Wall clock time and date at job start Wed Apr 1 2020 01:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47138 * 2 1 4 4 C 1.52999 * 109.46923 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47056 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47090 * 302.71448 * 5 4 3 7 7 N 1.46502 * 109.47016 * 62.71310 * 5 4 3 8 8 C 1.34784 * 119.99650 * 60.00193 * 7 5 4 9 9 N 1.34781 * 119.99689 * 179.97438 * 8 7 5 10 10 O 1.21588 * 120.00296 * 359.97438 * 8 7 5 11 11 C 1.50699 * 109.47219 * 182.71214 * 5 4 3 12 12 O 1.21281 * 120.00174 * 257.11777 * 11 5 4 13 13 N 1.34779 * 119.99787 * 77.11828 * 11 5 4 14 14 C 1.46499 * 119.99987 * 185.69620 * 13 11 5 15 15 C 1.53005 * 109.47327 * 185.12750 * 14 13 11 16 16 H 1.09006 * 109.70376 * 306.22623 * 15 14 13 17 17 C 1.53713 * 109.74774 * 66.99311 * 15 14 13 18 18 O 1.42964 * 109.14565 * 172.16705 * 17 15 14 19 19 C 1.42964 * 114.16726 * 297.29343 * 18 17 15 20 20 C 1.53297 * 109.22380 * 62.58285 * 19 18 17 21 21 N 1.47145 * 109.68278 * 185.69415 * 15 14 13 22 22 C 1.36932 * 120.98266 * 9.75830 * 21 15 14 23 23 H 1.08004 * 120.00298 * 328.30928 * 22 21 15 24 24 C 1.38811 * 120.00105 * 148.30734 * 22 21 15 25 25 N 1.31629 * 120.00068 * 348.02644 * 24 22 21 26 26 Si 1.86802 * 120.00261 * 168.02752 * 24 22 21 27 27 H 1.48501 * 109.47062 * 275.00337 * 26 24 22 28 28 H 1.48502 * 109.47257 * 35.00612 * 26 24 22 29 29 H 1.48497 * 109.47229 * 155.00537 * 26 24 22 30 30 H 1.08994 * 109.47417 * 60.00309 * 1 2 3 31 31 H 1.09001 * 109.47617 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47376 * 300.00038 * 1 2 3 33 33 H 1.09001 * 109.47243 * 239.99595 * 2 1 3 34 34 H 1.09000 * 109.47031 * 119.99593 * 2 1 3 35 35 H 1.08998 * 109.47288 * 60.00199 * 3 2 1 36 36 H 1.09000 * 109.46827 * 299.99717 * 3 2 1 37 37 H 1.09001 * 109.47268 * 59.99710 * 4 3 2 38 38 H 1.09000 * 109.47220 * 299.99577 * 4 3 2 39 39 H 0.96999 * 119.99968 * 239.99957 * 7 5 4 40 40 H 0.96999 * 119.99929 * 359.97438 * 9 8 7 41 41 H 0.96989 * 119.99684 * 179.97438 * 9 8 7 42 42 H 0.96997 * 119.99947 * 5.70287 * 13 11 5 43 43 H 1.08994 * 109.47357 * 65.12249 * 14 13 11 44 44 H 1.09004 * 109.47094 * 305.12048 * 14 13 11 45 45 H 1.09005 * 109.65449 * 52.20337 * 17 15 14 46 46 H 1.08997 * 109.48597 * 292.03017 * 17 15 14 47 47 H 1.08994 * 109.51292 * 302.65529 * 19 18 17 48 48 H 1.08999 * 109.55172 * 182.52661 * 19 18 17 49 49 H 1.09000 * 109.68294 * 187.98092 * 20 19 18 50 50 H 1.08997 * 109.71493 * 67.43683 * 20 19 18 51 51 H 0.96995 * 119.99923 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4424 0.0006 5 6 4.0799 2.8849 0.0000 6 1 3.6778 3.4121 -0.8651 7 7 3.6452 3.5572 1.2270 8 6 4.0245 3.0782 2.4284 9 7 3.6250 3.6969 3.5572 10 8 4.7271 2.0880 2.4939 11 6 5.5855 2.8854 -0.0666 12 8 6.2366 3.1042 0.9329 13 7 6.2083 2.6427 -1.2369 14 6 7.6675 2.5193 -1.2784 15 6 8.1261 2.3743 -2.7309 16 1 7.5919 1.5505 -3.2044 17 6 7.8534 3.6802 -3.4945 18 8 8.4484 3.5978 -4.7918 19 6 9.8718 3.4654 -4.7755 20 6 10.2488 2.1540 -4.0768 21 7 9.5737 2.1138 -2.7698 22 6 10.2711 1.8365 -1.6245 23 1 9.9642 2.2740 -0.6860 24 6 11.3726 0.9929 -1.6696 25 7 11.6093 0.2766 -2.7483 26 14 12.5190 0.8740 -0.1995 27 1 13.5277 1.9616 -0.2692 28 1 11.7329 1.0075 1.0533 29 1 13.2077 -0.4415 -0.2139 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 3.9336 0.9284 -0.8891 38 1 3.9329 0.9288 0.8909 39 1 3.0844 4.3469 1.1747 40 1 3.0648 4.4871 3.5049 41 1 3.8976 3.3520 4.4217 42 1 5.6904 2.5498 -2.0518 43 1 7.9741 1.6406 -0.7111 44 1 8.1199 3.4098 -0.8418 45 1 8.2836 4.5204 -2.9493 46 1 6.7778 3.8244 -3.5957 47 1 10.3094 4.3047 -4.2350 48 1 10.2489 3.4544 -5.7981 49 1 11.3285 2.1114 -3.9337 50 1 9.9253 1.3080 -4.6833 51 1 12.3788 -0.3131 -2.7797 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570076179.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:55 Heat of formation + Delta-G solvation = -127.262924 kcal Electronic energy + Delta-G solvation = -31578.274755 eV Core-core repulsion = 27318.942140 eV Total energy + Delta-G solvation = -4259.332615 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.60701 -40.34925 -39.58971 -37.18373 -36.74561 -35.77007 -35.15063 -34.39031 -33.31144 -32.15529 -31.23008 -28.97561 -28.19046 -26.65931 -25.27668 -23.87262 -23.36096 -22.52472 -21.76037 -21.49259 -20.81338 -19.55261 -18.89735 -18.21915 -17.74079 -17.27170 -17.15338 -16.76258 -16.47343 -16.27304 -16.11104 -15.73146 -15.56575 -15.47697 -15.17471 -15.08871 -14.95917 -14.69856 -14.57318 -14.14585 -13.96837 -13.63315 -13.43302 -13.08705 -12.94092 -12.78396 -12.73279 -12.60259 -12.17376 -12.16093 -12.04596 -11.99723 -11.91274 -11.74320 -11.43593 -11.29762 -11.21965 -10.81190 -10.70629 -10.59490 -10.46098 -10.00172 -9.85908 -8.69527 -7.94410 -5.46409 1.39904 1.41750 1.50188 1.69618 1.86543 2.26530 2.42794 2.54459 2.99611 3.21156 3.50807 3.71077 3.77321 3.89964 3.96736 4.05474 4.12279 4.20122 4.24569 4.30057 4.42891 4.45514 4.53365 4.58364 4.61665 4.69006 4.85760 4.90741 4.95910 5.02282 5.04333 5.06583 5.07272 5.22293 5.26381 5.35493 5.42489 5.47854 5.53755 5.56476 5.57185 5.61879 6.00968 6.12450 6.26254 6.33180 6.65855 7.05687 7.24414 7.39145 7.71202 7.88708 8.24876 9.10409 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.010977 B = 0.002994 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.142165 B = 9349.650490 C =10262.880089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.130 4.130 3 C -0.099 4.099 4 C -0.132 4.132 5 C 0.164 3.836 6 H 0.163 0.837 7 N -0.717 5.717 8 C 0.699 3.301 9 N -0.855 5.855 10 O -0.623 6.623 11 C 0.488 3.512 12 O -0.563 6.563 13 N -0.714 5.714 14 C 0.155 3.845 15 C 0.131 3.869 16 H 0.037 0.963 17 C 0.061 3.939 18 O -0.394 6.394 19 C 0.049 3.951 20 C 0.150 3.850 21 N -0.606 5.606 22 C -0.261 4.261 23 H 0.062 0.938 24 C -0.039 4.039 25 N -0.928 5.928 26 Si 0.959 3.041 27 H -0.278 1.278 28 H -0.282 1.282 29 H -0.289 1.289 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.039 0.961 35 H 0.061 0.939 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.050 0.950 39 H 0.420 0.580 40 H 0.412 0.588 41 H 0.415 0.585 42 H 0.414 0.586 43 H 0.034 0.966 44 H 0.048 0.952 45 H 0.042 0.958 46 H 0.124 0.876 47 H 0.044 0.956 48 H 0.110 0.890 49 H 0.063 0.937 50 H 0.007 0.993 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.370 9.866 2.127 27.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.167 4.167 3 C -0.137 4.137 4 C -0.171 4.171 5 C 0.054 3.946 6 H 0.181 0.819 7 N -0.375 5.375 8 C 0.398 3.602 9 N -0.424 5.424 10 O -0.501 6.501 11 C 0.274 3.726 12 O -0.439 6.439 13 N -0.369 5.369 14 C 0.030 3.970 15 C 0.025 3.975 16 H 0.055 0.945 17 C -0.017 4.017 18 O -0.313 6.313 19 C -0.029 4.029 20 C 0.025 3.975 21 N -0.332 5.332 22 C -0.391 4.391 23 H 0.079 0.921 24 C -0.235 4.235 25 N -0.573 5.573 26 Si 0.787 3.213 27 H -0.204 1.204 28 H -0.207 1.207 29 H -0.215 1.215 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.069 0.931 39 H 0.257 0.743 40 H 0.243 0.757 41 H 0.246 0.754 42 H 0.252 0.748 43 H 0.053 0.947 44 H 0.067 0.933 45 H 0.061 0.939 46 H 0.142 0.858 47 H 0.062 0.938 48 H 0.128 0.872 49 H 0.081 0.919 50 H 0.025 0.975 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -24.297 9.077 2.554 26.062 hybrid contribution 1.098 -0.286 1.238 1.679 sum -23.199 8.792 3.791 25.097 Atomic orbital electron populations 1.21731 0.94674 1.01775 1.02278 1.21539 0.96751 0.97158 1.01281 1.21465 0.92160 0.96868 1.03171 1.21949 0.97891 0.94090 1.03130 1.20836 0.87999 0.96639 0.89165 0.81929 1.44484 1.56337 1.33745 1.02934 1.16231 0.79174 0.82803 0.82030 1.42772 1.58409 1.34400 1.06849 1.90968 1.42685 1.29842 1.86654 1.21837 0.92396 0.75911 0.82460 1.90744 1.68502 1.48541 1.36137 1.45807 1.06847 1.73462 1.10764 1.20851 0.80051 0.99912 0.96233 1.21477 0.86027 0.96632 0.93367 0.94542 1.23161 0.99204 0.95524 0.83827 1.87783 1.20927 1.94247 1.28328 1.23192 0.81017 0.97173 1.01527 1.21263 0.97762 0.93564 0.84958 1.44232 1.02219 1.82884 1.03900 1.19279 1.09541 1.21689 0.88631 0.92061 1.25803 1.02222 0.96004 0.99508 1.70115 1.29505 1.28137 1.29593 0.85428 0.79225 0.76972 0.79691 1.20389 1.20748 1.21546 0.91475 0.92956 0.92769 0.91900 0.94223 0.92021 0.89057 0.90151 0.93124 0.74261 0.75740 0.75362 0.74836 0.94735 0.93342 0.93947 0.85826 0.93774 0.87215 0.91852 0.97518 0.93842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 71.98 0.71 -1.02 16 2 C -0.13 -1.99 5.93 30.59 0.18 -1.81 16 3 C -0.10 -1.33 5.08 30.59 0.16 -1.17 16 4 C -0.13 -2.65 4.53 30.59 0.14 -2.52 16 5 C 0.16 3.05 3.04 44.25 0.13 3.18 16 6 H 0.16 1.26 8.14 -2.39 -0.02 1.24 16 7 N -0.72 -12.29 4.54 -461.39 -2.09 -14.38 16 8 C 0.70 17.86 7.57 179.05 1.36 19.22 16 9 N -0.85 -13.52 8.88 -184.74 -1.64 -15.16 16 10 O -0.62 -24.04 13.14 18.20 0.24 -23.81 16 11 C 0.49 15.08 6.78 87.66 0.59 15.67 16 12 O -0.56 -24.19 13.75 19.16 0.26 -23.93 16 13 N -0.71 -20.55 5.33 -463.06 -2.47 -23.02 16 14 C 0.15 6.19 3.91 86.38 0.34 6.52 16 15 C 0.13 5.30 3.17 45.11 0.14 5.45 16 16 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 17 C 0.06 2.00 6.11 72.22 0.44 2.44 16 18 O -0.39 -14.26 10.74 -148.98 -1.60 -15.86 16 19 C 0.05 1.84 6.98 72.08 0.50 2.34 16 20 C 0.15 7.21 5.38 86.35 0.46 7.68 16 21 N -0.61 -30.59 3.02 -672.93 -2.03 -32.62 16 22 C -0.26 -14.71 8.52 84.03 0.72 -13.99 16 23 H 0.06 3.52 6.41 -2.91 -0.02 3.50 16 24 C -0.04 -2.22 5.03 84.86 0.43 -1.80 16 25 N -0.93 -55.21 11.23 21.65 0.24 -54.96 16 26 Si 0.96 47.12 29.57 68.60 2.03 49.14 16 27 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 28 H -0.28 -13.98 7.11 99.48 0.71 -13.28 16 29 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.06 0.84 7.68 -2.39 -0.02 0.82 16 36 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.05 1.53 6.09 -2.39 -0.01 1.52 16 39 H 0.42 3.29 8.84 -92.71 -0.82 2.47 16 40 H 0.41 2.93 8.84 -92.71 -0.82 2.11 16 41 H 0.41 6.52 8.93 -92.72 -0.83 5.69 16 42 H 0.41 8.30 8.05 -92.71 -0.75 7.55 16 43 H 0.03 1.70 7.21 -2.39 -0.02 1.68 16 44 H 0.05 2.13 7.83 -2.39 -0.02 2.11 16 45 H 0.04 1.45 8.13 -2.38 -0.02 1.43 16 46 H 0.12 2.92 7.69 -2.39 -0.02 2.90 16 47 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 49 H 0.06 3.38 6.39 -2.39 -0.02 3.37 16 50 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 51 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -87.77 401.57 -2.99 -90.77 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: -2.24 Total: 23.63 kcal Atomic # 6 Polarization: 33.89 SS G_CDS: 6.31 Total: 40.20 kcal Atomic # 7 Polarization: -132.15 SS G_CDS: -7.99 Total: -140.14 kcal Atomic # 8 Polarization: -62.50 SS G_CDS: -1.10 Total: -63.59 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.14 kcal Total: -87.77 -2.99 -90.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570076179.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.497 kcal (2) G-P(sol) polarization free energy of solvation -87.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds