start Wed Apr 1 2020 01:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47103 * 2 1 4 4 C 1.53001 * 109.47424 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47124 * 179.97438 * 4 3 2 6 6 H 1.09005 * 109.47031 * 55.00663 * 5 4 3 7 7 N 1.46499 * 109.47522 * 295.00490 * 5 4 3 8 8 C 1.34776 * 119.99679 * 299.99989 * 7 5 4 9 9 N 1.34780 * 119.99660 * 179.97438 * 8 7 5 10 10 O 1.21588 * 120.00432 * 359.97438 * 8 7 5 11 11 C 1.50699 * 109.46995 * 175.00291 * 5 4 3 12 12 O 1.21284 * 119.99900 * 100.00428 * 11 5 4 13 13 N 1.34782 * 119.99909 * 280.27742 * 11 5 4 14 14 C 1.46505 * 119.99905 * 179.72590 * 13 11 5 15 15 C 1.52998 * 109.47148 * 185.56367 * 14 13 11 16 16 H 1.08997 * 109.67763 * 304.00166 * 15 14 13 17 17 C 1.53291 * 109.68291 * 183.48489 * 15 14 13 18 18 O 1.42962 * 109.22411 * 187.97506 * 17 15 14 19 19 C 1.42960 * 114.16502 * 62.57739 * 18 17 15 20 20 C 1.53300 * 109.22651 * 297.41853 * 19 18 17 21 21 N 1.47151 * 109.67994 * 64.55382 * 15 14 13 22 22 C 1.36936 * 120.98580 * 350.24094 * 21 15 14 23 23 H 1.07997 * 119.99802 * 322.87777 * 22 21 15 24 24 C 1.38817 * 120.00202 * 142.88165 * 22 21 15 25 25 N 1.31625 * 119.99662 * 344.67842 * 24 22 21 26 26 Si 1.86795 * 120.00085 * 164.68198 * 24 22 21 27 27 H 1.48500 * 109.46981 * 59.99820 * 26 24 22 28 28 H 1.48500 * 109.47106 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47173 * 300.00056 * 26 24 22 30 30 H 1.08997 * 109.47320 * 299.99887 * 1 2 3 31 31 H 1.09000 * 109.47238 * 60.00437 * 1 2 3 32 32 H 1.09001 * 109.46733 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47496 * 240.00368 * 2 1 3 34 34 H 1.08995 * 109.47658 * 119.99756 * 2 1 3 35 35 H 1.08997 * 109.46941 * 59.99880 * 3 2 1 36 36 H 1.08999 * 109.47134 * 300.00528 * 3 2 1 37 37 H 1.09007 * 109.46630 * 60.00635 * 4 3 2 38 38 H 1.08991 * 109.47326 * 300.00607 * 4 3 2 39 39 H 0.96996 * 120.00146 * 119.99891 * 7 5 4 40 40 H 0.96996 * 120.00165 * 359.97438 * 9 8 7 41 41 H 0.96997 * 119.99810 * 180.02562 * 9 8 7 42 42 H 0.97001 * 120.00306 * 359.72528 * 13 11 5 43 43 H 1.08997 * 109.46813 * 305.56146 * 14 13 11 44 44 H 1.08999 * 109.47125 * 65.56164 * 14 13 11 45 45 H 1.09004 * 109.51169 * 307.89488 * 17 15 14 46 46 H 1.08996 * 109.51572 * 67.99812 * 17 15 14 47 47 H 1.08999 * 109.51256 * 57.34973 * 19 18 17 48 48 H 1.09001 * 109.51308 * 177.49588 * 19 18 17 49 49 H 1.08994 * 109.67915 * 172.02824 * 20 19 18 50 50 H 1.09002 * 109.68062 * 292.58365 * 20 19 18 51 51 H 0.96997 * 119.99296 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6449 3.4246 0.8414 7 7 3.6927 3.5395 -1.2523 8 6 4.1177 3.0434 -2.4311 9 7 3.7612 3.6451 -3.5833 10 8 4.8228 2.0531 -2.4554 11 6 5.5817 2.8871 0.1244 12 8 6.2716 3.0396 -0.8614 13 7 6.1582 2.7138 1.3303 14 6 7.6184 2.7097 1.4503 15 6 8.0110 2.3591 2.8869 16 1 7.5360 3.0558 3.5776 17 6 9.5342 2.4383 3.0398 18 8 9.9053 1.9321 4.3243 19 6 9.5797 0.5549 4.5270 20 6 8.0587 0.3792 4.4503 21 7 7.5843 0.9852 3.1960 22 6 6.7694 0.2911 2.3420 23 1 5.9803 0.8040 1.8123 24 6 6.9575 -1.0718 2.1572 25 7 8.0777 -1.6407 2.5498 26 14 5.6211 -2.0984 1.3514 27 1 5.3588 -1.5837 -0.0166 28 1 6.0641 -3.5135 1.2720 29 1 4.3776 -2.0141 2.1589 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6765 1.9564 -0.8899 37 1 3.9336 0.9287 -0.8892 38 1 3.9329 0.9289 0.8907 39 1 3.1306 4.3297 -1.2330 40 1 3.1984 4.4349 -3.5640 41 1 4.0667 3.2879 -4.4317 42 1 5.6065 2.5918 2.1187 43 1 8.0368 1.9695 0.7684 44 1 8.0064 3.6965 1.1981 45 1 10.0098 1.8410 2.2618 46 1 9.8557 3.4759 2.9498 47 1 10.0554 -0.0492 3.7545 48 1 9.9338 0.2376 5.5078 49 1 7.8108 -0.6821 4.4622 50 1 7.5886 0.8761 5.2989 51 1 8.2092 -2.5930 2.4204 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570076178.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:53 Heat of formation + Delta-G solvation = -88.549154 kcal Electronic energy + Delta-G solvation = -32825.346132 eV Core-core repulsion = 28567.692272 eV Total energy + Delta-G solvation = -4257.653860 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.31315 -38.78411 -37.98211 -36.07031 -35.14616 -34.02751 -33.50385 -33.33108 -31.52196 -30.47748 -30.10675 -27.34956 -26.80964 -24.88120 -23.28730 -22.69439 -21.87780 -21.30000 -20.63043 -19.71938 -19.29123 -18.45743 -17.45146 -16.86821 -16.04446 -15.78929 -15.56694 -15.39558 -14.88452 -14.64653 -14.53707 -14.30364 -14.13578 -14.05512 -13.80030 -13.71941 -13.60201 -13.11125 -12.93564 -12.77653 -12.52707 -12.34886 -11.81582 -11.43750 -11.36107 -11.22963 -11.14478 -10.95573 -10.80051 -10.79401 -10.58198 -10.49650 -10.32432 -10.15569 -9.98574 -9.85835 -9.50533 -9.42212 -9.38191 -9.08268 -8.57775 -8.37624 -8.10159 -6.53104 -5.83407 -3.37212 2.91301 3.26828 3.37858 3.43172 3.48687 3.54238 3.91801 4.45420 4.59036 4.70985 4.85331 4.99572 5.06596 5.14091 5.23648 5.32733 5.36096 5.42174 5.49477 5.73166 5.79131 5.81703 5.91033 5.91945 5.99458 6.01488 6.10994 6.18643 6.24520 6.29680 6.36379 6.45008 6.47071 6.53117 6.56379 6.64196 6.67900 6.81921 6.89295 7.05981 7.14569 7.21553 7.33067 7.82555 8.06782 8.12556 8.18798 8.43923 8.86346 9.00068 9.13553 9.74163 10.36735 11.22937 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.010807 B = 0.004409 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.367187 B = 6348.527026 C = 7857.444676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C -0.108 4.108 4 C -0.140 4.140 5 C 0.157 3.843 6 H 0.104 0.896 7 N -0.733 5.733 8 C 0.707 3.293 9 N -0.875 5.875 10 O -0.554 6.554 11 C 0.496 3.504 12 O -0.519 6.519 13 N -0.704 5.704 14 C 0.140 3.860 15 C 0.124 3.876 16 H 0.039 0.961 17 C 0.055 3.945 18 O -0.399 6.399 19 C 0.049 3.951 20 C 0.131 3.869 21 N -0.585 5.585 22 C -0.264 4.264 23 H 0.081 0.919 24 C 0.015 3.985 25 N -0.895 5.895 26 Si 0.888 3.112 27 H -0.274 1.274 28 H -0.292 1.292 29 H -0.281 1.281 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.395 0.605 40 H 0.390 0.610 41 H 0.411 0.589 42 H 0.402 0.598 43 H 0.078 0.922 44 H 0.051 0.949 45 H 0.049 0.951 46 H 0.076 0.924 47 H 0.061 0.939 48 H 0.071 0.929 49 H 0.096 0.904 50 H 0.008 0.992 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.592 11.212 -3.657 17.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.167 4.167 3 C -0.145 4.145 4 C -0.179 4.179 5 C 0.047 3.953 6 H 0.122 0.878 7 N -0.389 5.389 8 C 0.405 3.595 9 N -0.443 5.443 10 O -0.428 6.428 11 C 0.279 3.721 12 O -0.394 6.394 13 N -0.357 5.357 14 C 0.016 3.984 15 C 0.017 3.983 16 H 0.056 0.944 17 C -0.024 4.024 18 O -0.318 6.318 19 C -0.029 4.029 20 C 0.006 3.994 21 N -0.311 5.311 22 C -0.393 4.393 23 H 0.099 0.901 24 C -0.185 4.185 25 N -0.537 5.537 26 Si 0.717 3.283 27 H -0.199 1.199 28 H -0.218 1.218 29 H -0.207 1.207 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.113 0.887 38 H 0.101 0.899 39 H 0.228 0.772 40 H 0.217 0.783 41 H 0.243 0.757 42 H 0.237 0.763 43 H 0.096 0.904 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.094 0.906 47 H 0.079 0.921 48 H 0.089 0.911 49 H 0.114 0.886 50 H 0.026 0.974 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.313 10.360 -4.103 15.879 hybrid contribution -1.250 -0.377 -0.568 1.424 sum -12.563 9.983 -4.671 16.713 Atomic orbital electron populations 1.21750 0.96112 1.01366 1.01366 1.21550 0.95421 0.97176 1.02579 1.21511 0.94879 0.96739 1.01408 1.22063 0.95534 0.94537 1.05725 1.20682 0.92788 0.95881 0.85936 0.87832 1.44669 1.56650 1.33222 1.04379 1.15869 0.79780 0.83321 0.80502 1.42983 1.59056 1.34504 1.07801 1.91028 1.39468 1.26656 1.85618 1.20663 0.90248 0.77676 0.83537 1.90714 1.64242 1.48008 1.36394 1.45939 1.08021 1.72582 1.09137 1.21152 0.79962 0.99777 0.97470 1.21552 0.93538 0.89846 0.93316 0.94370 1.22855 0.95811 0.97793 0.85941 1.87747 1.82330 1.27546 1.34159 1.23023 0.98373 0.81374 1.00081 1.21429 0.91103 1.00563 0.86347 1.44161 1.56840 1.10418 1.19637 1.19426 1.08002 0.90647 1.21246 0.90149 1.25266 0.95927 0.98827 0.98523 1.69955 1.23075 1.10882 1.49826 0.86581 0.81849 0.79545 0.80304 1.19920 1.21805 1.20729 0.92847 0.93097 0.92988 0.92054 0.91680 0.92195 0.92299 0.88664 0.89934 0.77226 0.78350 0.75740 0.76296 0.90411 0.93063 0.93268 0.90630 0.92058 0.91093 0.88569 0.97431 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.91 37.15 0.37 -1.14 16 2 C -0.13 -1.65 5.93 -26.73 -0.16 -1.80 16 3 C -0.11 -1.28 5.10 -26.73 -0.14 -1.42 16 4 C -0.14 -2.17 4.54 -26.73 -0.12 -2.29 16 5 C 0.16 2.17 3.01 -69.08 -0.21 1.97 16 6 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 7 N -0.73 -8.79 4.66 -59.81 -0.28 -9.06 16 8 C 0.71 10.65 7.59 -86.92 -0.66 9.99 16 9 N -0.87 -8.72 8.88 27.63 0.25 -8.47 16 10 O -0.55 -11.70 13.03 -18.20 -0.24 -11.94 16 11 C 0.50 9.13 6.80 -10.98 -0.07 9.06 16 12 O -0.52 -11.75 13.67 -17.94 -0.25 -12.00 16 13 N -0.70 -12.59 3.34 -60.29 -0.20 -12.79 16 14 C 0.14 2.75 4.57 -4.04 -0.02 2.73 16 15 C 0.12 2.48 3.16 -67.43 -0.21 2.27 16 16 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 17 C 0.06 1.08 6.29 37.31 0.23 1.32 16 18 O -0.40 -8.38 10.74 -35.23 -0.38 -8.76 16 19 C 0.05 1.05 6.98 37.31 0.26 1.31 16 20 C 0.13 3.00 5.96 -3.53 -0.02 2.98 16 21 N -0.59 -13.62 2.98 -164.30 -0.49 -14.11 16 22 C -0.26 -6.63 7.98 -15.06 -0.12 -6.75 16 23 H 0.08 1.93 4.30 -52.49 -0.23 1.70 16 24 C 0.01 0.40 4.97 -17.43 -0.09 0.31 16 25 N -0.89 -24.96 11.46 55.49 0.64 -24.32 16 26 Si 0.89 21.55 29.58 -169.99 -5.03 16.53 16 27 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 29 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.66 7.75 -51.93 -0.40 0.25 16 37 H 0.09 1.87 6.04 -51.93 -0.31 1.55 16 38 H 0.08 1.40 7.57 -51.93 -0.39 1.01 16 39 H 0.39 3.05 8.84 -40.82 -0.36 2.69 16 40 H 0.39 2.35 8.84 -40.82 -0.36 1.99 16 41 H 0.41 3.89 8.93 -40.82 -0.36 3.53 16 42 H 0.40 6.60 7.55 -40.82 -0.31 6.29 16 43 H 0.08 1.85 7.84 -51.93 -0.41 1.44 16 44 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 47 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 48 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 49 H 0.10 2.44 5.95 -51.93 -0.31 2.13 16 50 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 51 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 398.38 15.07 6.00 6.00 Total: -1.00 -35.35 398.38 -9.43 -44.78 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: -8.50 Total: 15.62 kcal Atomic # 6 Polarization: 19.49 SS G_CDS: -0.95 Total: 18.53 kcal Atomic # 7 Polarization: -68.67 SS G_CDS: -0.09 Total: -68.76 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -0.86 Total: -32.70 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.35 -9.43 -44.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570076178.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.771 kcal (2) G-P(sol) polarization free energy of solvation -35.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds