Wall clock time and date at job start Wed Apr 1 2020 02:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47263 * 2 1 4 4 N 1.46499 * 109.47053 * 179.97438 * 3 2 1 5 5 C 1.36942 * 120.00125 * 95.79772 * 4 3 2 6 6 H 1.07995 * 120.00398 * 170.25936 * 5 4 3 7 7 C 1.38811 * 119.99804 * 350.25779 * 5 4 3 8 8 N 1.31621 * 120.00147 * 332.86468 * 7 5 4 9 9 Si 1.86801 * 120.00176 * 152.86703 * 7 5 4 10 10 H 1.48499 * 109.46955 * 265.31173 * 9 7 5 11 11 H 1.48499 * 109.47101 * 25.31351 * 9 7 5 12 12 H 1.48497 * 109.47085 * 145.31302 * 9 7 5 13 13 C 1.46498 * 120.00243 * 275.79474 * 4 3 2 14 14 C 1.53001 * 109.47461 * 270.00257 * 13 4 3 15 15 N 1.46499 * 109.47078 * 179.97438 * 14 13 4 16 16 C 1.34770 * 119.99637 * 179.97438 * 15 14 13 17 17 O 1.21284 * 120.00607 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99833 * 179.97438 * 16 15 14 19 19 H 1.08996 * 115.56325 * 334.06445 * 18 16 15 20 20 C 1.53129 * 117.51524 * 188.31866 * 18 16 15 21 21 C 1.52369 * 59.85206 * 252.55720 * 20 18 16 22 22 C 1.53781 * 121.20535 * 110.50565 * 21 20 18 23 23 C 1.54479 * 102.20344 * 170.01900 * 22 21 20 24 24 C 1.51419 * 105.23229 * 334.24368 * 23 22 21 25 25 C 1.38460 * 130.36993 * 196.83919 * 24 23 22 26 26 C 1.38097 * 120.27027 * 180.11727 * 25 24 23 27 27 C 1.38253 * 119.91176 * 0.02562 * 26 25 24 28 28 C 1.38087 * 119.93789 * 0.02562 * 27 26 25 29 29 C 1.38387 * 109.79369 * 16.91758 * 24 23 22 30 30 H 1.08998 * 109.47348 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46938 * 300.00555 * 1 2 3 32 32 H 1.09003 * 109.46930 * 60.00153 * 1 2 3 33 33 H 1.08997 * 109.47082 * 239.99935 * 2 1 3 34 34 H 1.09003 * 109.46930 * 119.99847 * 2 1 3 35 35 H 1.08997 * 109.47125 * 59.99960 * 3 2 1 36 36 H 1.09003 * 109.47022 * 299.99791 * 3 2 1 37 37 H 0.96998 * 120.00196 * 179.97438 * 8 7 5 38 38 H 1.09004 * 109.46826 * 30.00285 * 13 4 3 39 39 H 1.08997 * 109.47026 * 149.99730 * 13 4 3 40 40 H 1.08998 * 109.46736 * 299.99712 * 14 13 4 41 41 H 1.08996 * 109.46723 * 59.99490 * 14 13 4 42 42 H 0.96994 * 119.99998 * 359.97438 * 15 14 13 43 43 H 1.09002 * 117.51742 * 0.02562 * 20 18 16 44 44 H 1.09004 * 117.51486 * 145.07262 * 20 18 16 45 45 H 1.09006 * 110.85939 * 288.19874 * 22 21 20 46 46 H 1.09004 * 110.85721 * 51.83928 * 22 21 20 47 47 H 1.09002 * 110.28765 * 215.30698 * 23 22 21 48 48 H 1.08993 * 110.29020 * 93.18478 * 23 22 21 49 49 H 1.08000 * 119.86475 * 0.13869 * 25 24 23 50 50 H 1.07997 * 120.04451 * 180.02562 * 26 25 24 51 51 H 1.07999 * 120.02984 * 179.97438 * 27 26 25 52 52 H 1.07999 * 119.85682 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1902 1.5620 -1.1790 6 1 5.2585 1.7201 -1.1693 7 6 3.5117 1.4800 -2.3872 8 7 2.3938 0.7901 -2.4686 9 14 4.1851 2.3489 -3.8975 10 1 3.5459 3.6829 -4.0272 11 1 5.6542 2.5152 -3.7590 12 1 3.8905 1.5391 -5.1069 13 6 4.2370 1.3145 1.2631 14 6 4.4918 2.7051 1.8482 15 7 5.2233 2.5770 3.1110 16 6 5.5603 3.6794 3.8092 17 8 5.2577 4.7774 3.3924 18 6 6.3123 3.5476 5.1086 19 1 6.1737 2.6055 5.6388 20 6 6.4959 4.8131 5.9511 21 6 7.6797 4.2143 5.2016 22 6 8.2993 4.9294 3.9893 23 6 9.5834 4.1059 3.7457 24 6 9.9288 3.5005 5.0899 25 6 11.1103 2.9391 5.5438 26 6 11.1953 2.4398 6.8285 27 6 10.0967 2.4998 7.6656 28 6 8.9168 3.0582 7.2152 29 6 8.8292 3.5618 5.9279 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 1.9194 0.7331 -3.3128 38 1 3.6476 0.7266 1.9669 39 1 5.1894 0.8163 1.0820 40 1 5.0812 3.2928 1.1445 41 1 3.5394 3.2031 2.0292 42 1 5.4650 1.6989 3.4446 43 1 6.0724 5.7406 5.5656 44 1 6.4780 4.7031 7.0354 45 1 7.6352 4.8770 3.1265 46 1 8.5419 5.9642 4.2314 47 1 10.3900 4.7553 3.4052 48 1 9.3954 3.3200 3.0143 49 1 11.9690 2.8917 4.8905 50 1 12.1188 2.0031 7.1789 51 1 10.1610 2.1096 8.6706 52 1 8.0592 3.1040 7.8701 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663688275.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:03 Heat of formation + Delta-G solvation = 17.815753 kcal Electronic energy + Delta-G solvation = -29410.058123 eV Core-core repulsion = 25567.865854 eV Total energy + Delta-G solvation = -3842.192268 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.85064 -40.37854 -38.41523 -37.65582 -35.90738 -34.79860 -33.73668 -33.20579 -31.58135 -29.81958 -29.72857 -27.36625 -26.39850 -25.51194 -24.05168 -23.62678 -22.82973 -21.95357 -21.64125 -21.28268 -20.29152 -18.68828 -18.01156 -17.60791 -17.09832 -16.60465 -16.38025 -16.26650 -15.98450 -15.84019 -15.57327 -15.31916 -15.16782 -14.79784 -14.59802 -14.35464 -14.05619 -14.00318 -13.55992 -13.53639 -13.21156 -13.20160 -13.03701 -12.81264 -12.71680 -12.52700 -12.50764 -12.38807 -12.18900 -12.00961 -11.90440 -11.80737 -11.73215 -11.63280 -11.43260 -11.30914 -11.05395 -10.93352 -10.35948 -10.07889 -9.68705 -9.33971 -8.85065 -7.82355 -5.13818 0.34863 0.49307 1.45411 1.48581 1.51116 1.56313 2.10045 2.55257 2.69281 3.05599 3.25156 3.33605 3.48128 3.59304 3.72248 3.78736 3.91572 4.06082 4.19925 4.21371 4.23064 4.29602 4.38569 4.41979 4.50927 4.54575 4.64491 4.67083 4.68611 4.74654 4.84198 4.85399 4.89857 4.95105 4.96722 5.04234 5.06980 5.08156 5.13430 5.16024 5.21565 5.27557 5.40552 5.50300 5.51914 5.57791 5.63894 5.64234 5.75807 5.83455 6.11801 6.23740 6.33750 6.57766 7.21008 7.25935 7.90002 8.30249 9.18304 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013993 B = 0.002308 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.573890 B =12130.253452 C =12904.486317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.122 4.122 3 C 0.178 3.822 4 N -0.609 5.609 5 C -0.265 4.265 6 H 0.069 0.931 7 C -0.040 4.040 8 N -0.903 5.903 9 Si 0.944 3.056 10 H -0.295 1.295 11 H -0.276 1.276 12 H -0.296 1.296 13 C 0.149 3.851 14 C 0.117 3.883 15 N -0.709 5.709 16 C 0.537 3.463 17 O -0.583 6.583 18 C -0.170 4.170 19 H 0.149 0.851 20 C -0.122 4.122 21 C -0.058 4.058 22 C -0.092 4.092 23 C -0.080 4.080 24 C -0.103 4.103 25 C -0.120 4.120 26 C -0.120 4.120 27 C -0.124 4.124 28 C -0.108 4.108 29 C -0.075 4.075 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.037 0.963 33 H 0.070 0.930 34 H 0.027 0.973 35 H 0.018 0.982 36 H 0.049 0.951 37 H 0.247 0.753 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.037 0.963 41 H 0.042 0.958 42 H 0.414 0.586 43 H 0.096 0.904 44 H 0.133 0.867 45 H 0.057 0.943 46 H 0.083 0.917 47 H 0.088 0.912 48 H 0.075 0.925 49 H 0.132 0.868 50 H 0.146 0.854 51 H 0.149 0.851 52 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.852 1.829 22.806 26.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.161 4.161 3 C 0.053 3.947 4 N -0.330 5.330 5 C -0.394 4.394 6 H 0.086 0.914 7 C -0.237 4.237 8 N -0.548 5.548 9 Si 0.774 3.226 10 H -0.223 1.223 11 H -0.201 1.201 12 H -0.223 1.223 13 C 0.022 3.978 14 C -0.010 4.010 15 N -0.360 5.360 16 C 0.324 3.676 17 O -0.464 6.464 18 C -0.191 4.191 19 H 0.166 0.834 20 C -0.159 4.159 21 C -0.058 4.058 22 C -0.129 4.129 23 C -0.117 4.117 24 C -0.104 4.104 25 C -0.138 4.138 26 C -0.138 4.138 27 C -0.142 4.142 28 C -0.125 4.125 29 C -0.075 4.075 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.088 0.912 34 H 0.046 0.954 35 H 0.037 0.963 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.250 0.750 43 H 0.115 0.885 44 H 0.151 0.849 45 H 0.076 0.924 46 H 0.102 0.898 47 H 0.106 0.894 48 H 0.093 0.907 49 H 0.150 0.850 50 H 0.164 0.836 51 H 0.166 0.834 52 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 13.535 2.544 22.322 26.229 hybrid contribution 0.070 0.112 -1.396 1.403 sum 13.605 2.655 20.926 25.101 Atomic orbital electron populations 1.21528 0.96172 1.00623 1.00345 1.21948 0.94926 0.99011 1.00233 1.20660 0.81761 0.95240 0.97079 1.44202 1.02187 1.84904 1.01743 1.19404 0.92665 1.42857 0.84520 0.91353 1.25256 0.98601 1.00551 0.99251 1.70292 1.20062 1.39528 1.24945 0.85601 0.78063 0.78598 0.80339 1.22296 1.20101 1.22260 1.20862 0.96590 0.92755 0.87641 1.21856 0.94653 1.00608 0.83854 1.45824 1.57436 1.09671 1.23104 1.20107 0.78397 0.83726 0.85326 1.90677 1.56519 1.27855 1.71323 1.22345 0.98896 1.01599 0.96237 0.83378 1.23052 0.98158 0.95354 0.99357 1.20211 0.86724 1.00597 0.98309 1.21838 0.96100 0.99247 0.95759 1.21049 0.97431 0.98929 0.94297 1.20724 0.94421 0.99124 0.96082 1.20878 0.96926 0.99033 0.96972 1.21406 0.99817 0.99183 0.93367 1.21370 0.92505 0.99388 1.00947 1.20873 0.99257 0.98149 0.94268 1.19697 0.93485 0.99852 0.94494 0.92951 0.93056 0.94387 0.91196 0.95426 0.96331 0.93298 0.94326 0.91953 0.92665 0.94411 0.93928 0.74979 0.88515 0.84901 0.92396 0.89799 0.89394 0.90702 0.84987 0.83582 0.83370 0.84476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.71 9.91 71.98 0.71 -4.00 16 2 C -0.12 -5.31 5.77 30.59 0.18 -5.14 16 3 C 0.18 8.38 4.88 86.38 0.42 8.80 16 4 N -0.61 -29.28 2.53 -702.01 -1.78 -31.06 16 5 C -0.27 -14.20 9.67 84.03 0.81 -13.38 16 6 H 0.07 3.64 7.96 -2.91 -0.02 3.62 16 7 C -0.04 -2.19 4.81 84.86 0.41 -1.79 16 8 N -0.90 -50.09 8.67 21.65 0.19 -49.90 16 9 Si 0.94 44.90 29.63 68.60 2.03 46.93 16 10 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 13 C 0.15 5.65 5.80 86.38 0.50 6.15 16 14 C 0.12 4.29 6.00 86.38 0.52 4.81 16 15 N -0.71 -20.15 5.56 -463.07 -2.57 -22.72 16 16 C 0.54 15.97 6.55 87.66 0.57 16.54 16 17 O -0.58 -22.39 15.41 -3.04 -0.05 -22.44 16 18 C -0.17 -3.59 6.06 -11.69 -0.07 -3.66 16 19 H 0.15 2.31 8.14 -2.39 -0.02 2.29 16 20 C -0.12 -2.33 9.74 30.43 0.30 -2.03 16 21 C -0.06 -1.20 2.34 -53.03 -0.12 -1.32 16 22 C -0.09 -2.15 6.62 31.36 0.21 -1.94 16 23 C -0.08 -1.63 6.77 30.58 0.21 -1.42 16 24 C -0.10 -2.02 6.14 -19.55 -0.12 -2.14 16 25 C -0.12 -1.95 10.03 22.29 0.22 -1.72 16 26 C -0.12 -1.58 10.05 22.24 0.22 -1.36 16 27 C -0.12 -1.57 10.05 22.24 0.22 -1.34 16 28 C -0.11 -1.60 9.98 22.30 0.22 -1.37 16 29 C -0.08 -1.42 5.92 -19.73 -0.12 -1.54 16 30 H 0.05 1.70 8.14 -2.39 -0.02 1.69 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 32 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 3.60 6.11 -2.39 -0.01 3.58 16 34 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.02 0.81 8.11 -2.39 -0.02 0.79 16 36 H 0.05 2.62 6.05 -2.39 -0.01 2.61 16 37 H 0.25 13.49 8.31 -92.71 -0.77 12.72 16 38 H 0.06 2.12 8.07 -2.38 -0.02 2.10 16 39 H 0.05 2.05 8.04 -2.39 -0.02 2.03 16 40 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.41 8.95 8.47 -92.71 -0.79 8.17 16 43 H 0.10 2.21 7.70 -2.39 -0.02 2.19 16 44 H 0.13 1.72 8.14 -2.38 -0.02 1.70 16 45 H 0.06 1.68 6.29 -2.38 -0.01 1.66 16 46 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 47 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.13 1.71 8.06 -2.91 -0.02 1.69 16 50 H 0.15 1.18 8.06 -2.91 -0.02 1.15 16 51 H 0.15 1.08 8.06 -2.91 -0.02 1.05 16 52 H 0.14 1.45 8.05 -2.91 -0.02 1.43 16 Total: -1.00 -66.41 417.12 3.23 -63.18 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: 0.11 Total: 23.86 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: 5.30 Total: -7.84 kcal Atomic # 7 Polarization: -99.52 SS G_CDS: -4.16 Total: -103.68 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.05 Total: -22.44 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -66.41 3.23 -63.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663688275.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.992 kcal (2) G-P(sol) polarization free energy of solvation -66.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds