Wall clock time and date at job start Wed Apr 1 2020 02:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46921 * 2 1 4 4 C 1.52998 * 109.47020 * 119.99860 * 2 1 3 5 5 H 1.09003 * 109.47224 * 303.59828 * 4 2 1 6 6 F 1.39902 * 109.47031 * 183.60254 * 4 2 1 7 7 C 1.50701 * 109.47426 * 63.60359 * 4 2 1 8 8 O 1.21283 * 119.99591 * 46.23552 * 7 4 2 9 9 N 1.34779 * 119.99852 * 226.52001 * 7 4 2 10 10 C 1.46500 * 119.99642 * 179.71970 * 9 7 4 11 11 C 1.53002 * 109.46968 * 180.02562 * 10 9 7 12 12 H 1.08999 * 110.32719 * 60.78383 * 11 10 9 13 13 C 1.54605 * 110.36880 * 183.14549 * 11 10 9 14 14 C 1.53984 * 103.88563 * 142.70804 * 13 11 10 15 15 C 1.53974 * 104.57636 * 359.87725 * 14 13 11 16 16 O 1.44470 * 110.36533 * 298.54955 * 11 10 9 17 17 C 1.52405 * 110.29111 * 118.40714 * 14 13 11 18 18 C 1.53295 * 109.39607 * 182.43783 * 17 14 13 19 19 N 1.46928 * 108.72153 * 306.32084 * 18 17 14 20 20 C 1.36929 * 120.57138 * 234.16115 * 19 18 17 21 21 H 1.08003 * 120.00291 * 29.85205 * 20 19 18 22 22 C 1.38811 * 120.00215 * 209.85209 * 20 19 18 23 23 N 1.31620 * 119.99922 * 14.08252 * 22 20 19 24 24 Si 1.86802 * 120.00157 * 194.08196 * 22 20 19 25 25 H 1.48497 * 109.46903 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46892 * 120.00234 * 24 22 20 27 27 H 1.48499 * 109.47288 * 239.99954 * 24 22 20 28 28 C 1.46938 * 118.85439 * 54.14016 * 19 18 17 29 29 C 1.52404 * 110.27431 * 241.36544 * 14 13 11 30 30 H 1.09000 * 109.47082 * 299.99769 * 1 2 3 31 31 H 1.08994 * 109.47028 * 60.00358 * 1 2 3 32 32 H 1.08997 * 109.46602 * 179.97438 * 1 2 3 33 33 H 1.08992 * 109.47605 * 239.99886 * 2 1 3 34 34 H 1.08995 * 109.46951 * 185.07778 * 3 2 1 35 35 H 1.08997 * 109.47081 * 305.08277 * 3 2 1 36 36 H 1.09003 * 109.46829 * 65.08414 * 3 2 1 37 37 H 0.96997 * 119.99947 * 359.72067 * 9 7 4 38 38 H 1.09000 * 109.47436 * 300.00135 * 10 9 7 39 39 H 1.08999 * 109.46725 * 60.00337 * 10 9 7 40 40 H 1.08997 * 110.54442 * 261.30863 * 13 11 10 41 41 H 1.09004 * 110.54206 * 24.10503 * 13 11 10 42 42 H 1.08999 * 110.39027 * 217.55319 * 15 14 13 43 43 H 1.09007 * 110.49206 * 95.21916 * 15 14 13 44 44 H 1.09005 * 109.48395 * 302.41297 * 17 14 13 45 45 H 1.08998 * 109.48516 * 62.45952 * 17 14 13 46 46 H 1.09000 * 109.59922 * 186.54474 * 18 17 14 47 47 H 1.09008 * 109.71745 * 66.16486 * 18 17 14 48 48 H 0.96999 * 119.99805 * 180.02562 * 23 22 20 49 49 H 1.09007 * 109.58973 * 186.08012 * 28 19 18 50 50 H 1.09002 * 109.72479 * 65.69635 * 28 19 18 51 51 H 1.09003 * 109.48844 * 297.51317 * 29 14 13 52 52 H 1.08999 * 109.48890 * 57.56408 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6249 -0.2459 2.1381 6 9 3.4366 -0.6499 1.2914 7 6 1.6119 -2.1655 1.2055 8 8 1.7505 -2.8084 0.1865 9 7 1.0699 -2.7410 2.2971 10 6 0.6481 -4.1433 2.2526 11 6 0.0705 -4.5454 3.6111 12 1 -0.7983 -3.9321 3.8497 13 6 -0.3090 -6.0442 3.6122 14 6 0.0612 -6.5181 5.0297 15 6 0.6227 -5.2635 5.7235 16 8 1.0746 -4.4176 4.6420 17 6 -1.1797 -7.0152 5.7617 18 6 -0.7990 -7.4244 7.1892 19 7 0.3103 -8.3857 7.1242 20 6 0.2138 -9.6034 7.7430 21 1 -0.7505 -10.0762 7.8574 22 6 1.3553 -10.2303 8.2234 23 7 2.4783 -9.5536 8.3396 24 14 1.2978 -12.0342 8.7051 25 1 -0.0717 -12.5629 8.4811 26 1 2.2647 -12.7987 7.8770 27 1 1.6548 -12.1751 10.1397 28 6 1.5248 -8.0181 6.3833 29 6 1.1274 -7.6050 4.9615 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 3.1261 1.4439 -0.0910 35 1 1.6042 1.9820 -0.8409 36 1 1.7529 1.9294 0.9321 37 1 0.9590 -2.2268 3.1120 38 1 -0.1132 -4.2695 1.4828 39 1 1.5067 -4.7737 2.0214 40 1 -1.3772 -6.1684 3.4341 41 1 0.2700 -6.5859 2.8642 42 1 1.4575 -5.5296 6.3719 43 1 -0.1577 -4.7629 6.2967 44 1 -1.9237 -6.2194 5.7979 45 1 -1.5925 -7.8755 5.2348 46 1 -1.6562 -7.8878 7.6776 47 1 -0.4881 -6.5450 7.7533 48 1 3.2760 -9.9918 8.6749 49 1 2.1997 -8.8730 6.3405 50 1 2.0212 -7.1849 6.8809 51 1 0.7316 -8.4698 4.4289 52 1 2.0026 -7.2234 4.4358 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671442913.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:06 Heat of formation + Delta-G solvation = -148.286675 kcal Electronic energy + Delta-G solvation = -31027.208639 eV Core-core repulsion = 26747.044404 eV Total energy + Delta-G solvation = -4280.164235 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -48.97266 -41.51216 -40.67800 -38.31099 -36.53823 -35.96393 -35.03559 -32.95131 -31.97084 -31.54010 -29.26793 -28.10620 -27.88692 -26.32315 -25.77737 -23.95806 -23.05481 -22.32862 -21.95086 -21.09282 -19.91813 -18.96253 -18.52785 -17.85468 -17.47313 -17.00072 -16.71076 -16.59885 -16.49206 -16.18327 -15.68134 -15.52085 -15.45374 -15.13824 -14.87774 -14.80983 -14.58886 -14.01334 -13.93158 -13.75871 -13.64742 -13.49770 -13.38613 -13.30056 -13.02557 -13.02072 -12.80856 -12.60128 -12.47245 -12.40913 -12.11536 -12.07840 -12.02721 -11.87237 -11.82558 -11.62622 -11.50651 -11.07310 -11.05786 -10.84558 -10.63754 -10.52218 -10.26845 -8.62887 -7.86895 -5.34981 1.28116 1.44198 1.46319 1.56311 1.87449 2.50000 2.85322 3.27333 3.29488 3.47020 3.52288 3.64820 3.70650 3.76035 3.81389 3.89446 4.03474 4.12363 4.17762 4.26010 4.37598 4.46119 4.51887 4.53318 4.57427 4.66176 4.70847 4.75124 4.78014 4.82384 4.84799 4.89547 4.94943 4.96771 5.01472 5.05095 5.14750 5.17409 5.24445 5.29401 5.33543 5.35629 5.37108 5.42246 5.53334 5.64960 5.78651 5.90331 6.31594 6.40796 6.98262 7.15861 7.87793 8.38895 9.18522 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.028569 B = 0.002001 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.833384 B =13991.822202 C =14328.829069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C -0.145 4.145 4 C 0.084 3.916 5 H 0.137 0.863 6 F -0.205 7.205 7 C 0.490 3.510 8 O -0.567 6.567 9 N -0.703 5.703 10 C 0.128 3.872 11 C 0.069 3.931 12 H 0.104 0.896 13 C -0.133 4.133 14 C -0.074 4.074 15 C 0.061 3.939 16 O -0.386 6.386 17 C -0.107 4.107 18 C 0.137 3.863 19 N -0.609 5.609 20 C -0.258 4.258 21 H 0.066 0.934 22 C -0.053 4.053 23 N -0.936 5.936 24 Si 0.965 3.035 25 H -0.265 1.265 26 H -0.293 1.293 27 H -0.292 1.292 28 C 0.178 3.822 29 C -0.114 4.114 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.419 0.581 38 H 0.096 0.904 39 H 0.054 0.946 40 H 0.104 0.896 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.091 0.909 45 H 0.058 0.942 46 H 0.053 0.947 47 H 0.018 0.982 48 H 0.248 0.752 49 H 0.046 0.954 50 H 0.000 1.000 51 H 0.050 0.950 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.932 21.987 -14.527 27.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.133 4.133 3 C -0.202 4.202 4 C 0.045 3.955 5 H 0.155 0.845 6 F -0.186 7.186 7 C 0.274 3.726 8 O -0.446 6.446 9 N -0.355 5.355 10 C 0.004 3.996 11 C 0.011 3.989 12 H 0.122 0.878 13 C -0.171 4.171 14 C -0.075 4.075 15 C -0.016 4.016 16 O -0.306 6.306 17 C -0.146 4.146 18 C 0.012 3.988 19 N -0.333 5.333 20 C -0.389 4.389 21 H 0.084 0.916 22 C -0.249 4.249 23 N -0.582 5.582 24 Si 0.794 3.206 25 H -0.189 1.189 26 H -0.220 1.220 27 H -0.219 1.219 28 C 0.052 3.948 29 C -0.153 4.153 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.256 0.744 38 H 0.114 0.886 39 H 0.072 0.928 40 H 0.123 0.877 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.109 0.891 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.036 0.964 48 H 0.057 0.943 49 H 0.065 0.935 50 H 0.018 0.982 51 H 0.069 0.931 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.489 21.586 -15.173 27.717 hybrid contribution 0.758 -1.465 0.996 1.927 sum -7.730 20.120 -14.177 25.799 Atomic orbital electron populations 1.21797 0.92165 1.01957 1.04281 1.21605 0.98317 0.97668 0.95664 1.21813 1.01210 0.93300 1.03845 1.21979 0.76693 0.92461 1.04381 0.84518 1.92854 1.30758 1.96954 1.97997 1.21403 0.77602 0.90241 0.83330 1.90715 1.55421 1.65722 1.32739 1.45926 1.61708 1.13122 1.14724 1.21515 1.00062 0.81550 0.96478 1.23337 0.91621 0.96812 0.87094 0.87820 1.22987 1.03659 0.94506 0.95967 1.21273 0.95857 0.95007 0.95340 1.23470 0.99456 0.89104 0.89533 1.89124 1.46390 1.67377 1.27692 1.21877 0.95831 1.00901 0.95944 1.21140 0.90485 0.91805 0.95391 1.44268 1.15033 1.14882 1.59087 1.19541 0.93730 0.95412 1.30190 0.91608 1.25854 0.96833 1.02500 0.99667 1.70168 1.01422 1.36027 1.50630 0.85232 0.77795 0.80649 0.76938 1.18931 1.21990 1.21947 1.20597 0.88520 0.96979 0.88654 1.21928 0.97809 0.97578 0.98015 0.89964 0.90512 0.93764 0.91301 0.92955 0.90514 0.90621 0.74398 0.88574 0.92801 0.87729 0.90835 0.91201 0.90565 0.89086 0.92277 0.92864 0.96421 0.94258 0.93514 0.98227 0.93110 0.92823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.99 71.98 0.65 -0.80 16 2 C -0.11 -1.56 2.60 -10.79 -0.03 -1.59 16 3 C -0.14 -1.43 8.97 71.98 0.65 -0.79 16 4 C 0.08 1.33 3.36 29.85 0.10 1.44 16 5 H 0.14 1.10 7.98 -2.39 -0.02 1.08 16 6 F -0.20 -4.51 16.51 44.97 0.74 -3.76 16 7 C 0.49 10.55 6.07 87.66 0.53 11.08 16 8 O -0.57 -17.08 16.48 -3.04 -0.05 -17.13 16 9 N -0.70 -12.41 5.48 -463.05 -2.54 -14.95 16 10 C 0.13 2.49 5.31 86.38 0.46 2.95 16 11 C 0.07 1.30 3.37 31.14 0.10 1.40 16 12 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 13 C -0.13 -2.82 5.90 31.47 0.19 -2.63 16 14 C -0.07 -2.13 0.68 -51.91 -0.04 -2.17 16 15 C 0.06 1.73 5.63 72.31 0.41 2.14 16 16 O -0.39 -10.04 11.20 -148.98 -1.67 -11.71 16 17 C -0.11 -3.06 4.55 30.50 0.14 -2.92 16 18 C 0.14 5.26 6.22 86.40 0.54 5.79 16 19 N -0.61 -29.81 2.98 -698.64 -2.08 -31.89 16 20 C -0.26 -14.07 9.58 84.03 0.80 -13.26 16 21 H 0.07 3.49 7.87 -2.91 -0.02 3.47 16 22 C -0.05 -2.99 4.98 84.86 0.42 -2.57 16 23 N -0.94 -55.83 11.13 21.65 0.24 -55.59 16 24 Si 0.97 45.09 29.58 68.60 2.03 47.12 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 26 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 27 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 28 C 0.18 8.55 4.98 86.39 0.43 8.98 16 29 C -0.11 -4.25 4.69 30.50 0.14 -4.11 16 30 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.04 0.59 7.33 -2.39 -0.02 0.57 16 33 H 0.07 1.30 7.80 -2.39 -0.02 1.28 16 34 H 0.05 0.64 7.87 -2.39 -0.02 0.63 16 35 H 0.08 0.58 8.14 -2.39 -0.02 0.57 16 36 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.42 5.33 8.30 -92.71 -0.77 4.56 16 38 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.05 1.35 8.13 -2.39 -0.02 1.33 16 40 H 0.10 1.71 7.71 -2.39 -0.02 1.69 16 41 H 0.07 1.66 7.43 -2.38 -0.02 1.64 16 42 H 0.07 2.47 5.99 -2.39 -0.01 2.46 16 43 H 0.08 1.88 7.71 -2.38 -0.02 1.86 16 44 H 0.09 1.95 8.12 -2.38 -0.02 1.93 16 45 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.05 2.02 7.93 -2.39 -0.02 2.00 16 47 H 0.02 0.68 7.46 -2.38 -0.02 0.67 16 48 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 49 H 0.05 2.61 6.06 -2.38 -0.01 2.59 16 50 H 0.00 -0.01 6.44 -2.39 -0.02 -0.03 16 51 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 52 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -72.20 402.28 2.30 -69.89 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.13 Total: 15.08 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: 5.49 Total: 2.94 kcal Atomic # 7 Polarization: -98.05 SS G_CDS: -4.38 Total: -102.42 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -1.72 Total: -28.84 kcal Atomic # 9 Polarization: -4.51 SS G_CDS: 0.74 Total: -3.76 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -72.20 2.30 -69.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671442913.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.392 kcal (2) G-P(sol) polarization free energy of solvation -72.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds