Wall clock time and date at job start Wed Apr 1 2020 01:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00069 * 2 1 4 4 C 1.53004 * 109.47066 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.47034 * 63.93963 * 4 3 2 6 6 C 1.46901 * 111.00002 * 70.83093 * 5 4 3 7 7 C 1.50700 * 109.47083 * 65.58707 * 6 5 4 8 8 H 1.07996 * 120.00161 * 4.47603 * 7 6 5 9 9 C 1.37885 * 119.99535 * 184.47688 * 7 6 5 10 10 N 1.31509 * 120.00383 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99448 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46834 * 90.00176 * 11 9 7 13 13 H 1.48501 * 109.46851 * 209.99852 * 11 9 7 14 14 H 1.48496 * 109.47221 * 329.99976 * 11 9 7 15 15 C 1.38586 * 111.00006 * 194.77948 * 5 4 3 16 16 N 1.31218 * 126.47348 * 342.41423 * 15 5 4 17 17 N 1.28523 * 109.85958 * 179.97438 * 16 15 5 18 18 C 1.30296 * 110.05591 * 359.97438 * 17 16 15 19 19 C 1.50705 * 126.35070 * 179.97438 * 18 17 16 20 20 C 1.53007 * 109.46882 * 5.02504 * 19 18 17 21 21 C 1.52998 * 109.47324 * 245.02722 * 19 18 17 22 22 O 1.42895 * 109.47104 * 125.02260 * 19 18 17 23 23 N 1.36452 * 126.47217 * 162.71728 * 15 5 4 24 24 C 1.46501 * 127.13700 * 0.02562 * 23 15 5 25 25 C 1.53005 * 109.47251 * 275.16502 * 24 23 15 26 26 O 1.42895 * 109.47317 * 180.02562 * 25 24 23 27 27 C 1.42900 * 114.00074 * 180.02562 * 26 25 24 28 28 H 1.08998 * 109.47303 * 300.00397 * 1 2 3 29 29 H 1.09006 * 109.47014 * 60.00006 * 1 2 3 30 30 H 1.08997 * 109.47300 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47127 * 59.99878 * 3 2 1 32 32 H 1.08993 * 109.47317 * 299.99625 * 3 2 1 33 33 H 1.08998 * 109.47045 * 303.94143 * 4 3 2 34 34 H 1.09003 * 109.47241 * 183.94189 * 4 3 2 35 35 H 1.08996 * 109.47033 * 185.58818 * 6 5 4 36 36 H 1.09002 * 109.47092 * 305.58217 * 6 5 4 37 37 H 0.97001 * 119.99907 * 179.97438 * 10 9 7 38 38 H 1.08999 * 109.47061 * 179.97438 * 20 19 18 39 39 H 1.08993 * 109.47074 * 300.00196 * 20 19 18 40 40 H 1.08998 * 109.46796 * 59.99857 * 20 19 18 41 41 H 1.08996 * 109.46686 * 299.99887 * 21 19 18 42 42 H 1.09007 * 109.47128 * 59.99559 * 21 19 18 43 43 H 1.08999 * 109.47217 * 179.97438 * 21 19 18 44 44 H 0.96696 * 114.00386 * 300.00477 * 22 19 18 45 45 H 1.08992 * 109.47258 * 35.16761 * 24 23 15 46 46 H 1.09001 * 109.47188 * 155.16803 * 24 23 15 47 47 H 1.09000 * 109.46977 * 300.00180 * 25 24 23 48 48 H 1.09001 * 109.46779 * 60.00050 * 25 24 23 49 49 H 1.08998 * 109.46994 * 299.99494 * 27 26 25 50 50 H 1.08995 * 109.47429 * 59.99434 * 27 26 25 51 51 H 1.08999 * 109.46914 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9760 0.5392 -1.2432 6 6 3.7976 1.4356 -2.3933 7 6 4.7134 2.6239 -2.2507 8 1 5.4142 2.6702 -1.4303 9 6 4.6564 3.6520 -3.1677 10 7 3.8034 3.5954 -4.1670 11 14 5.7911 5.1253 -2.9906 12 1 7.0541 4.8690 -3.7285 13 1 5.1276 6.3310 -3.5487 14 1 6.0935 5.3473 -1.5538 15 6 5.2916 0.1149 -1.1437 16 7 6.1747 0.5132 -0.2587 17 7 7.2940 -0.0860 -0.4585 18 6 7.1921 -0.8959 -1.4742 19 6 8.2823 -1.7778 -2.0263 20 6 9.5200 -1.6790 -1.1322 21 6 8.6388 -1.3219 -3.4427 22 8 7.8274 -3.1319 -2.0620 23 7 5.9148 -0.7915 -1.9510 24 6 5.3346 -1.5077 -3.0897 25 6 4.6098 -2.7590 -2.5897 26 8 4.0444 -3.4578 -3.7005 27 6 3.3406 -4.6484 -3.3409 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6887 1.8464 -0.8899 33 1 3.8520 0.5841 0.8534 34 1 3.9786 2.1780 0.0713 35 1 4.0375 0.9002 -3.3119 36 1 2.7630 1.7766 -2.4311 37 1 3.7631 4.3189 -4.8119 38 1 10.3084 -2.3172 -1.5313 39 1 9.8670 -0.6461 -1.1049 40 1 9.2661 -2.0037 -0.1232 41 1 7.7571 -1.3923 -4.0796 42 1 8.9858 -0.2890 -3.4154 43 1 9.4276 -1.9595 -3.8418 44 1 7.5833 -3.4878 -1.1967 45 1 4.6261 -0.8587 -3.6043 46 1 6.1277 -1.7982 -3.7787 47 1 5.3184 -3.4080 -2.0752 48 1 3.8167 -2.4685 -1.9008 49 1 4.0225 -5.3366 -2.8414 50 1 2.5209 -4.3968 -2.6681 51 1 2.9415 -5.1197 -4.2391 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649139398.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:36:47 Heat of formation + Delta-G solvation = -47.296538 kcal Electronic energy + Delta-G solvation = -32999.463381 eV Core-core repulsion = 28743.598369 eV Total energy + Delta-G solvation = -4255.865012 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.44688 -38.21582 -37.93145 -37.66163 -36.32202 -34.61039 -32.72788 -32.42803 -29.82063 -29.45036 -28.55646 -27.38339 -26.57204 -26.25386 -25.71791 -23.77943 -23.00988 -22.44228 -21.58084 -19.99160 -19.55482 -17.64252 -16.89673 -16.57908 -16.14823 -16.06014 -15.87545 -15.74771 -15.40694 -14.98978 -14.92622 -14.74605 -14.45186 -14.37171 -14.23319 -13.51401 -13.32221 -12.86616 -12.61232 -12.37259 -12.22337 -12.19852 -12.11801 -11.88653 -11.70076 -11.51055 -11.36506 -11.27380 -11.26544 -11.08461 -11.00837 -10.91958 -10.61975 -10.50455 -10.26100 -10.23260 -10.01482 -9.70998 -9.60655 -9.50292 -9.25248 -8.80558 -8.56684 -7.46764 -6.18655 -4.26789 2.31369 2.66297 3.23341 3.30193 3.36835 3.46196 3.89016 4.12548 4.20172 4.33488 4.41947 4.65695 4.89478 4.90285 5.02629 5.08135 5.14828 5.30457 5.38321 5.41197 5.43605 5.55287 5.60799 5.61447 5.65958 5.69602 5.74141 5.75094 5.80201 5.81494 5.84087 5.89411 5.91643 6.00779 6.06203 6.20223 6.25846 6.40560 6.58495 6.67311 6.92267 7.09674 7.23062 7.25374 7.44497 7.49047 7.65086 7.77150 7.97735 8.12527 8.83209 9.39116 9.42323 10.87584 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.007398 B = 0.005510 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3784.108902 B = 5080.109902 C = 7002.007669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.381 6.381 3 C 0.067 3.933 4 C 0.081 3.919 5 N -0.459 5.459 6 C 0.190 3.810 7 C -0.557 4.557 8 H 0.071 0.929 9 C 0.071 3.929 10 N -0.889 5.889 11 Si 0.892 3.108 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.271 1.271 15 C 0.419 3.581 16 N -0.334 5.334 17 N -0.272 5.272 18 C 0.115 3.885 19 C 0.226 3.774 20 C -0.159 4.159 21 C -0.142 4.142 22 O -0.553 6.553 23 N -0.459 5.459 24 C 0.116 3.884 25 C 0.057 3.943 26 O -0.387 6.387 27 C 0.036 3.964 28 H 0.033 0.967 29 H 0.039 0.961 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.031 0.969 36 H 0.053 0.947 37 H 0.264 0.736 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.377 0.623 45 H 0.106 0.894 46 H 0.100 0.900 47 H 0.054 0.946 48 H 0.062 0.938 49 H 0.039 0.961 50 H 0.042 0.958 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.612 -13.745 3.631 14.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C -0.010 4.010 4 C -0.047 4.047 5 N -0.183 5.183 6 C 0.067 3.933 7 C -0.596 4.596 8 H 0.089 0.911 9 C -0.133 4.133 10 N -0.527 5.527 11 Si 0.719 3.281 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.195 1.195 15 C 0.063 3.937 16 N -0.179 5.179 17 N -0.113 5.113 18 C -0.153 4.153 19 C 0.183 3.817 20 C -0.217 4.217 21 C -0.199 4.199 22 O -0.357 6.357 23 N -0.155 5.155 24 C -0.007 4.007 25 C -0.021 4.021 26 O -0.305 6.305 27 C -0.060 4.060 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.049 0.951 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.092 0.908 44 H 0.225 0.775 45 H 0.124 0.876 46 H 0.118 0.882 47 H 0.073 0.927 48 H 0.080 0.920 49 H 0.058 0.942 50 H 0.061 0.939 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.043 -13.351 3.699 13.893 hybrid contribution -0.142 1.024 -0.244 1.062 sum 0.901 -12.327 3.456 12.834 Atomic orbital electron populations 1.22650 0.82402 1.01881 0.99525 1.87955 1.18377 1.28293 1.95297 1.22663 0.93531 0.84404 1.00384 1.21908 0.92434 1.00169 0.90159 1.59299 1.09694 1.41549 1.07776 1.20015 0.98704 0.88984 0.85618 1.21817 1.21040 1.04339 1.12367 0.91139 1.24904 0.95282 0.98245 0.94861 1.69932 1.35596 1.33220 1.13928 0.86579 0.80804 0.81945 0.78767 1.20622 1.21062 1.19519 1.22611 0.91718 0.90047 0.89303 1.74655 0.95907 1.22083 1.25288 1.73805 1.17173 1.07012 1.13337 1.25115 0.86547 1.05612 0.98017 1.19299 0.87711 0.78742 0.95982 1.22238 0.96186 1.03818 0.99482 1.21891 1.02598 1.02051 0.93390 1.86575 1.87338 1.26255 1.35547 1.45711 1.10589 1.33023 1.26128 1.21585 0.99565 0.93203 0.86365 1.22696 0.97242 0.92928 0.89195 1.87792 1.72075 1.38632 1.31954 1.22710 0.95454 0.86535 1.01349 0.94827 0.94262 0.90406 0.93246 0.92040 0.90935 0.89981 0.95103 0.92938 0.92606 0.91418 0.90465 0.91645 0.91583 0.90349 0.90817 0.77509 0.87589 0.88153 0.92735 0.91953 0.94211 0.93914 0.89612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.38 -6.50 10.63 -35.23 -0.37 -6.87 16 3 C 0.07 1.16 6.06 37.16 0.23 1.38 16 4 C 0.08 1.60 4.69 -3.82 -0.02 1.58 16 5 N -0.46 -9.80 4.64 -175.88 -0.82 -10.61 16 6 C 0.19 4.63 4.93 -4.98 -0.02 4.60 16 7 C -0.56 -14.90 7.54 -34.44 -0.26 -15.16 16 8 H 0.07 1.98 6.39 -52.49 -0.34 1.64 16 9 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 10 N -0.89 -24.99 13.29 55.43 0.74 -24.25 16 11 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 15 C 0.42 9.00 5.73 -318.87 -1.83 7.17 16 16 N -0.33 -7.54 10.89 30.32 0.33 -7.21 16 17 N -0.27 -5.60 11.51 32.99 0.38 -5.22 16 18 C 0.12 2.04 6.61 -154.01 -1.02 1.02 16 19 C 0.23 3.07 1.03 -91.77 -0.09 2.97 16 20 C -0.16 -1.88 8.32 37.16 0.31 -1.57 16 21 C -0.14 -1.85 8.74 37.16 0.32 -1.52 16 22 O -0.55 -6.70 11.87 -35.23 -0.42 -7.12 16 23 N -0.46 -8.62 2.81 -114.08 -0.32 -8.94 16 24 C 0.12 1.95 6.11 -4.04 -0.02 1.93 16 25 C 0.06 0.85 6.26 37.16 0.23 1.08 16 26 O -0.39 -5.63 10.70 -35.23 -0.38 -6.01 16 27 C 0.04 0.39 11.01 101.05 1.11 1.50 16 28 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 1.14 6.48 -51.93 -0.34 0.81 16 33 H 0.07 1.41 7.85 -51.93 -0.41 1.00 16 34 H 0.08 1.76 6.69 -51.93 -0.35 1.42 16 35 H 0.03 0.80 6.20 -51.93 -0.32 0.48 16 36 H 0.05 1.34 6.39 -51.93 -0.33 1.00 16 37 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.91 5.63 -51.93 -0.29 0.62 16 42 H 0.08 1.07 8.14 -51.92 -0.42 0.64 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.38 3.64 9.04 45.56 0.41 4.05 16 45 H 0.11 2.00 6.15 -51.93 -0.32 1.68 16 46 H 0.10 1.56 5.36 -51.93 -0.28 1.28 16 47 H 0.05 0.74 7.31 -51.93 -0.38 0.36 16 48 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 408.34 15.07 6.15 6.15 Total: -1.00 -31.85 408.34 -7.34 -39.19 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -7.57 Total: 5.99 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -0.05 Total: 8.35 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: 0.31 Total: -56.23 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -1.17 Total: -20.00 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.85 -7.34 -39.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649139398.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.107 kcal (2) G-P(sol) polarization free energy of solvation -31.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds