Wall clock time and date at job start Wed Apr 1 2020 02:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47031 * 2 1 4 4 N 1.46498 * 109.47038 * 179.97438 * 3 2 1 5 5 C 1.36935 * 119.99991 * 275.36980 * 4 3 2 6 6 H 1.07994 * 119.99963 * 41.69022 * 5 4 3 7 7 C 1.38814 * 119.99968 * 221.68394 * 5 4 3 8 8 N 1.31616 * 119.99976 * 18.31013 * 7 5 4 9 9 Si 1.86804 * 119.99936 * 198.31412 * 7 5 4 10 10 H 1.48498 * 109.47062 * 89.99912 * 9 7 5 11 11 H 1.48500 * 109.46877 * 210.00123 * 9 7 5 12 12 H 1.48501 * 109.46967 * 329.99894 * 9 7 5 13 13 C 1.46501 * 119.99776 * 95.37823 * 4 3 2 14 14 C 1.53003 * 109.46544 * 269.99576 * 13 4 3 15 15 N 1.46511 * 109.46945 * 180.02562 * 14 13 4 16 16 C 1.34772 * 119.99806 * 180.02562 * 15 14 13 17 17 O 1.21280 * 120.00523 * 359.97438 * 16 15 14 18 18 C 1.50702 * 120.00020 * 179.72481 * 16 15 14 19 19 H 1.08998 * 115.55563 * 308.67358 * 18 16 15 20 20 C 1.53116 * 117.51547 * 162.93041 * 18 16 15 21 21 C 1.52372 * 117.51291 * 94.40454 * 18 16 15 22 22 C 1.53785 * 121.20027 * 217.97598 * 21 18 16 23 23 C 1.54470 * 102.21324 * 169.97667 * 22 21 18 24 24 C 1.51428 * 105.23546 * 334.27963 * 23 22 21 25 25 C 1.38458 * 130.36327 * 196.82376 * 24 23 22 26 26 C 1.38099 * 120.26492 * 180.02562 * 25 24 23 27 27 C 1.38247 * 119.91579 * 0.02562 * 26 25 24 28 28 C 1.38088 * 119.93604 * 359.97403 * 27 26 25 29 29 C 1.38382 * 109.79780 * 16.86096 * 24 23 22 30 30 H 1.09003 * 109.47000 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47283 * 299.99473 * 1 2 3 32 32 H 1.08995 * 109.47267 * 60.00384 * 1 2 3 33 33 H 1.08999 * 109.47004 * 240.00064 * 2 1 3 34 34 H 1.08994 * 109.46889 * 120.00290 * 2 1 3 35 35 H 1.09004 * 109.47238 * 59.99681 * 3 2 1 36 36 H 1.09006 * 109.47213 * 300.00101 * 3 2 1 37 37 H 0.96996 * 120.00073 * 179.97438 * 8 7 5 38 38 H 1.08999 * 109.47577 * 150.00231 * 13 4 3 39 39 H 1.08996 * 109.47481 * 29.98960 * 13 4 3 40 40 H 1.08999 * 109.47363 * 60.00301 * 14 13 4 41 41 H 1.09002 * 109.47552 * 300.00013 * 14 13 4 42 42 H 0.96994 * 119.99725 * 0.02562 * 15 14 13 43 43 H 1.09001 * 117.51769 * 359.97438 * 20 18 16 44 44 H 1.09002 * 117.51273 * 145.11029 * 20 18 16 45 45 H 1.09006 * 110.85402 * 288.16097 * 22 21 18 46 46 H 1.08998 * 110.85132 * 51.79418 * 22 21 18 47 47 H 1.08992 * 110.29285 * 215.33774 * 23 22 21 48 48 H 1.09000 * 110.37229 * 93.25805 * 23 22 21 49 49 H 1.07996 * 119.87125 * 0.07166 * 25 24 23 50 50 H 1.08005 * 120.04475 * 180.02562 * 26 25 24 51 51 H 1.08007 * 120.03500 * 179.97438 * 27 26 25 52 52 H 1.08000 * 119.85496 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.3317 1.1816 6 1 3.8540 0.6360 1.9366 7 6 5.3136 2.1134 1.4083 8 7 5.5222 3.1921 0.6836 9 14 6.5309 1.6344 2.7419 10 1 7.5710 0.7446 2.1661 11 1 7.1725 2.8569 3.2887 12 1 5.8166 0.9209 3.8309 13 6 4.2380 1.5612 -1.2623 14 6 4.4932 0.1663 -1.8367 15 7 5.2268 0.2849 -3.0994 16 6 5.5636 -0.8226 -3.7896 17 8 5.2600 -1.9174 -3.3653 18 6 6.3128 -0.7004 -5.0915 19 1 5.8794 -0.0161 -5.8209 20 6 7.0124 -1.9534 -5.6254 21 6 7.8320 -0.8067 -5.0421 22 6 8.7216 0.0710 -5.9383 23 6 10.1295 -0.1935 -5.3605 24 6 9.8990 -0.5940 -3.9184 25 6 10.7786 -0.6449 -2.8504 26 6 10.3386 -1.0479 -1.6049 27 6 9.0149 -1.4025 -1.4228 28 6 8.1355 -1.3526 -2.4864 29 6 8.5739 -0.9487 -3.7366 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 6.3077 3.7386 0.8422 38 1 5.1903 2.0605 -1.0841 39 1 3.6491 2.1437 -1.9708 40 1 3.5409 -0.3332 -2.0150 41 1 5.0820 -0.4164 -1.1282 42 1 5.4700 1.1604 -3.4386 43 1 6.9311 -2.8658 -5.0347 44 1 7.0397 -2.0929 -6.7061 45 1 8.6621 -0.2506 -6.9782 46 1 8.4532 1.1228 -5.8404 47 1 10.7343 0.7120 -5.4092 48 1 10.6170 -1.0027 -5.9042 49 1 11.8128 -0.3678 -2.9916 50 1 11.0277 -1.0859 -0.7741 51 1 8.6687 -1.7183 -0.4497 52 1 7.1016 -1.6296 -2.3426 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663688285.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:13 Heat of formation + Delta-G solvation = 6.361618 kcal Electronic energy + Delta-G solvation = -30671.346138 eV Core-core repulsion = 26828.657181 eV Total energy + Delta-G solvation = -3842.688957 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.91073 -40.26660 -38.37313 -37.81239 -35.74418 -34.69695 -34.62119 -32.65879 -31.66460 -30.07351 -29.74103 -27.37128 -26.31095 -25.58741 -24.21121 -23.66507 -22.56137 -22.06767 -21.91127 -21.18308 -20.47217 -18.81039 -18.12660 -17.20271 -17.09119 -16.79244 -16.68571 -16.29880 -16.02027 -15.77809 -15.70471 -15.41795 -15.03693 -14.82169 -14.61704 -14.35915 -14.25993 -13.98710 -13.71674 -13.36729 -13.31718 -13.12008 -13.06730 -12.96494 -12.67884 -12.62099 -12.57154 -12.52786 -12.28351 -12.08835 -12.07455 -11.90476 -11.73867 -11.68977 -11.39433 -11.36304 -11.23364 -10.85209 -10.58093 -10.04435 -9.77818 -9.37906 -8.57494 -7.88647 -5.58426 0.29032 0.38974 1.37935 1.41950 1.48369 1.53913 2.13469 2.45074 2.60226 3.00085 3.18871 3.36344 3.48469 3.58596 3.71996 3.84641 3.93830 4.07432 4.12997 4.13474 4.20193 4.31104 4.34220 4.38251 4.49553 4.52859 4.60383 4.62617 4.65480 4.69079 4.76742 4.82296 4.83146 4.93120 4.96205 5.02881 5.11777 5.13227 5.14431 5.19872 5.23442 5.24829 5.30564 5.40351 5.40833 5.48194 5.57290 5.59627 5.61487 5.63931 5.69015 6.04090 6.43163 6.58972 7.12137 7.25654 7.77814 8.32551 9.05847 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009824 B = 0.003968 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2849.567665 B = 7053.963623 C = 8929.385006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.134 4.134 3 C 0.147 3.853 4 N -0.596 5.596 5 C -0.272 4.272 6 H 0.047 0.953 7 C -0.020 4.020 8 N -0.908 5.908 9 Si 0.946 3.054 10 H -0.289 1.289 11 H -0.286 1.286 12 H -0.270 1.270 13 C 0.151 3.849 14 C 0.124 3.876 15 N -0.709 5.709 16 C 0.537 3.463 17 O -0.590 6.590 18 C -0.181 4.181 19 H 0.166 0.834 20 C -0.117 4.117 21 C -0.066 4.066 22 C -0.076 4.076 23 C -0.073 4.073 24 C -0.097 4.097 25 C -0.114 4.114 26 C -0.123 4.123 27 C -0.146 4.146 28 C -0.130 4.130 29 C -0.086 4.086 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.043 0.957 34 H 0.036 0.964 35 H 0.035 0.965 36 H 0.049 0.951 37 H 0.254 0.746 38 H 0.066 0.934 39 H 0.044 0.956 40 H 0.047 0.953 41 H 0.022 0.978 42 H 0.410 0.590 43 H 0.077 0.923 44 H 0.149 0.851 45 H 0.114 0.886 46 H 0.087 0.913 47 H 0.096 0.904 48 H 0.100 0.900 49 H 0.151 0.849 50 H 0.142 0.858 51 H 0.108 0.892 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.711 -4.521 -17.221 19.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.174 4.174 3 C 0.021 3.979 4 N -0.317 5.317 5 C -0.403 4.403 6 H 0.065 0.935 7 C -0.219 4.219 8 N -0.551 5.551 9 Si 0.774 3.226 10 H -0.216 1.216 11 H -0.212 1.212 12 H -0.195 1.195 13 C 0.024 3.976 14 C -0.002 4.002 15 N -0.359 5.359 16 C 0.325 3.675 17 O -0.471 6.471 18 C -0.201 4.201 19 H 0.183 0.817 20 C -0.154 4.154 21 C -0.067 4.067 22 C -0.112 4.112 23 C -0.110 4.110 24 C -0.097 4.097 25 C -0.132 4.132 26 C -0.140 4.140 27 C -0.164 4.164 28 C -0.148 4.148 29 C -0.086 4.086 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.041 0.959 42 H 0.245 0.755 43 H 0.096 0.904 44 H 0.166 0.834 45 H 0.132 0.868 46 H 0.106 0.894 47 H 0.114 0.886 48 H 0.118 0.882 49 H 0.169 0.831 50 H 0.159 0.841 51 H 0.126 0.874 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.584 -5.106 -16.863 19.182 hybrid contribution 0.345 -0.093 1.704 1.741 sum 7.929 -5.199 -15.159 17.879 Atomic orbital electron populations 1.21651 0.94118 1.01785 1.02061 1.22010 0.96535 0.98814 1.00063 1.21043 0.83366 0.94417 0.99028 1.43772 1.00808 1.85233 1.01852 1.19081 1.09506 1.16103 0.95607 0.93521 1.25831 1.02033 0.94393 0.99665 1.70060 1.28111 1.13784 1.43143 0.85616 0.79694 0.77294 0.80008 1.21632 1.21179 1.19515 1.20835 0.98696 0.91682 0.86367 1.21872 0.94028 1.00814 0.83524 1.45938 1.57154 1.09565 1.23229 1.20265 0.78053 0.83517 0.85629 1.90647 1.56899 1.28249 1.71324 1.22403 0.94596 1.06464 0.96655 0.81699 1.23130 0.98386 0.91144 1.02727 1.20626 0.89250 1.02576 0.94220 1.21973 0.91423 0.99032 0.98814 1.21138 0.98108 1.02984 0.88761 1.21045 0.92873 0.98255 0.97480 1.20938 1.00671 1.00165 0.91430 1.21321 0.95104 0.99084 0.98523 1.21169 0.94994 1.01874 0.98360 1.21016 0.99745 1.00468 0.93562 1.19960 0.95892 1.00029 0.92762 0.92288 0.92531 0.92000 0.93824 0.94483 0.94646 0.93254 0.93722 0.91566 0.93725 0.93474 0.95928 0.75490 0.90428 0.83367 0.86806 0.89404 0.88575 0.88218 0.83103 0.84067 0.87361 0.88294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 9.91 71.98 0.71 -3.24 16 2 C -0.13 -5.03 6.23 30.59 0.19 -4.84 16 3 C 0.15 6.22 5.72 86.38 0.49 6.71 16 4 N -0.60 -29.76 2.40 -702.01 -1.69 -31.45 16 5 C -0.27 -15.15 9.43 84.03 0.79 -14.36 16 6 H 0.05 2.66 7.89 -2.91 -0.02 2.64 16 7 C -0.02 -1.14 5.00 84.86 0.42 -0.72 16 8 N -0.91 -52.05 11.58 21.65 0.25 -51.80 16 9 Si 0.95 45.44 29.59 68.60 2.03 47.47 16 10 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 12 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 13 C 0.15 6.95 5.44 86.38 0.47 7.42 16 14 C 0.12 5.32 6.00 86.38 0.52 5.83 16 15 N -0.71 -24.82 5.56 -463.03 -2.57 -27.39 16 16 C 0.54 18.51 5.18 87.66 0.45 18.97 16 17 O -0.59 -25.34 14.98 -3.03 -0.05 -25.38 16 18 C -0.18 -4.25 6.06 -11.71 -0.07 -4.32 16 19 H 0.17 2.65 8.14 -2.39 -0.02 2.63 16 20 C -0.12 -2.45 9.78 30.48 0.30 -2.15 16 21 C -0.07 -1.45 2.34 -52.98 -0.12 -1.58 16 22 C -0.08 -1.02 6.85 31.36 0.21 -0.80 16 23 C -0.07 -1.07 6.77 30.58 0.21 -0.86 16 24 C -0.10 -2.32 6.14 -19.55 -0.12 -2.44 16 25 C -0.11 -2.75 10.03 22.29 0.22 -2.52 16 26 C -0.12 -3.47 10.05 22.24 0.22 -3.24 16 27 C -0.15 -5.13 10.04 22.24 0.22 -4.91 16 28 C -0.13 -4.79 9.25 22.30 0.21 -4.58 16 29 C -0.09 -2.54 5.80 -19.73 -0.11 -2.66 16 30 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 33 H 0.04 1.69 6.65 -2.39 -0.02 1.67 16 34 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.04 1.55 8.08 -2.39 -0.02 1.53 16 36 H 0.05 1.91 7.83 -2.38 -0.02 1.90 16 37 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 38 H 0.07 3.46 5.71 -2.39 -0.01 3.45 16 39 H 0.04 1.87 7.86 -2.39 -0.02 1.86 16 40 H 0.05 2.05 6.65 -2.39 -0.02 2.04 16 41 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.41 12.26 8.47 -92.71 -0.79 11.47 16 43 H 0.08 2.13 7.78 -2.39 -0.02 2.11 16 44 H 0.15 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.11 0.83 8.12 -2.38 -0.02 0.81 16 46 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 50 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 51 H 0.11 3.90 8.06 -2.91 -0.02 3.88 16 52 H 0.10 4.25 4.85 -2.91 -0.01 4.23 16 Total: -1.00 -72.61 415.24 3.32 -69.28 By element: Atomic # 1 Polarization: 33.44 SS G_CDS: 0.12 Total: 33.57 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: 5.22 Total: -14.30 kcal Atomic # 7 Polarization: -106.63 SS G_CDS: -4.01 Total: -110.64 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.05 Total: -25.38 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -72.61 3.32 -69.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663688285.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.645 kcal (2) G-P(sol) polarization free energy of solvation -72.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds