Wall clock time and date at job start Wed Apr 1 2020 02:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47263 * 2 1 4 4 N 1.46499 * 109.47053 * 179.97438 * 3 2 1 5 5 C 1.36942 * 120.00125 * 95.79772 * 4 3 2 6 6 H 1.07995 * 120.00398 * 170.25936 * 5 4 3 7 7 C 1.38811 * 119.99804 * 350.25779 * 5 4 3 8 8 N 1.31621 * 120.00147 * 332.86468 * 7 5 4 9 9 Si 1.86801 * 120.00176 * 152.86703 * 7 5 4 10 10 H 1.48499 * 109.46955 * 265.31173 * 9 7 5 11 11 H 1.48499 * 109.47101 * 25.31351 * 9 7 5 12 12 H 1.48497 * 109.47085 * 145.31302 * 9 7 5 13 13 C 1.46498 * 120.00243 * 275.79474 * 4 3 2 14 14 C 1.53001 * 109.47461 * 270.00257 * 13 4 3 15 15 N 1.46499 * 109.47078 * 179.97438 * 14 13 4 16 16 C 1.34770 * 119.99637 * 179.97438 * 15 14 13 17 17 O 1.21284 * 120.00607 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99833 * 179.97438 * 16 15 14 19 19 H 1.08996 * 115.56325 * 334.06445 * 18 16 15 20 20 C 1.53129 * 117.51524 * 188.31866 * 18 16 15 21 21 C 1.52369 * 59.85206 * 252.55720 * 20 18 16 22 22 C 1.53781 * 121.20535 * 110.50565 * 21 20 18 23 23 C 1.54479 * 102.20344 * 170.01900 * 22 21 20 24 24 C 1.51419 * 105.23229 * 334.24368 * 23 22 21 25 25 C 1.38460 * 130.36993 * 196.83919 * 24 23 22 26 26 C 1.38097 * 120.27027 * 180.11727 * 25 24 23 27 27 C 1.38253 * 119.91176 * 0.02562 * 26 25 24 28 28 C 1.38087 * 119.93789 * 0.02562 * 27 26 25 29 29 C 1.38387 * 109.79369 * 16.91758 * 24 23 22 30 30 H 1.08998 * 109.47348 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46938 * 300.00555 * 1 2 3 32 32 H 1.09003 * 109.46930 * 60.00153 * 1 2 3 33 33 H 1.08997 * 109.47082 * 239.99935 * 2 1 3 34 34 H 1.09003 * 109.46930 * 119.99847 * 2 1 3 35 35 H 1.08997 * 109.47125 * 59.99960 * 3 2 1 36 36 H 1.09003 * 109.47022 * 299.99791 * 3 2 1 37 37 H 0.96998 * 120.00196 * 179.97438 * 8 7 5 38 38 H 1.09004 * 109.46826 * 30.00285 * 13 4 3 39 39 H 1.08997 * 109.47026 * 149.99730 * 13 4 3 40 40 H 1.08998 * 109.46736 * 299.99712 * 14 13 4 41 41 H 1.08996 * 109.46723 * 59.99490 * 14 13 4 42 42 H 0.96994 * 119.99998 * 359.97438 * 15 14 13 43 43 H 1.09002 * 117.51742 * 0.02562 * 20 18 16 44 44 H 1.09004 * 117.51486 * 145.07262 * 20 18 16 45 45 H 1.09006 * 110.85939 * 288.19874 * 22 21 20 46 46 H 1.09004 * 110.85721 * 51.83928 * 22 21 20 47 47 H 1.09002 * 110.28765 * 215.30698 * 23 22 21 48 48 H 1.08993 * 110.29020 * 93.18478 * 23 22 21 49 49 H 1.08000 * 119.86475 * 0.13869 * 25 24 23 50 50 H 1.07997 * 120.04451 * 180.02562 * 26 25 24 51 51 H 1.07999 * 120.02984 * 179.97438 * 27 26 25 52 52 H 1.07999 * 119.85682 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1902 1.5620 -1.1790 6 1 5.2585 1.7201 -1.1693 7 6 3.5117 1.4800 -2.3872 8 7 2.3938 0.7901 -2.4686 9 14 4.1851 2.3489 -3.8975 10 1 3.5459 3.6829 -4.0272 11 1 5.6542 2.5152 -3.7590 12 1 3.8905 1.5391 -5.1069 13 6 4.2370 1.3145 1.2631 14 6 4.4918 2.7051 1.8482 15 7 5.2233 2.5770 3.1110 16 6 5.5603 3.6794 3.8092 17 8 5.2577 4.7774 3.3924 18 6 6.3123 3.5476 5.1086 19 1 6.1737 2.6055 5.6388 20 6 6.4959 4.8131 5.9511 21 6 7.6797 4.2143 5.2016 22 6 8.2993 4.9294 3.9893 23 6 9.5834 4.1059 3.7457 24 6 9.9288 3.5005 5.0899 25 6 11.1103 2.9391 5.5438 26 6 11.1953 2.4398 6.8285 27 6 10.0967 2.4998 7.6656 28 6 8.9168 3.0582 7.2152 29 6 8.8292 3.5618 5.9279 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 1.9194 0.7331 -3.3128 38 1 3.6476 0.7266 1.9669 39 1 5.1894 0.8163 1.0820 40 1 5.0812 3.2928 1.1445 41 1 3.5394 3.2031 2.0292 42 1 5.4650 1.6989 3.4446 43 1 6.0724 5.7406 5.5656 44 1 6.4780 4.7031 7.0354 45 1 7.6352 4.8770 3.1265 46 1 8.5419 5.9642 4.2314 47 1 10.3900 4.7553 3.4052 48 1 9.3954 3.3200 3.0143 49 1 11.9690 2.8917 4.8905 50 1 12.1188 2.0031 7.1789 51 1 10.1610 2.1096 8.6706 52 1 8.0592 3.1040 7.8701 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663688275.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:04 Heat of formation + Delta-G solvation = 31.605155 kcal Electronic energy + Delta-G solvation = -29409.460170 eV Core-core repulsion = 25567.865854 eV Total energy + Delta-G solvation = -3841.594315 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.98306 -39.32177 -37.06643 -36.37129 -34.45286 -33.99752 -31.96391 -31.40879 -30.89842 -29.08864 -28.14512 -25.51528 -25.38575 -24.33531 -22.94451 -22.60594 -21.25128 -21.18717 -20.35061 -19.84288 -19.23739 -17.06434 -16.79667 -16.60331 -15.66922 -15.47888 -15.42230 -15.17441 -14.85179 -14.65425 -14.25245 -13.86120 -13.74402 -13.64097 -13.36305 -12.94667 -12.86564 -12.75717 -12.43692 -12.36115 -12.24826 -11.95946 -11.78834 -11.65948 -11.31263 -11.24654 -11.03399 -10.93433 -10.77105 -10.68906 -10.58602 -10.49561 -10.39336 -10.10768 -10.00001 -9.80973 -9.66146 -9.18872 -9.04003 -8.73193 -8.59885 -8.36786 -6.92305 -5.79667 -3.10688 1.02746 1.13731 2.59763 3.29305 3.40738 3.44760 3.48779 3.50020 3.87474 4.18393 4.22748 4.45191 4.51564 4.63639 4.72310 4.76881 4.83289 5.00731 5.08980 5.22438 5.27199 5.28399 5.35187 5.45699 5.52863 5.55847 5.66296 5.78102 5.80330 5.83335 5.85881 5.92219 5.95751 6.00991 6.17426 6.21347 6.23170 6.25185 6.25743 6.43821 6.51817 6.58758 6.63208 6.71029 6.73608 6.84950 6.94148 7.13421 7.25902 7.65123 7.75137 7.75584 8.11728 8.31411 8.44445 9.21500 9.83144 10.27982 11.23669 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013993 B = 0.002308 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.573890 B =12130.253452 C =12904.486317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 C 0.174 3.826 4 N -0.593 5.593 5 C -0.257 4.257 6 H 0.073 0.927 7 C 0.003 3.997 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.289 1.289 11 H -0.281 1.281 12 H -0.294 1.294 13 C 0.144 3.856 14 C 0.096 3.904 15 N -0.719 5.719 16 C 0.539 3.461 17 O -0.541 6.541 18 C -0.169 4.169 19 H 0.121 0.879 20 C -0.130 4.130 21 C -0.060 4.060 22 C -0.088 4.088 23 C -0.083 4.083 24 C -0.085 4.085 25 C -0.110 4.110 26 C -0.118 4.118 27 C -0.123 4.123 28 C -0.103 4.103 29 C -0.061 4.061 30 H 0.033 0.967 31 H 0.030 0.970 32 H 0.050 0.950 33 H 0.105 0.895 34 H 0.016 0.984 35 H 0.004 0.996 36 H 0.082 0.918 37 H 0.252 0.748 38 H 0.041 0.959 39 H 0.050 0.950 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.397 0.603 43 H 0.114 0.886 44 H 0.103 0.897 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.084 0.916 49 H 0.120 0.880 50 H 0.123 0.877 51 H 0.123 0.877 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.730 2.808 19.867 23.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C 0.049 3.951 4 N -0.313 5.313 5 C -0.385 4.385 6 H 0.091 0.909 7 C -0.195 4.195 8 N -0.533 5.533 9 Si 0.722 3.278 10 H -0.216 1.216 11 H -0.206 1.206 12 H -0.221 1.221 13 C 0.015 3.985 14 C -0.030 4.030 15 N -0.369 5.369 16 C 0.325 3.675 17 O -0.419 6.419 18 C -0.190 4.190 19 H 0.139 0.861 20 C -0.167 4.167 21 C -0.061 4.061 22 C -0.126 4.126 23 C -0.120 4.120 24 C -0.085 4.085 25 C -0.128 4.128 26 C -0.136 4.136 27 C -0.141 4.141 28 C -0.121 4.121 29 C -0.061 4.061 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.123 0.877 34 H 0.035 0.965 35 H 0.022 0.978 36 H 0.100 0.900 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.230 0.770 43 H 0.132 0.868 44 H 0.121 0.879 45 H 0.105 0.895 46 H 0.099 0.901 47 H 0.096 0.904 48 H 0.102 0.898 49 H 0.138 0.862 50 H 0.141 0.859 51 H 0.141 0.859 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.389 3.548 19.347 23.246 hybrid contribution 0.351 -0.213 -0.545 0.682 sum 12.739 3.335 18.802 22.955 Atomic orbital electron populations 1.21626 0.98554 0.99303 1.00025 1.22156 0.92817 1.00506 1.01547 1.20766 0.81724 0.94487 0.98086 1.44034 1.01773 1.84585 1.00934 1.19237 0.92631 1.43358 0.83321 0.90869 1.24691 0.97813 0.99739 0.97228 1.70151 1.19321 1.38918 1.24959 0.86423 0.78481 0.80089 0.82818 1.21589 1.20610 1.22058 1.20791 0.96520 0.92175 0.88989 1.22407 0.95648 1.02084 0.82856 1.46024 1.57937 1.08559 1.24393 1.19461 0.79053 0.84598 0.84434 1.90696 1.54903 1.26237 1.70048 1.22366 0.98869 0.99785 0.97998 0.86090 1.22963 0.99104 0.96692 0.97950 1.20234 0.86589 1.00779 0.98471 1.21885 0.95815 0.98521 0.96337 1.21112 0.97777 0.99178 0.93949 1.20631 0.93536 0.98076 0.96225 1.20632 0.96960 0.99090 0.96081 1.21051 0.98712 0.99984 0.93884 1.21004 0.93030 1.00229 0.99836 1.20604 0.98121 0.98655 0.94745 1.19685 0.94033 0.98782 0.93644 0.94772 0.95089 0.93039 0.87723 0.96489 0.97771 0.90023 0.93756 0.94053 0.93151 0.91469 0.92220 0.76984 0.86813 0.87871 0.89468 0.90117 0.90400 0.89783 0.86155 0.85908 0.85894 0.86319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.91 37.16 0.37 -2.23 16 2 C -0.13 -2.89 5.77 -26.73 -0.15 -3.05 16 3 C 0.17 4.09 4.88 -4.04 -0.02 4.07 16 4 N -0.59 -14.13 2.53 -173.24 -0.44 -14.57 16 5 C -0.26 -6.77 9.67 -15.06 -0.15 -6.91 16 6 H 0.07 1.92 7.96 -52.49 -0.42 1.50 16 7 C 0.00 0.09 4.81 -17.43 -0.08 0.00 16 8 N -0.89 -24.13 8.67 55.49 0.48 -23.65 16 9 Si 0.89 21.38 29.63 -169.99 -5.04 16.34 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 C 0.14 2.77 5.80 -4.04 -0.02 2.75 16 14 C 0.10 1.73 6.00 -4.04 -0.02 1.71 16 15 N -0.72 -10.39 5.56 -60.30 -0.33 -10.72 16 16 C 0.54 8.02 6.55 -10.99 -0.07 7.95 16 17 O -0.54 -10.05 15.41 5.55 0.09 -9.96 16 18 C -0.17 -1.90 6.06 -92.01 -0.56 -2.46 16 19 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 20 C -0.13 -1.33 9.74 -26.99 -0.26 -1.60 16 21 C -0.06 -0.65 2.34 -155.82 -0.36 -1.02 16 22 C -0.09 -1.00 6.62 -25.55 -0.17 -1.17 16 23 C -0.08 -0.84 6.77 -26.75 -0.18 -1.02 16 24 C -0.08 -0.88 6.14 -104.13 -0.64 -1.52 16 25 C -0.11 -0.99 10.03 -39.55 -0.40 -1.39 16 26 C -0.12 -0.96 10.05 -39.63 -0.40 -1.36 16 27 C -0.12 -0.99 10.05 -39.63 -0.40 -1.39 16 28 C -0.10 -0.93 9.98 -39.54 -0.39 -1.32 16 29 C -0.06 -0.64 5.92 -104.41 -0.62 -1.26 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.10 2.67 6.11 -51.93 -0.32 2.35 16 34 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.00 0.09 8.11 -51.93 -0.42 -0.33 16 36 H 0.08 2.14 6.05 -51.93 -0.31 1.83 16 37 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 38 H 0.04 0.74 8.07 -51.93 -0.42 0.32 16 39 H 0.05 0.95 8.04 -51.93 -0.42 0.53 16 40 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.40 4.62 8.47 -40.82 -0.35 4.27 16 43 H 0.11 1.31 7.70 -51.93 -0.40 0.91 16 44 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.09 1.19 6.29 -51.93 -0.33 0.86 16 46 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 49 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 50 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 51 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 52 H 0.12 0.86 8.05 -52.49 -0.42 0.44 16 LS Contribution 417.12 15.07 6.29 6.29 Total: -1.00 -29.91 417.12 -12.35 -42.26 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -8.86 Total: 5.23 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -4.54 Total: -11.22 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: -0.29 Total: -48.94 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.04 Total: 16.34 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -29.91 -12.35 -42.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663688275.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.868 kcal (2) G-P(sol) polarization free energy of solvation -29.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds