Wall clock time and date at job start Wed Apr 1 2020 02:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47031 * 2 1 4 4 N 1.46498 * 109.47038 * 179.97438 * 3 2 1 5 5 C 1.36935 * 119.99991 * 275.36980 * 4 3 2 6 6 H 1.07994 * 119.99963 * 41.69022 * 5 4 3 7 7 C 1.38814 * 119.99968 * 221.68394 * 5 4 3 8 8 N 1.31616 * 119.99976 * 18.31013 * 7 5 4 9 9 Si 1.86804 * 119.99936 * 198.31412 * 7 5 4 10 10 H 1.48498 * 109.47062 * 89.99912 * 9 7 5 11 11 H 1.48500 * 109.46877 * 210.00123 * 9 7 5 12 12 H 1.48501 * 109.46967 * 329.99894 * 9 7 5 13 13 C 1.46501 * 119.99776 * 95.37823 * 4 3 2 14 14 C 1.53003 * 109.46544 * 269.99576 * 13 4 3 15 15 N 1.46511 * 109.46945 * 180.02562 * 14 13 4 16 16 C 1.34772 * 119.99806 * 180.02562 * 15 14 13 17 17 O 1.21280 * 120.00523 * 359.97438 * 16 15 14 18 18 C 1.50702 * 120.00020 * 179.72481 * 16 15 14 19 19 H 1.08998 * 115.55563 * 308.67358 * 18 16 15 20 20 C 1.53116 * 117.51547 * 162.93041 * 18 16 15 21 21 C 1.52372 * 117.51291 * 94.40454 * 18 16 15 22 22 C 1.53785 * 121.20027 * 217.97598 * 21 18 16 23 23 C 1.54470 * 102.21324 * 169.97667 * 22 21 18 24 24 C 1.51428 * 105.23546 * 334.27963 * 23 22 21 25 25 C 1.38458 * 130.36327 * 196.82376 * 24 23 22 26 26 C 1.38099 * 120.26492 * 180.02562 * 25 24 23 27 27 C 1.38247 * 119.91579 * 0.02562 * 26 25 24 28 28 C 1.38088 * 119.93604 * 359.97403 * 27 26 25 29 29 C 1.38382 * 109.79780 * 16.86096 * 24 23 22 30 30 H 1.09003 * 109.47000 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47283 * 299.99473 * 1 2 3 32 32 H 1.08995 * 109.47267 * 60.00384 * 1 2 3 33 33 H 1.08999 * 109.47004 * 240.00064 * 2 1 3 34 34 H 1.08994 * 109.46889 * 120.00290 * 2 1 3 35 35 H 1.09004 * 109.47238 * 59.99681 * 3 2 1 36 36 H 1.09006 * 109.47213 * 300.00101 * 3 2 1 37 37 H 0.96996 * 120.00073 * 179.97438 * 8 7 5 38 38 H 1.08999 * 109.47577 * 150.00231 * 13 4 3 39 39 H 1.08996 * 109.47481 * 29.98960 * 13 4 3 40 40 H 1.08999 * 109.47363 * 60.00301 * 14 13 4 41 41 H 1.09002 * 109.47552 * 300.00013 * 14 13 4 42 42 H 0.96994 * 119.99725 * 0.02562 * 15 14 13 43 43 H 1.09001 * 117.51769 * 359.97438 * 20 18 16 44 44 H 1.09002 * 117.51273 * 145.11029 * 20 18 16 45 45 H 1.09006 * 110.85402 * 288.16097 * 22 21 18 46 46 H 1.08998 * 110.85132 * 51.79418 * 22 21 18 47 47 H 1.08992 * 110.29285 * 215.33774 * 23 22 21 48 48 H 1.09000 * 110.37229 * 93.25805 * 23 22 21 49 49 H 1.07996 * 119.87125 * 0.07166 * 25 24 23 50 50 H 1.08005 * 120.04475 * 180.02562 * 26 25 24 51 51 H 1.08007 * 120.03500 * 179.97438 * 27 26 25 52 52 H 1.08000 * 119.85496 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.3317 1.1816 6 1 3.8540 0.6360 1.9366 7 6 5.3136 2.1134 1.4083 8 7 5.5222 3.1921 0.6836 9 14 6.5309 1.6344 2.7419 10 1 7.5710 0.7446 2.1661 11 1 7.1725 2.8569 3.2887 12 1 5.8166 0.9209 3.8309 13 6 4.2380 1.5612 -1.2623 14 6 4.4932 0.1663 -1.8367 15 7 5.2268 0.2849 -3.0994 16 6 5.5636 -0.8226 -3.7896 17 8 5.2600 -1.9174 -3.3653 18 6 6.3128 -0.7004 -5.0915 19 1 5.8794 -0.0161 -5.8209 20 6 7.0124 -1.9534 -5.6254 21 6 7.8320 -0.8067 -5.0421 22 6 8.7216 0.0710 -5.9383 23 6 10.1295 -0.1935 -5.3605 24 6 9.8990 -0.5940 -3.9184 25 6 10.7786 -0.6449 -2.8504 26 6 10.3386 -1.0479 -1.6049 27 6 9.0149 -1.4025 -1.4228 28 6 8.1355 -1.3526 -2.4864 29 6 8.5739 -0.9487 -3.7366 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 6.3077 3.7386 0.8422 38 1 5.1903 2.0605 -1.0841 39 1 3.6491 2.1437 -1.9708 40 1 3.5409 -0.3332 -2.0150 41 1 5.0820 -0.4164 -1.1282 42 1 5.4700 1.1604 -3.4386 43 1 6.9311 -2.8658 -5.0347 44 1 7.0397 -2.0929 -6.7061 45 1 8.6621 -0.2506 -6.9782 46 1 8.4532 1.1228 -5.8404 47 1 10.7343 0.7120 -5.4092 48 1 10.6170 -1.0027 -5.9042 49 1 11.8128 -0.3678 -2.9916 50 1 11.0277 -1.0859 -0.7741 51 1 8.6687 -1.7183 -0.4497 52 1 7.1016 -1.6296 -2.3426 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663688285.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:14 Heat of formation + Delta-G solvation = 22.028912 kcal Electronic energy + Delta-G solvation = -30670.666753 eV Core-core repulsion = 26828.657181 eV Total energy + Delta-G solvation = -3842.009572 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.83696 -38.96702 -36.96691 -36.35622 -34.20342 -33.73087 -32.85016 -30.82376 -30.55922 -28.90636 -28.28862 -25.56147 -25.19569 -24.31252 -22.78419 -22.61323 -21.03321 -20.88024 -20.29219 -19.93529 -19.32984 -17.24375 -16.50309 -16.07375 -15.67826 -15.37206 -15.14191 -14.97369 -14.87195 -14.40229 -14.15338 -14.03321 -13.71756 -13.53817 -13.04239 -12.97574 -12.77744 -12.68388 -12.51410 -12.42118 -12.10764 -11.78435 -11.68396 -11.56889 -11.49451 -11.17866 -11.07920 -10.92630 -10.77744 -10.73260 -10.49844 -10.46203 -10.35272 -10.24176 -10.10403 -9.85261 -9.71814 -9.44948 -8.65022 -8.55926 -8.43796 -8.33118 -6.56576 -5.83140 -3.48250 1.39257 1.52859 2.81912 3.33550 3.41577 3.42137 3.45368 3.69867 4.03996 4.29306 4.42521 4.46285 4.52330 4.75816 4.85461 5.15577 5.16658 5.20700 5.28534 5.29421 5.33841 5.47379 5.49344 5.57387 5.63121 5.67717 5.69108 5.76976 5.77169 5.87200 5.93428 6.03127 6.04932 6.09850 6.12176 6.23316 6.26933 6.29557 6.42892 6.54111 6.57153 6.63292 6.67185 6.71632 6.74963 6.90686 6.98931 7.01947 7.13210 7.19310 7.52574 7.80329 7.95270 8.51010 8.60233 9.15562 9.75013 10.35863 11.16277 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009824 B = 0.003968 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2849.567665 B = 7053.963623 C = 8929.385006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C 0.148 3.852 4 N -0.579 5.579 5 C -0.264 4.264 6 H 0.059 0.941 7 C 0.020 3.980 8 N -0.886 5.886 9 Si 0.895 3.105 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.276 1.276 13 C 0.142 3.858 14 C 0.098 3.902 15 N -0.713 5.713 16 C 0.540 3.460 17 O -0.548 6.548 18 C -0.175 4.175 19 H 0.128 0.872 20 C -0.126 4.126 21 C -0.067 4.067 22 C -0.084 4.084 23 C -0.076 4.076 24 C -0.096 4.096 25 C -0.114 4.114 26 C -0.117 4.117 27 C -0.114 4.114 28 C -0.100 4.100 29 C -0.067 4.067 30 H 0.042 0.958 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.046 0.954 36 H 0.033 0.967 37 H 0.255 0.745 38 H 0.094 0.906 39 H 0.028 0.972 40 H 0.052 0.948 41 H 0.063 0.937 42 H 0.398 0.602 43 H 0.108 0.892 44 H 0.106 0.894 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.075 0.925 48 H 0.079 0.921 49 H 0.117 0.883 50 H 0.122 0.878 51 H 0.124 0.876 52 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.508 -5.293 -13.986 16.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.185 4.185 3 C 0.022 3.978 4 N -0.298 5.298 5 C -0.394 4.394 6 H 0.077 0.923 7 C -0.181 4.181 8 N -0.528 5.528 9 Si 0.724 3.276 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.201 1.201 13 C 0.014 3.986 14 C -0.027 4.027 15 N -0.362 5.362 16 C 0.326 3.674 17 O -0.427 6.427 18 C -0.196 4.196 19 H 0.146 0.854 20 C -0.163 4.163 21 C -0.067 4.067 22 C -0.121 4.121 23 C -0.113 4.113 24 C -0.096 4.096 25 C -0.132 4.132 26 C -0.135 4.135 27 C -0.132 4.132 28 C -0.117 4.117 29 C -0.067 4.067 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.112 0.888 39 H 0.046 0.954 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.231 0.769 43 H 0.126 0.874 44 H 0.124 0.876 45 H 0.097 0.903 46 H 0.099 0.901 47 H 0.094 0.906 48 H 0.098 0.902 49 H 0.135 0.865 50 H 0.140 0.860 51 H 0.142 0.858 52 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.393 -5.886 -13.612 16.149 hybrid contribution 0.729 0.207 0.672 1.013 sum 7.122 -5.678 -12.940 15.824 Atomic orbital electron populations 1.21722 0.97368 1.00373 1.00984 1.22184 0.93788 1.01002 1.01509 1.20937 0.85155 0.92861 0.98843 1.43543 0.99353 1.84965 1.01989 1.18979 1.08886 1.16631 0.94869 0.92322 1.25289 1.00809 0.94288 0.97724 1.69972 1.27813 1.13099 1.41887 0.86424 0.81642 0.77681 0.81872 1.21061 1.21653 1.20119 1.21000 0.99956 0.91044 0.86580 1.22473 0.94732 1.02780 0.82744 1.46091 1.57267 1.08506 1.24381 1.19471 0.78801 0.84624 0.84501 1.90672 1.55364 1.26690 1.69949 1.22345 0.94317 1.04380 0.98589 0.85384 1.23024 0.99531 0.92816 1.00909 1.20385 0.89703 1.01795 0.94838 1.21859 0.93064 0.99345 0.97857 1.20996 0.97240 1.01450 0.91621 1.20467 0.93911 0.99956 0.95282 1.20507 0.99004 1.01530 0.92156 1.21055 0.96046 0.99516 0.96860 1.21106 0.93422 0.99856 0.98864 1.21119 1.01070 0.98029 0.91533 1.19568 0.94110 1.00340 0.92659 0.93838 0.93201 0.93493 0.92995 0.92397 0.93605 0.94854 0.93512 0.88838 0.95369 0.92990 0.91897 0.76897 0.87395 0.87586 0.90254 0.90103 0.90606 0.90248 0.86477 0.86037 0.85840 0.84933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.91 37.16 0.37 -1.83 16 2 C -0.14 -2.68 6.23 -26.73 -0.17 -2.84 16 3 C 0.15 3.10 5.72 -4.05 -0.02 3.08 16 4 N -0.58 -13.96 2.40 -173.24 -0.42 -14.37 16 5 C -0.26 -7.05 9.43 -15.06 -0.14 -7.19 16 6 H 0.06 1.59 7.89 -52.49 -0.41 1.18 16 7 C 0.02 0.54 5.00 -17.43 -0.09 0.45 16 8 N -0.89 -24.75 11.58 55.49 0.64 -24.11 16 9 Si 0.89 21.40 29.59 -169.99 -5.03 16.37 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 13 C 0.14 3.14 5.44 -4.04 -0.02 3.12 16 14 C 0.10 1.98 6.00 -4.03 -0.02 1.95 16 15 N -0.71 -12.04 5.56 -60.29 -0.33 -12.38 16 16 C 0.54 9.04 5.18 -10.99 -0.06 8.98 16 17 O -0.55 -11.04 14.98 5.56 0.08 -10.96 16 18 C -0.18 -2.21 6.06 -92.03 -0.56 -2.77 16 19 H 0.13 1.28 8.14 -51.93 -0.42 0.85 16 20 C -0.13 -1.45 9.78 -26.91 -0.26 -1.71 16 21 C -0.07 -0.81 2.34 -155.75 -0.36 -1.17 16 22 C -0.08 -0.77 6.85 -25.55 -0.18 -0.95 16 23 C -0.08 -0.73 6.77 -26.75 -0.18 -0.91 16 24 C -0.10 -1.26 6.14 -104.13 -0.64 -1.90 16 25 C -0.11 -1.47 10.03 -39.55 -0.40 -1.87 16 26 C -0.12 -1.64 10.05 -39.63 -0.40 -2.03 16 27 C -0.11 -1.85 10.04 -39.63 -0.40 -2.25 16 28 C -0.10 -1.70 9.25 -39.54 -0.37 -2.07 16 29 C -0.07 -0.99 5.80 -104.41 -0.61 -1.59 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.99 6.65 -51.93 -0.35 0.64 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 36 H 0.03 0.65 7.83 -51.93 -0.41 0.25 16 37 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.09 2.34 5.71 -51.93 -0.30 2.05 16 39 H 0.03 0.59 7.86 -51.93 -0.41 0.18 16 40 H 0.05 1.08 6.65 -51.93 -0.35 0.73 16 41 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 42 H 0.40 5.90 8.47 -40.82 -0.35 5.56 16 43 H 0.11 1.46 7.78 -51.93 -0.40 1.06 16 44 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 46 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 50 H 0.12 1.43 8.06 -52.48 -0.42 1.00 16 51 H 0.12 1.94 8.06 -52.48 -0.42 1.52 16 52 H 0.13 2.54 4.85 -52.49 -0.25 2.29 16 LS Contribution 415.24 15.07 6.26 6.26 Total: -1.00 -30.79 415.24 -11.99 -42.78 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -8.69 Total: 9.93 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -4.50 Total: -13.52 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: -0.11 Total: -50.86 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.08 Total: -10.96 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -30.79 -11.99 -42.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663688285.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.808 kcal (2) G-P(sol) polarization free energy of solvation -30.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds