Wall clock time and date at job start Wed Apr 1 2020 02:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46993 * 2 1 4 4 N 1.46491 * 109.47304 * 179.97438 * 3 2 1 5 5 C 1.36936 * 120.00147 * 275.47710 * 4 3 2 6 6 H 1.07998 * 120.00062 * 41.50980 * 5 4 3 7 7 C 1.38819 * 119.99903 * 221.50775 * 5 4 3 8 8 N 1.31613 * 120.00013 * 18.73503 * 7 5 4 9 9 Si 1.86799 * 119.99803 * 198.73805 * 7 5 4 10 10 H 1.48498 * 109.47282 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47173 * 120.00165 * 9 7 5 12 12 H 1.48503 * 109.46648 * 239.99662 * 9 7 5 13 13 C 1.46500 * 119.99827 * 95.47267 * 4 3 2 14 14 C 1.53001 * 109.47382 * 270.00450 * 13 4 3 15 15 N 1.46504 * 109.47117 * 180.02562 * 14 13 4 16 16 C 1.34774 * 120.00081 * 180.02562 * 15 14 13 17 17 O 1.21283 * 119.99849 * 359.97438 * 16 15 14 18 18 C 1.50698 * 120.00043 * 179.97438 * 16 15 14 19 19 H 1.08995 * 115.56447 * 57.87753 * 18 16 15 20 20 C 1.53128 * 117.51258 * 203.69084 * 18 16 15 21 21 C 1.52383 * 59.84802 * 107.43916 * 20 18 16 22 22 C 1.53775 * 121.20218 * 249.47037 * 21 20 18 23 23 C 1.54478 * 102.40954 * 190.12563 * 22 21 20 24 24 C 1.51427 * 105.21797 * 25.64820 * 23 22 21 25 25 C 1.38464 * 130.36409 * 163.12230 * 24 23 22 26 26 C 1.38092 * 120.26364 * 179.97438 * 25 24 23 27 27 C 1.38250 * 119.91859 * 359.97438 * 26 25 24 28 28 C 1.38083 * 119.93370 * 359.97438 * 27 26 25 29 29 C 1.38382 * 109.79744 * 343.08971 * 24 23 22 30 30 H 1.09002 * 109.47417 * 299.99428 * 1 2 3 31 31 H 1.09001 * 109.47674 * 60.00133 * 1 2 3 32 32 H 1.09002 * 109.46985 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46980 * 240.00272 * 2 1 3 34 34 H 1.09001 * 109.47264 * 120.00215 * 2 1 3 35 35 H 1.09002 * 109.46572 * 60.00055 * 3 2 1 36 36 H 1.09001 * 109.47291 * 300.00199 * 3 2 1 37 37 H 0.96995 * 120.00622 * 180.02562 * 8 7 5 38 38 H 1.09005 * 109.47277 * 149.99745 * 13 4 3 39 39 H 1.08999 * 109.47131 * 30.00380 * 13 4 3 40 40 H 1.08998 * 109.46957 * 59.99811 * 14 13 4 41 41 H 1.09000 * 109.46622 * 299.99604 * 14 13 4 42 42 H 0.97003 * 119.99951 * 359.97438 * 15 14 13 43 43 H 1.09000 * 117.51398 * 359.97438 * 20 18 16 44 44 H 1.08998 * 117.50829 * 214.88899 * 20 18 16 45 45 H 1.09002 * 110.85467 * 71.84067 * 22 21 20 46 46 H 1.08998 * 110.85572 * 308.40953 * 22 21 20 47 47 H 1.09003 * 110.29577 * 144.58189 * 23 22 21 48 48 H 1.08997 * 110.30147 * 266.71187 * 23 22 21 49 49 H 1.08000 * 119.86831 * 359.93799 * 25 24 23 50 50 H 1.08004 * 120.04038 * 180.02562 * 26 25 24 51 51 H 1.08004 * 120.03868 * 180.02562 * 27 26 25 52 52 H 1.08004 * 119.86126 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1891 1.3296 1.1814 6 1 3.8523 0.6346 1.9363 7 6 5.3157 2.1084 1.4080 8 7 5.5225 3.1914 0.6892 9 14 6.5381 1.6192 2.7331 10 1 6.0787 0.3714 3.3941 11 1 7.8706 1.3926 2.1180 12 1 6.6365 2.7054 3.7409 13 6 4.2379 1.5635 -1.2621 14 6 4.4931 0.1696 -1.8391 15 7 5.2267 0.2905 -3.1015 16 6 5.5635 -0.8157 -3.7937 17 8 5.2598 -1.9113 -3.3714 18 6 6.3176 -0.6913 -5.0926 19 1 7.2740 -0.1720 -5.0333 20 6 6.1987 -1.8447 -6.0928 21 6 5.5003 -0.5185 -6.3673 22 6 3.9679 -0.4002 -6.3196 23 6 3.7250 1.0073 -6.9081 24 6 4.9237 1.2808 -7.7920 25 6 5.1048 2.2216 -8.7916 26 6 6.3026 2.2887 -9.4755 27 6 7.3260 1.4140 -9.1613 28 6 7.1484 0.4755 -8.1640 29 6 5.9477 0.4048 -7.4773 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 6.3099 3.7354 0.8473 38 1 5.1902 2.0627 -1.0830 39 1 3.6491 2.1473 -1.9695 40 1 3.5408 -0.3295 -2.0181 41 1 5.0820 -0.4142 -1.1316 42 1 5.4692 1.1668 -3.4395 43 1 5.5755 -2.6934 -5.8109 44 1 7.0774 -2.0845 -6.6914 45 1 3.6059 -0.4593 -5.2931 46 1 3.5001 -1.1656 -6.9388 47 1 2.8093 1.0171 -7.4993 48 1 3.6679 1.7465 -6.1091 49 1 4.3058 2.9052 -9.0379 50 1 6.4400 3.0243 -10.2544 51 1 8.2637 1.4650 -9.6946 52 1 7.9489 -0.2070 -7.9192 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663688283.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:07 Heat of formation + Delta-G solvation = 4.800701 kcal Electronic energy + Delta-G solvation = -29911.692886 eV Core-core repulsion = 26068.936242 eV Total energy + Delta-G solvation = -3842.756643 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.81381 -40.37115 -38.34823 -37.67159 -35.74530 -34.76934 -34.60098 -32.64763 -31.57936 -29.96606 -29.79952 -27.35131 -26.39261 -25.54008 -24.19808 -23.62952 -22.54065 -21.97103 -21.88715 -21.31402 -20.33751 -18.68705 -17.88822 -17.60422 -17.05523 -16.81408 -16.37248 -16.22790 -16.03060 -15.87851 -15.73898 -15.38784 -15.12603 -14.84036 -14.60867 -14.33535 -14.19838 -14.00930 -13.55158 -13.34662 -13.24409 -13.18409 -13.08963 -12.93969 -12.73229 -12.65901 -12.52313 -12.51275 -12.25743 -12.06226 -12.01550 -11.88052 -11.71884 -11.67789 -11.42490 -11.32411 -11.30118 -10.93636 -10.56018 -10.05429 -9.67826 -9.32910 -8.55509 -7.86524 -5.55932 0.36624 0.50305 1.40828 1.45421 1.53266 1.54726 2.11201 2.47900 2.61554 3.03533 3.20417 3.32634 3.48482 3.55112 3.71636 3.80435 3.91627 4.07626 4.20284 4.20931 4.23473 4.33480 4.36342 4.39608 4.45637 4.52854 4.55964 4.67596 4.68536 4.71249 4.74258 4.84079 4.85735 4.88800 4.95419 4.98720 5.07309 5.09966 5.15376 5.15793 5.22166 5.25723 5.28030 5.40264 5.43187 5.58301 5.61935 5.63800 5.64457 5.71277 5.76179 6.12548 6.45328 6.57305 7.14015 7.23457 7.79951 8.34764 9.08222 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011262 B = 0.002797 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.730089 B =10008.977322 C =10742.264799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.134 4.134 3 C 0.146 3.854 4 N -0.596 5.596 5 C -0.272 4.272 6 H 0.048 0.952 7 C -0.024 4.024 8 N -0.910 5.910 9 Si 0.951 3.049 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.285 1.285 13 C 0.152 3.848 14 C 0.121 3.879 15 N -0.708 5.708 16 C 0.540 3.460 17 O -0.586 6.586 18 C -0.174 4.174 19 H 0.143 0.857 20 C -0.123 4.123 21 C -0.058 4.058 22 C -0.091 4.091 23 C -0.077 4.077 24 C -0.100 4.100 25 C -0.119 4.119 26 C -0.120 4.120 27 C -0.127 4.127 28 C -0.111 4.111 29 C -0.077 4.077 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.045 0.955 34 H 0.037 0.963 35 H 0.034 0.966 36 H 0.049 0.951 37 H 0.254 0.746 38 H 0.067 0.933 39 H 0.043 0.957 40 H 0.049 0.951 41 H 0.029 0.971 42 H 0.409 0.591 43 H 0.098 0.902 44 H 0.128 0.872 45 H 0.059 0.941 46 H 0.088 0.912 47 H 0.092 0.908 48 H 0.080 0.920 49 H 0.135 0.865 50 H 0.146 0.854 51 H 0.146 0.854 52 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.332 -2.473 -22.427 22.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.174 4.174 3 C 0.021 3.979 4 N -0.317 5.317 5 C -0.402 4.402 6 H 0.066 0.934 7 C -0.223 4.223 8 N -0.553 5.553 9 Si 0.779 3.221 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.212 1.212 13 C 0.024 3.976 14 C -0.006 4.006 15 N -0.358 5.358 16 C 0.327 3.673 17 O -0.466 6.466 18 C -0.194 4.194 19 H 0.160 0.840 20 C -0.160 4.160 21 C -0.058 4.058 22 C -0.128 4.128 23 C -0.114 4.114 24 C -0.100 4.100 25 C -0.137 4.137 26 C -0.138 4.138 27 C -0.144 4.144 28 C -0.129 4.129 29 C -0.077 4.077 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.047 0.953 42 H 0.245 0.755 43 H 0.116 0.884 44 H 0.146 0.854 45 H 0.078 0.922 46 H 0.106 0.894 47 H 0.110 0.890 48 H 0.098 0.902 49 H 0.153 0.847 50 H 0.164 0.836 51 H 0.164 0.836 52 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.467 -3.075 -22.064 22.282 hybrid contribution 0.987 0.176 1.115 1.500 sum 0.521 -2.899 -20.949 21.155 Atomic orbital electron populations 1.21653 0.94210 1.01776 1.02010 1.22009 0.96452 0.98766 1.00173 1.21043 0.83415 0.94463 0.98971 1.43787 1.00802 1.85218 1.01916 1.19130 1.09273 1.16179 0.95633 0.93392 1.25875 1.02210 0.94411 0.99775 1.70079 1.28090 1.13724 1.43417 0.85488 0.79231 0.77935 0.79460 1.19751 1.21516 1.21182 1.20830 0.98694 0.91735 0.86304 1.21934 0.94312 1.00870 0.83446 1.45960 1.57152 1.09447 1.23262 1.20091 0.78353 0.83588 0.85235 1.90660 1.56678 1.28089 1.71213 1.22303 1.01818 1.07868 0.87447 0.83963 1.23032 1.03321 0.91078 0.98607 1.20378 0.94379 0.98440 0.92634 1.21852 0.91804 0.97982 1.01150 1.21042 0.96439 0.96134 0.97803 1.20741 0.96468 0.96093 0.96732 1.20891 0.98782 0.98339 0.95654 1.21405 0.92893 0.99458 1.00054 1.21344 1.00141 0.95325 0.97619 1.20862 0.96304 0.99518 0.96240 1.19772 0.94967 0.96828 0.96163 0.92613 0.92039 0.92272 0.93668 0.94405 0.94748 0.93304 0.93692 0.91539 0.93843 0.93284 0.95268 0.75524 0.88391 0.85357 0.92245 0.89371 0.88989 0.90162 0.84683 0.83596 0.83649 0.85027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 9.91 71.98 0.71 -3.14 16 2 C -0.13 -4.88 6.23 30.59 0.19 -4.69 16 3 C 0.15 6.07 5.72 86.38 0.49 6.57 16 4 N -0.60 -29.16 2.40 -702.01 -1.69 -30.84 16 5 C -0.27 -14.81 9.43 84.04 0.79 -14.02 16 6 H 0.05 2.68 7.90 -2.91 -0.02 2.66 16 7 C -0.02 -1.32 4.99 84.86 0.42 -0.90 16 8 N -0.91 -51.32 11.59 21.65 0.25 -51.07 16 9 Si 0.95 44.51 29.59 68.60 2.03 46.54 16 10 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 12 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 13 C 0.15 6.77 5.44 86.38 0.47 7.24 16 14 C 0.12 4.98 6.00 86.38 0.52 5.49 16 15 N -0.71 -23.97 5.56 -463.06 -2.57 -26.54 16 16 C 0.54 18.19 6.09 87.66 0.53 18.72 16 17 O -0.59 -24.51 16.53 -3.04 -0.05 -24.56 16 18 C -0.17 -4.31 6.06 -11.69 -0.07 -4.38 16 19 H 0.14 3.09 8.14 -2.39 -0.02 3.07 16 20 C -0.12 -2.64 9.76 30.43 0.30 -2.35 16 21 C -0.06 -1.25 2.35 -52.93 -0.12 -1.38 16 22 C -0.09 -1.97 6.66 31.36 0.21 -1.76 16 23 C -0.08 -1.47 6.78 30.58 0.21 -1.26 16 24 C -0.10 -1.97 6.14 -19.54 -0.12 -2.09 16 25 C -0.12 -1.98 10.03 22.29 0.22 -1.76 16 26 C -0.12 -1.74 10.05 22.24 0.22 -1.51 16 27 C -0.13 -1.85 10.04 22.24 0.22 -1.62 16 28 C -0.11 -1.91 9.98 22.30 0.22 -1.68 16 29 C -0.08 -1.56 5.94 -19.62 -0.12 -1.67 16 30 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.04 1.69 6.65 -2.39 -0.02 1.67 16 34 H 0.04 1.50 8.14 -2.39 -0.02 1.49 16 35 H 0.03 1.48 8.08 -2.39 -0.02 1.46 16 36 H 0.05 1.86 7.83 -2.39 -0.02 1.84 16 37 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 38 H 0.07 3.38 5.71 -2.38 -0.01 3.36 16 39 H 0.04 1.78 7.86 -2.39 -0.02 1.76 16 40 H 0.05 2.05 6.65 -2.39 -0.02 2.03 16 41 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.41 12.04 8.47 -92.71 -0.79 11.25 16 43 H 0.10 2.38 7.87 -2.39 -0.02 2.36 16 44 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.06 1.54 6.85 -2.39 -0.02 1.53 16 46 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 47 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 50 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 51 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 52 H 0.13 1.81 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -66.86 420.45 3.40 -63.47 By element: Atomic # 1 Polarization: 29.09 SS G_CDS: 0.12 Total: 29.21 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: 5.31 Total: -6.21 kcal Atomic # 7 Polarization: -104.45 SS G_CDS: -4.01 Total: -108.46 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.05 Total: -24.56 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -66.86 3.40 -63.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663688283.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.270 kcal (2) G-P(sol) polarization free energy of solvation -66.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds