Wall clock time and date at job start Wed Apr 1 2020 01:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52995 * 109.47455 * 2 1 4 4 C 1.52998 * 109.47621 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47364 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47227 * 54.99931 * 5 4 3 7 7 N 1.46499 * 109.47006 * 294.99987 * 5 4 3 8 8 C 1.34779 * 119.99984 * 299.99997 * 7 5 4 9 9 N 1.34780 * 120.00055 * 180.02562 * 8 7 5 10 10 O 1.21591 * 119.99970 * 359.97438 * 8 7 5 11 11 C 1.50707 * 109.47254 * 175.00170 * 5 4 3 12 12 O 1.21280 * 120.00005 * 99.99620 * 11 5 4 13 13 N 1.34782 * 119.99854 * 280.00145 * 11 5 4 14 14 C 1.46493 * 119.99783 * 179.97438 * 13 11 5 15 15 C 1.53009 * 109.47007 * 179.97438 * 14 13 11 16 16 H 1.08999 * 109.67553 * 59.86629 * 15 14 13 17 17 C 1.53287 * 109.68042 * 180.38749 * 15 14 13 18 18 O 1.42974 * 109.21639 * 171.98861 * 17 15 14 19 19 C 1.42960 * 114.19943 * 297.47421 * 18 17 15 20 20 C 1.53298 * 109.22286 * 62.56413 * 19 18 17 21 21 N 1.47148 * 109.68001 * 299.35139 * 15 14 13 22 22 C 1.36935 * 120.98431 * 9.76254 * 21 15 14 23 23 H 1.07997 * 120.00109 * 328.22350 * 22 21 15 24 24 C 1.38813 * 119.99961 * 148.22774 * 22 21 15 25 25 N 1.31615 * 120.00515 * 349.27688 * 24 22 21 26 26 Si 1.86810 * 119.99958 * 169.27677 * 24 22 21 27 27 H 1.48497 * 109.46827 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.46772 * 119.99882 * 26 24 22 29 29 H 1.48498 * 109.46964 * 240.00060 * 26 24 22 30 30 H 1.09000 * 109.47246 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47292 * 299.99930 * 1 2 3 32 32 H 1.09001 * 109.47282 * 59.99853 * 1 2 3 33 33 H 1.09001 * 109.47282 * 120.00147 * 2 1 3 34 34 H 1.09001 * 109.47292 * 240.00069 * 2 1 3 35 35 H 1.08998 * 109.47446 * 300.00094 * 3 2 1 36 36 H 1.09003 * 109.47172 * 60.00173 * 3 2 1 37 37 H 1.09001 * 109.47296 * 300.00258 * 4 3 2 38 38 H 1.09001 * 109.47111 * 60.00078 * 4 3 2 39 39 H 0.97001 * 119.99819 * 120.00388 * 7 5 4 40 40 H 0.97001 * 119.99748 * 0.02562 * 9 8 7 41 41 H 0.96997 * 119.99748 * 180.02562 * 9 8 7 42 42 H 0.96999 * 119.99890 * 359.97438 * 13 11 5 43 43 H 1.08998 * 109.47344 * 299.99625 * 14 13 11 44 44 H 1.09001 * 109.47101 * 60.00497 * 14 13 11 45 45 H 1.09004 * 109.51247 * 291.94606 * 17 15 14 46 46 H 1.08999 * 109.51962 * 52.09933 * 17 15 14 47 47 H 1.09003 * 109.51577 * 302.63953 * 19 18 17 48 48 H 1.09003 * 109.55365 * 182.50936 * 19 18 17 49 49 H 1.08999 * 109.68384 * 187.97597 * 20 19 18 50 50 H 1.08994 * 109.71387 * 67.43568 * 20 19 18 51 51 H 0.96998 * 120.00434 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8849 0.0013 6 1 3.6450 3.4238 0.8431 7 7 3.6929 3.5403 -1.2505 8 6 4.1180 3.0451 -2.4298 9 7 3.7623 3.6483 -3.5814 10 8 4.8230 2.0548 -2.4547 11 6 5.5819 2.8867 0.1257 12 8 6.2718 3.0399 -0.8599 13 7 6.1583 2.7179 1.3323 14 6 7.6183 2.7191 1.4532 15 6 8.0089 2.5109 2.9178 16 1 7.6158 1.5574 3.2705 17 6 9.5360 2.5209 3.0512 18 8 9.8873 2.5138 4.4371 19 6 9.4398 3.6624 5.1610 20 6 7.9078 3.7099 5.1355 21 7 7.4635 3.6051 3.7365 22 6 6.5686 4.4993 3.2123 23 1 6.6197 4.7644 2.1666 24 6 5.5958 5.0650 4.0250 25 7 5.3947 4.5931 5.2370 26 14 4.5720 6.4964 3.3984 27 1 4.9911 6.8365 2.0150 28 1 3.1363 6.1170 3.4021 29 1 4.7752 7.6738 4.2802 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 3.9330 0.9287 0.8908 38 1 3.9337 0.9285 -0.8891 39 1 3.1308 4.3305 -1.2305 40 1 3.2008 4.4390 -3.5614 41 1 4.0679 3.2918 -4.4301 42 1 5.6065 2.5957 2.1206 43 1 8.0336 1.9133 0.8479 44 1 8.0109 3.6745 1.1052 45 1 9.9497 1.6371 2.5656 46 1 9.9369 3.4179 2.5792 47 1 9.8398 4.5640 4.6969 48 1 9.7850 3.6005 6.1931 49 1 7.5626 4.6523 5.5607 50 1 7.5045 2.8774 5.7120 51 1 4.7147 4.9882 5.8048 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570076180.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:59 Heat of formation + Delta-G solvation = -93.794875 kcal Electronic energy + Delta-G solvation = -32437.850801 eV Core-core repulsion = 28179.969469 eV Total energy + Delta-G solvation = -4257.881332 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.26911 -38.83258 -38.03525 -36.11216 -35.23208 -34.02072 -33.51627 -33.32376 -31.57436 -30.56508 -30.15947 -27.38958 -26.86405 -24.96445 -23.46236 -22.74055 -21.87682 -21.33318 -20.60776 -19.72813 -19.30133 -18.39944 -17.40433 -16.80262 -16.06775 -15.88332 -15.75964 -15.52487 -14.98774 -14.68473 -14.58038 -14.36031 -14.09472 -14.03650 -13.84229 -13.72241 -13.64757 -13.17358 -12.95844 -12.87903 -12.54012 -12.46495 -11.91573 -11.61992 -11.49886 -11.22308 -11.08794 -11.05301 -10.93905 -10.84126 -10.71589 -10.56662 -10.39925 -10.27031 -10.06279 -9.86467 -9.65150 -9.48889 -9.40430 -9.03664 -8.68837 -8.49092 -8.13972 -6.73335 -5.92956 -3.42731 2.94307 3.19891 3.31490 3.33116 3.38319 3.56232 3.92046 4.30534 4.53840 4.61905 4.82757 4.95715 5.04052 5.15329 5.24013 5.25367 5.36454 5.40386 5.49054 5.64827 5.73767 5.75768 5.78363 5.87816 5.89691 5.92190 6.04064 6.06030 6.14807 6.17543 6.18588 6.27439 6.29792 6.33695 6.45644 6.54248 6.64917 6.79719 6.83293 7.06434 7.06869 7.23641 7.47610 7.69102 7.87372 8.15078 8.26969 8.34753 8.90343 9.02875 9.04760 9.63974 10.24322 11.13584 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.010265 B = 0.003795 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.946184 B = 7376.950151 C = 7896.389929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.113 4.113 4 C -0.132 4.132 5 C 0.153 3.847 6 H 0.109 0.891 7 N -0.731 5.731 8 C 0.711 3.289 9 N -0.875 5.875 10 O -0.564 6.564 11 C 0.496 3.504 12 O -0.530 6.530 13 N -0.698 5.698 14 C 0.140 3.860 15 C 0.126 3.874 16 H 0.041 0.959 17 C 0.056 3.944 18 O -0.393 6.393 19 C 0.035 3.965 20 C 0.144 3.856 21 N -0.591 5.591 22 C -0.250 4.250 23 H 0.074 0.926 24 C 0.008 3.992 25 N -0.899 5.899 26 Si 0.893 3.107 27 H -0.277 1.277 28 H -0.288 1.288 29 H -0.288 1.288 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.396 0.604 40 H 0.391 0.609 41 H 0.410 0.590 42 H 0.412 0.588 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.083 0.917 46 H 0.046 0.954 47 H 0.040 0.960 48 H 0.079 0.921 49 H 0.091 0.909 50 H 0.030 0.970 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.878 -3.107 -9.170 11.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.151 4.151 4 C -0.171 4.171 5 C 0.043 3.957 6 H 0.127 0.873 7 N -0.387 5.387 8 C 0.410 3.590 9 N -0.443 5.443 10 O -0.439 6.439 11 C 0.279 3.721 12 O -0.406 6.406 13 N -0.351 5.351 14 C 0.015 3.985 15 C 0.019 3.981 16 H 0.059 0.941 17 C -0.023 4.023 18 O -0.311 6.311 19 C -0.043 4.043 20 C 0.019 3.981 21 N -0.317 5.317 22 C -0.380 4.380 23 H 0.091 0.909 24 C -0.192 4.192 25 N -0.543 5.543 26 Si 0.723 3.277 27 H -0.202 1.202 28 H -0.214 1.214 29 H -0.215 1.215 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.111 0.889 39 H 0.229 0.771 40 H 0.218 0.782 41 H 0.242 0.758 42 H 0.250 0.750 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.101 0.899 46 H 0.064 0.936 47 H 0.058 0.942 48 H 0.097 0.903 49 H 0.109 0.891 50 H 0.048 0.952 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.784 -3.962 -9.501 11.807 hybrid contribution -1.423 1.819 -0.140 2.314 sum -7.207 -2.142 -9.641 12.226 Atomic orbital electron populations 1.21765 0.96146 1.01313 1.01620 1.21507 0.95500 0.97075 1.02099 1.21553 0.94897 0.96750 1.01865 1.21972 0.95707 0.94745 1.04637 1.20724 0.93064 0.95705 0.86199 0.87316 1.44689 1.56434 1.33222 1.04346 1.15823 0.79527 0.83210 0.80461 1.42979 1.59134 1.34431 1.07765 1.90945 1.39974 1.27105 1.85828 1.20643 0.90243 0.77662 0.83506 1.90693 1.64266 1.48732 1.36879 1.45943 1.07652 1.72242 1.09223 1.21086 0.80886 1.00971 0.95541 1.21428 0.93050 0.92964 0.90702 0.94097 1.22871 0.95640 1.00840 0.82966 1.87798 1.78130 1.44055 1.21141 1.23344 0.98514 0.87383 0.95071 1.21397 0.88347 1.02311 0.86043 1.44097 1.50166 1.29103 1.08329 1.19281 1.06030 1.17064 0.95618 0.90869 1.25159 0.97189 0.99786 0.97020 1.69984 1.34360 1.41355 1.08640 0.86360 0.80056 0.82777 0.78549 1.20195 1.21443 1.21490 0.93015 0.92728 0.93050 0.91880 0.92171 0.92188 0.91930 0.90668 0.88891 0.77053 0.78212 0.75817 0.75000 0.92529 0.91867 0.89895 0.93564 0.94175 0.90269 0.89131 0.95229 0.93524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 37.15 0.37 -1.01 16 2 C -0.12 -1.31 5.93 -26.74 -0.16 -1.47 16 3 C -0.11 -1.28 5.10 -26.73 -0.14 -1.41 16 4 C -0.13 -1.83 4.54 -26.73 -0.12 -1.95 16 5 C 0.15 2.31 3.01 -69.08 -0.21 2.10 16 6 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 7 N -0.73 -9.76 4.66 -59.81 -0.28 -10.04 16 8 C 0.71 10.73 7.59 -86.91 -0.66 10.07 16 9 N -0.87 -8.94 8.88 27.64 0.25 -8.69 16 10 O -0.56 -11.10 13.03 -18.21 -0.24 -11.34 16 11 C 0.50 9.46 6.82 -10.98 -0.07 9.38 16 12 O -0.53 -11.92 13.68 -17.94 -0.25 -12.17 16 13 N -0.70 -13.21 3.78 -60.29 -0.23 -13.44 16 14 C 0.14 2.67 4.45 -4.04 -0.02 2.66 16 15 C 0.13 2.48 3.21 -67.42 -0.22 2.26 16 16 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 17 C 0.06 1.01 6.29 37.31 0.23 1.24 16 18 O -0.39 -7.71 10.74 -35.23 -0.38 -8.08 16 19 C 0.03 0.67 6.99 37.31 0.26 0.93 16 20 C 0.14 3.25 5.37 -3.53 -0.02 3.23 16 21 N -0.59 -13.45 3.03 -164.30 -0.50 -13.95 16 22 C -0.25 -6.04 7.03 -15.06 -0.11 -6.15 16 23 H 0.07 1.82 5.84 -52.49 -0.31 1.51 16 24 C 0.01 0.19 5.06 -17.43 -0.09 0.11 16 25 N -0.90 -23.54 11.18 55.49 0.62 -22.92 16 26 Si 0.89 19.77 29.57 -169.99 -5.03 14.74 16 27 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 29 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.66 7.75 -51.93 -0.40 0.26 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.09 1.52 6.04 -51.93 -0.31 1.21 16 39 H 0.40 4.01 8.84 -40.82 -0.36 3.65 16 40 H 0.39 2.68 8.84 -40.82 -0.36 2.32 16 41 H 0.41 3.80 8.93 -40.82 -0.36 3.44 16 42 H 0.41 7.99 7.32 -40.82 -0.30 7.69 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.06 1.32 7.56 -51.93 -0.39 0.93 16 45 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 49 H 0.09 2.23 6.38 -51.93 -0.33 1.90 16 50 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.25 6.53 8.31 -40.82 -0.34 6.19 16 LS Contribution 399.11 15.07 6.01 6.01 Total: -1.00 -32.64 399.11 -9.56 -42.21 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: -8.61 Total: 17.67 kcal Atomic # 6 Polarization: 20.94 SS G_CDS: -0.94 Total: 19.99 kcal Atomic # 7 Polarization: -68.90 SS G_CDS: -0.14 Total: -69.03 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -0.86 Total: -31.59 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.03 Total: 14.74 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.64 -9.56 -42.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570076180.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.588 kcal (2) G-P(sol) polarization free energy of solvation -32.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds