Wall clock time and date at job start Wed Apr 1 2020 02:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46968 * 2 1 4 4 C 1.53002 * 109.47155 * 120.00171 * 2 1 3 5 5 H 1.08999 * 109.46955 * 185.00104 * 4 2 1 6 6 F 1.39901 * 109.47057 * 305.00026 * 4 2 1 7 7 C 1.50696 * 109.47068 * 65.00056 * 4 2 1 8 8 O 1.21283 * 120.00092 * 315.00067 * 7 4 2 9 9 N 1.34773 * 119.99941 * 135.00157 * 7 4 2 10 10 C 1.46496 * 120.00169 * 180.02562 * 9 7 4 11 11 C 1.53001 * 109.47602 * 180.02562 * 10 9 7 12 12 H 1.08996 * 110.32966 * 57.75440 * 11 10 9 13 13 C 1.54607 * 110.36961 * 180.02562 * 11 10 9 14 14 C 1.53994 * 103.88350 * 142.71625 * 13 11 10 15 15 C 1.53971 * 104.57648 * 359.86395 * 14 13 11 16 16 O 1.44479 * 110.36301 * 295.40045 * 11 10 9 17 17 C 1.52396 * 110.27064 * 118.41205 * 14 13 11 18 18 C 1.53292 * 109.42259 * 62.65353 * 17 14 13 19 19 N 1.46927 * 108.72581 * 53.66873 * 18 17 14 20 20 C 1.36944 * 120.57827 * 125.82894 * 19 18 17 21 21 H 1.07993 * 120.00017 * 332.05044 * 20 19 18 22 22 C 1.38814 * 119.99657 * 152.06163 * 20 19 18 23 23 N 1.31620 * 120.00017 * 144.16037 * 22 20 19 24 24 Si 1.86795 * 119.99756 * 324.15582 * 22 20 19 25 25 H 1.48498 * 109.47372 * 270.00145 * 24 22 20 26 26 H 1.48502 * 109.47511 * 30.00591 * 24 22 20 27 27 H 1.48508 * 109.47217 * 150.00345 * 24 22 20 28 28 C 1.46927 * 118.83558 * 306.10573 * 19 18 17 29 29 C 1.52413 * 110.24858 * 241.34878 * 14 13 11 30 30 H 1.09001 * 109.46890 * 299.99716 * 1 2 3 31 31 H 1.08999 * 109.47318 * 59.99709 * 1 2 3 32 32 H 1.08993 * 109.46967 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46890 * 240.00284 * 2 1 3 34 34 H 1.09006 * 109.47189 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47338 * 300.00278 * 3 2 1 36 36 H 1.09001 * 109.47083 * 60.00403 * 3 2 1 37 37 H 0.97006 * 120.00116 * 359.97438 * 9 7 4 38 38 H 1.09003 * 109.47538 * 59.99334 * 10 9 7 39 39 H 1.09006 * 109.47381 * 299.99947 * 10 9 7 40 40 H 1.08999 * 110.54615 * 24.10963 * 13 11 10 41 41 H 1.09001 * 110.53812 * 261.31126 * 13 11 10 42 42 H 1.09004 * 110.39188 * 95.17982 * 15 14 13 43 43 H 1.09000 * 110.39004 * 217.56474 * 15 14 13 44 44 H 1.09000 * 109.48053 * 302.66876 * 17 14 13 45 45 H 1.09005 * 109.48713 * 182.63589 * 17 14 13 46 46 H 1.09000 * 109.59271 * 293.89973 * 18 17 14 47 47 H 1.09003 * 109.72558 * 173.52355 * 18 17 14 48 48 H 0.96996 * 120.00040 * 354.93497 * 23 22 20 49 49 H 1.09003 * 109.59878 * 173.67894 * 28 19 18 50 50 H 1.09005 * 109.59347 * 294.13950 * 28 19 18 51 51 H 1.09000 * 109.48022 * 57.32958 * 29 14 13 52 52 H 1.09003 * 109.48163 * 177.36431 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1263 -0.6443 1.2951 6 9 1.4822 -0.1315 2.3886 7 6 1.6414 -2.1733 1.1888 8 8 0.5143 -2.4796 0.8620 9 7 2.5373 -3.1315 1.4979 10 6 2.1500 -4.5431 1.4387 11 6 3.3424 -5.4163 1.8344 12 1 3.6911 -5.1513 2.8325 13 6 2.9560 -6.9123 1.7782 14 6 4.2247 -7.6017 1.2427 15 6 5.2297 -6.4544 1.0324 16 8 4.4106 -5.2745 0.8720 17 6 4.7607 -8.5921 2.2695 18 6 3.7209 -9.6930 2.5070 19 7 3.3517 -10.2805 1.2119 20 6 3.4426 -11.6317 1.0086 21 1 4.1646 -12.2137 1.5621 22 6 2.6069 -12.2532 0.0909 23 7 3.0541 -13.2591 -0.6307 24 14 0.8475 -11.6621 -0.1199 25 1 -0.0387 -12.4022 0.8140 26 1 0.7748 -10.2086 0.1758 27 1 0.4076 -11.9055 -1.5173 28 6 2.8891 -9.3922 0.1369 29 6 3.9293 -8.2943 -0.0824 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 3.4389 -2.8865 1.7590 38 1 1.8376 -4.7920 0.4245 39 1 1.3243 -4.7226 2.1274 40 1 2.1200 -7.0661 1.0959 41 1 2.7113 -7.2817 2.7741 42 1 5.8772 -6.3522 1.9033 43 1 5.8234 -6.6293 0.1352 44 1 4.9600 -8.0721 3.2065 45 1 5.6833 -9.0378 1.8976 46 1 2.8368 -9.2650 2.9795 47 1 4.1424 -10.4644 3.1516 48 1 3.9870 -13.5188 -0.5750 49 1 2.7647 -9.9647 -0.7824 50 1 1.9386 -8.9399 0.4200 51 1 3.5453 -7.5653 -0.7959 52 1 4.8452 -8.7378 -0.4729 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671442915.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:12 Heat of formation + Delta-G solvation = -139.794850 kcal Electronic energy + Delta-G solvation = -31267.958801 eV Core-core repulsion = 26988.162799 eV Total energy + Delta-G solvation = -4279.796002 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -48.95088 -41.56659 -40.67153 -38.47541 -36.47508 -35.86971 -35.12357 -33.08544 -32.09346 -31.98426 -29.22224 -28.28785 -28.03627 -26.37120 -25.08110 -24.31739 -22.73256 -22.44113 -22.17723 -21.08671 -20.11161 -18.98513 -18.80053 -18.10988 -17.41809 -16.99817 -16.78422 -16.51518 -16.29917 -16.17295 -16.13832 -15.54930 -15.34524 -15.27421 -15.05788 -14.75669 -14.65622 -14.31992 -14.21767 -13.83377 -13.73613 -13.61902 -13.31467 -13.24691 -13.12768 -12.95711 -12.93503 -12.45300 -12.38437 -12.24907 -12.18588 -12.10664 -11.89775 -11.70998 -11.70086 -11.62805 -11.33753 -11.16502 -11.04992 -10.64013 -10.57609 -10.40159 -10.23456 -8.98318 -8.56915 -5.42259 1.31467 1.50494 1.54381 1.73147 1.88173 2.58567 2.83376 2.95588 3.34156 3.46086 3.49954 3.52027 3.66832 3.72167 3.80186 3.84552 3.98898 4.10337 4.19974 4.25724 4.35622 4.38739 4.44381 4.53914 4.56674 4.57212 4.65247 4.70317 4.77636 4.79104 4.81416 4.84291 4.93101 4.98025 4.99252 5.02612 5.05056 5.11603 5.18842 5.22892 5.25258 5.25954 5.28125 5.37205 5.54089 5.56884 5.84987 5.86798 6.28601 6.34751 6.92112 7.04513 7.66767 8.15982 8.79409 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.019224 B = 0.002333 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.142145 B =11997.818638 C =12747.833265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.111 4.111 3 C -0.145 4.145 4 C 0.088 3.912 5 H 0.138 0.862 6 F -0.200 7.200 7 C 0.486 3.514 8 O -0.556 6.556 9 N -0.703 5.703 10 C 0.127 3.873 11 C 0.075 3.925 12 H 0.100 0.900 13 C -0.138 4.138 14 C -0.076 4.076 15 C 0.062 3.938 16 O -0.379 6.379 17 C -0.110 4.110 18 C 0.138 3.862 19 N -0.612 5.612 20 C -0.346 4.346 21 H 0.028 0.972 22 C -0.050 4.050 23 N -0.938 5.938 24 Si 1.060 2.940 25 H -0.297 1.297 26 H -0.237 1.237 27 H -0.301 1.301 28 C 0.140 3.860 29 C -0.114 4.114 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.419 0.581 38 H 0.062 0.938 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.048 0.952 46 H 0.038 0.962 47 H 0.043 0.957 48 H 0.252 0.748 49 H 0.035 0.965 50 H 0.040 0.960 51 H 0.070 0.930 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.454 30.529 5.785 31.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.130 4.130 3 C -0.202 4.202 4 C 0.049 3.951 5 H 0.156 0.844 6 F -0.181 7.181 7 C 0.270 3.730 8 O -0.434 6.434 9 N -0.355 5.355 10 C 0.003 3.997 11 C 0.018 3.982 12 H 0.118 0.882 13 C -0.177 4.177 14 C -0.076 4.076 15 C -0.015 4.015 16 O -0.298 6.298 17 C -0.148 4.148 18 C 0.013 3.987 19 N -0.337 5.337 20 C -0.475 4.475 21 H 0.045 0.955 22 C -0.248 4.248 23 N -0.578 5.578 24 Si 0.885 3.115 25 H -0.225 1.225 26 H -0.161 1.161 27 H -0.229 1.229 28 C 0.015 3.985 29 C -0.153 4.153 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.257 0.743 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.110 0.890 42 H 0.100 0.900 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.067 0.933 46 H 0.056 0.944 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.053 0.947 50 H 0.058 0.942 51 H 0.089 0.911 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.287 30.172 4.682 30.560 hybrid contribution 1.751 -1.008 0.842 2.189 sum 3.039 29.164 5.524 29.838 Atomic orbital electron populations 1.22068 0.94786 1.03623 1.01726 1.21602 0.97374 0.98161 0.95891 1.21835 1.02058 0.93383 1.02907 1.21816 1.01180 0.87607 0.84528 0.84420 1.92846 1.88031 1.84572 1.52606 1.21468 0.85281 0.89123 0.77084 1.90652 1.21593 1.83662 1.47528 1.45927 1.15833 1.05874 1.67859 1.21460 0.96418 0.79429 1.02398 1.23236 0.87227 0.94028 0.93758 0.88191 1.23007 0.97887 0.93701 1.03061 1.21291 0.95642 0.95417 0.95278 1.23498 0.92761 0.82475 1.02752 1.89105 1.39697 1.41966 1.59067 1.21823 0.98167 0.96141 0.98704 1.21176 0.96146 0.94610 0.86763 1.44384 1.78222 1.02053 1.09076 1.19888 1.16769 0.85357 1.25479 0.95459 1.27144 1.06844 0.95986 0.94823 1.70998 1.17126 1.33483 1.36202 0.84064 0.73827 0.78315 0.75263 1.22525 1.16078 1.22855 1.21325 0.95528 0.91141 0.90488 1.21821 0.99402 0.97295 0.96800 0.93258 0.91741 0.91403 0.88753 0.90564 0.91084 0.92482 0.74339 0.91995 0.89793 0.91201 0.88957 0.90045 0.89178 0.89060 0.93282 0.94390 0.93869 0.93876 0.94673 0.94220 0.91129 0.93502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 8.71 71.98 0.63 -2.37 16 2 C -0.11 -1.50 2.75 -10.79 -0.03 -1.53 16 3 C -0.14 -1.33 9.11 71.98 0.66 -0.68 16 4 C 0.09 1.20 3.46 29.85 0.10 1.31 16 5 H 0.14 0.80 7.99 -2.39 -0.02 0.78 16 6 F -0.20 -3.62 16.03 44.97 0.72 -2.90 16 7 C 0.49 9.41 7.17 87.66 0.63 10.03 16 8 O -0.56 -15.40 13.80 -3.04 -0.04 -15.45 16 9 N -0.70 -10.83 5.52 -463.06 -2.56 -13.39 16 10 C 0.13 2.34 5.29 86.38 0.46 2.80 16 11 C 0.08 1.27 3.34 31.14 0.10 1.38 16 12 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 13 C -0.14 -3.03 4.97 31.48 0.16 -2.87 16 14 C -0.08 -1.89 0.68 -51.91 -0.04 -1.93 16 15 C 0.06 1.22 6.72 72.31 0.49 1.71 16 16 O -0.38 -7.48 11.31 -148.98 -1.68 -9.17 16 17 C -0.11 -2.97 4.64 30.49 0.14 -2.82 16 18 C 0.14 4.96 6.21 86.40 0.54 5.49 16 19 N -0.61 -27.92 2.70 -699.60 -1.89 -29.81 16 20 C -0.35 -19.43 9.70 84.03 0.82 -18.61 16 21 H 0.03 1.70 8.06 -2.91 -0.02 1.67 16 22 C -0.05 -2.93 4.82 84.86 0.41 -2.52 16 23 N -0.94 -59.30 13.70 21.65 0.30 -59.00 16 24 Si 1.06 51.51 26.99 68.60 1.85 53.37 16 25 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 26 H -0.24 -10.08 4.73 99.48 0.47 -9.61 16 27 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 28 C 0.14 5.73 4.03 86.24 0.35 6.08 16 29 C -0.11 -3.68 4.61 30.34 0.14 -3.54 16 30 H 0.05 0.94 7.68 -2.39 -0.02 0.92 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 1.63 5.25 -2.39 -0.01 1.61 16 33 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 0.44 8.14 -2.38 -0.02 0.42 16 35 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.06 0.60 7.94 -2.39 -0.02 0.58 16 37 H 0.42 4.06 8.37 -92.70 -0.78 3.29 16 38 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 40 H 0.07 1.74 6.33 -2.39 -0.02 1.73 16 41 H 0.09 1.88 6.58 -2.39 -0.02 1.87 16 42 H 0.08 1.29 7.83 -2.38 -0.02 1.27 16 43 H 0.09 1.84 7.85 -2.39 -0.02 1.82 16 44 H 0.09 1.84 8.13 -2.39 -0.02 1.82 16 45 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 46 H 0.04 1.25 6.85 -2.39 -0.02 1.24 16 47 H 0.04 1.65 7.93 -2.39 -0.02 1.63 16 48 H 0.25 16.05 8.73 -92.71 -0.81 15.24 16 49 H 0.03 1.63 5.79 -2.39 -0.01 1.62 16 50 H 0.04 1.56 5.34 -2.38 -0.01 1.54 16 51 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 52 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -72.92 393.25 2.10 -70.82 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -0.14 Total: 13.60 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: 5.54 Total: -8.08 kcal Atomic # 7 Polarization: -98.04 SS G_CDS: -4.15 Total: -102.19 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -1.73 Total: -24.61 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.72 Total: -2.90 kcal Atomic # 14 Polarization: 51.51 SS G_CDS: 1.85 Total: 53.37 kcal Total: -72.92 2.10 -70.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671442915.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.974 kcal (2) G-P(sol) polarization free energy of solvation -72.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds