Wall clock time and date at job start Wed Apr 1 2020 01:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47084 * 2 1 4 4 C 1.53008 * 109.46904 * 240.00273 * 2 1 3 5 5 C 1.53003 * 109.47384 * 120.00403 * 2 1 3 6 6 H 1.09004 * 109.46753 * 304.93674 * 5 2 1 7 7 N 1.46506 * 109.46886 * 64.93340 * 5 2 1 8 8 C 1.34780 * 119.99952 * 274.99983 * 7 5 2 9 9 N 1.34770 * 119.99596 * 180.02562 * 8 7 5 10 10 O 1.21588 * 120.00131 * 0.02562 * 8 7 5 11 11 C 1.50696 * 109.47171 * 184.93235 * 5 2 1 12 12 O 1.21279 * 120.00494 * 268.08312 * 11 5 2 13 13 N 1.34779 * 119.99478 * 88.08311 * 11 5 2 14 14 C 1.46506 * 119.99765 * 175.41020 * 13 11 5 15 15 C 1.53006 * 112.94235 * 295.42732 * 14 13 11 16 16 C 1.52995 * 109.47242 * 302.29017 * 15 14 13 17 17 O 1.42900 * 109.47117 * 184.57697 * 16 15 14 18 18 C 1.53943 * 113.74225 * 163.83741 * 14 13 11 19 19 N 1.47805 * 86.03567 * 222.08056 * 18 14 13 20 20 C 1.36946 * 134.45889 * 204.64348 * 19 18 14 21 21 H 1.07993 * 120.00208 * 183.76849 * 20 19 18 22 22 C 1.38809 * 119.99416 * 3.76505 * 20 19 18 23 23 N 1.31619 * 120.00582 * 6.12499 * 22 20 19 24 24 Si 1.86808 * 119.99733 * 186.12429 * 22 20 19 25 25 H 1.48501 * 109.46740 * 94.97039 * 24 22 20 26 26 H 1.48497 * 109.47198 * 214.97041 * 24 22 20 27 27 H 1.48501 * 109.46917 * 334.97172 * 24 22 20 28 28 C 1.47578 * 91.05498 * 24.54884 * 19 18 14 29 29 H 1.09005 * 109.46626 * 299.99194 * 1 2 3 30 30 H 1.08997 * 109.47410 * 59.99244 * 1 2 3 31 31 H 1.09000 * 109.47363 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47222 * 185.82826 * 3 2 1 33 33 H 1.08998 * 109.47431 * 305.83115 * 3 2 1 34 34 H 1.09008 * 109.47256 * 65.83461 * 3 2 1 35 35 H 1.09000 * 109.46719 * 299.99916 * 4 2 1 36 36 H 1.08997 * 109.46692 * 60.00044 * 4 2 1 37 37 H 1.08990 * 109.46852 * 179.97438 * 4 2 1 38 38 H 0.96993 * 119.99990 * 95.00444 * 7 5 2 39 39 H 0.97000 * 120.00341 * 359.97438 * 9 8 7 40 40 H 0.97008 * 119.99623 * 180.02562 * 9 8 7 41 41 H 0.96998 * 120.00640 * 355.40386 * 13 11 5 42 42 H 1.09010 * 109.46524 * 62.28485 * 15 14 13 43 43 H 1.08992 * 109.47400 * 182.28511 * 15 14 13 44 44 H 1.09001 * 109.47114 * 304.57782 * 16 15 14 45 45 H 1.09004 * 109.47407 * 64.57306 * 16 15 14 46 46 H 0.96699 * 114.00075 * 179.97438 * 17 16 15 47 47 H 1.08993 * 113.77056 * 336.34846 * 18 14 13 48 48 H 1.09002 * 113.76694 * 107.74237 * 18 14 13 49 49 H 0.96996 * 119.99971 * 179.97438 * 23 22 20 50 50 H 1.08995 * 113.77451 * 221.15324 * 28 19 18 51 51 H 1.09003 * 113.76603 * 89.74982 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0401 -0.7213 1.2492 6 1 1.6063 -0.2611 2.1370 7 7 1.6512 -2.1326 1.1911 8 6 0.4337 -2.5145 1.6254 9 7 0.0762 -3.8129 1.5724 10 8 -0.3420 -1.6877 2.0648 11 6 3.5421 -0.6164 1.3117 12 8 4.2317 -1.4832 0.8178 13 7 4.1191 0.4408 1.9167 14 6 5.5755 0.4941 2.0665 15 6 6.1226 -0.6108 2.9727 16 6 5.4634 -0.5139 4.3500 17 8 6.0506 -1.4766 5.2278 18 6 6.1128 1.8963 2.4053 19 7 7.1896 1.6058 1.4353 20 6 8.4706 2.0573 1.2606 21 1 9.0509 1.7213 0.4140 22 6 9.0232 2.9469 2.1717 23 7 8.3634 3.2632 3.2658 24 14 10.7034 3.6952 1.8449 25 1 10.5373 5.0181 1.1910 26 1 11.4277 3.8657 3.1300 27 1 11.4806 2.7967 0.9540 28 6 6.3312 0.6325 0.7326 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 3.1250 1.4442 -0.1044 33 1 1.5939 1.9855 -0.8331 34 1 1.7645 1.9253 0.9377 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2073 -2.1392 37 1 3.1299 -0.7208 -1.2496 38 1 2.2698 -2.7921 0.8403 39 1 0.6949 -4.4724 1.2215 40 1 -0.8002 -4.0877 1.8846 41 1 3.5701 1.1665 2.2527 42 1 5.9031 -1.5836 2.5325 43 1 7.2012 -0.4942 3.0771 44 1 5.6139 0.4868 4.7552 45 1 4.3955 -0.7111 4.2564 46 1 5.6805 -1.4715 6.1211 47 1 5.4515 2.7063 2.0980 48 1 6.4612 1.9968 3.4332 49 1 8.7498 3.8846 3.9025 50 1 6.8536 -0.2741 0.4274 51 1 5.7341 1.0706 -0.0673 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675106038.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:50 Heat of formation + Delta-G solvation = -66.276079 kcal Electronic energy + Delta-G solvation = -32815.641351 eV Core-core repulsion = 28558.953324 eV Total energy + Delta-G solvation = -4256.688027 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.01616 -39.69744 -38.23206 -36.62037 -36.36355 -34.17718 -33.72234 -33.04531 -31.95731 -30.39735 -27.79742 -27.27145 -27.05134 -26.67454 -25.10122 -23.38820 -21.87625 -21.38991 -20.71507 -19.07595 -18.71874 -18.66494 -17.64931 -17.04503 -16.82674 -16.27344 -16.13566 -15.70134 -15.19489 -14.85904 -14.71481 -14.59689 -14.27313 -14.17434 -13.85600 -13.66519 -13.51932 -13.26460 -12.77500 -12.54437 -12.25393 -12.07457 -11.93127 -11.72342 -11.64843 -11.62792 -11.35382 -11.10785 -10.93550 -10.91655 -10.83095 -10.77257 -10.73322 -10.40436 -10.16730 -9.94440 -9.82882 -9.72114 -9.63675 -9.33627 -9.02824 -8.91908 -8.64821 -6.94101 -5.82049 -3.15206 2.48601 2.82529 3.04895 3.37192 3.41223 3.44855 3.46736 4.29560 4.41807 4.47415 4.62327 4.65116 4.79735 5.01198 5.16863 5.18743 5.26519 5.42283 5.45991 5.52231 5.61182 5.66413 5.73107 5.77436 5.80309 5.87826 5.92196 5.93296 6.03792 6.12545 6.23120 6.29318 6.31418 6.38215 6.41616 6.47805 6.51141 6.60869 6.71149 6.71821 6.80938 7.09607 7.27503 7.46777 7.71556 7.78850 7.90269 7.92769 8.38306 8.45154 8.98595 9.65537 10.50968 11.34050 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.016132 B = 0.003247 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.213767 B = 8622.137845 C = 9580.284581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.071 4.071 3 C -0.152 4.152 4 C -0.141 4.141 5 C 0.155 3.845 6 H 0.105 0.895 7 N -0.724 5.724 8 C 0.708 3.292 9 N -0.869 5.869 10 O -0.590 6.590 11 C 0.516 3.484 12 O -0.531 6.531 13 N -0.709 5.709 14 C 0.125 3.875 15 C -0.094 4.094 16 C 0.083 3.917 17 O -0.574 6.574 18 C 0.158 3.842 19 N -0.603 5.603 20 C -0.220 4.220 21 H 0.082 0.918 22 C -0.006 4.006 23 N -0.919 5.919 24 Si 0.912 3.088 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.130 3.870 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.406 0.594 39 H 0.397 0.603 40 H 0.414 0.586 41 H 0.398 0.602 42 H 0.071 0.929 43 H 0.092 0.908 44 H 0.051 0.949 45 H 0.033 0.967 46 H 0.372 0.628 47 H 0.029 0.971 48 H 0.089 0.911 49 H 0.254 0.746 50 H 0.051 0.949 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.511 -10.424 -2.511 20.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.210 4.210 4 C -0.198 4.198 5 C 0.045 3.955 6 H 0.123 0.877 7 N -0.381 5.381 8 C 0.406 3.594 9 N -0.437 5.437 10 O -0.469 6.469 11 C 0.300 3.700 12 O -0.407 6.407 13 N -0.360 5.360 14 C 0.039 3.961 15 C -0.132 4.132 16 C 0.005 3.995 17 O -0.379 6.379 18 C 0.032 3.968 19 N -0.330 5.330 20 C -0.348 4.348 21 H 0.099 0.901 22 C -0.202 4.202 23 N -0.566 5.566 24 Si 0.743 3.257 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.205 1.205 28 C 0.003 3.997 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.242 0.758 39 H 0.225 0.775 40 H 0.246 0.754 41 H 0.233 0.767 42 H 0.089 0.911 43 H 0.110 0.890 44 H 0.069 0.931 45 H 0.051 0.949 46 H 0.218 0.782 47 H 0.047 0.953 48 H 0.107 0.893 49 H 0.064 0.936 50 H 0.069 0.931 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -16.854 -10.178 -2.960 19.910 hybrid contribution 0.394 0.317 0.236 0.558 sum -16.460 -9.861 -2.724 19.380 Atomic orbital electron populations 1.21866 0.92919 1.02380 1.01344 1.20867 0.96866 0.95474 0.94109 1.22028 1.02081 0.94435 1.02448 1.21859 1.01903 0.99878 0.96191 1.20797 0.92112 0.82126 1.00455 0.87727 1.44767 1.16104 1.08983 1.68284 1.15834 0.82112 0.82953 0.78461 1.42969 1.21730 1.07260 1.71708 1.90977 1.52061 1.51023 1.52792 1.20362 0.89304 0.82304 0.78046 1.90676 1.64488 1.39999 1.45576 1.46288 1.08717 1.21877 1.59156 1.23006 0.76465 0.98605 0.98020 1.21311 1.02100 0.98006 0.91786 1.22122 0.95006 0.91432 0.90922 1.86492 1.65961 1.60349 1.25084 1.22701 0.87540 0.88666 0.97879 1.45643 1.08915 1.46682 1.31749 1.18990 0.86671 1.21684 1.07424 0.90052 1.24756 0.98650 1.00300 0.96529 1.69783 1.38312 1.37871 1.10590 0.86091 0.83310 0.79223 0.77107 1.21676 1.21672 1.20507 1.22783 0.91041 0.93118 0.92724 0.91994 0.93392 0.92349 0.91503 0.91829 0.92174 0.92749 0.92697 0.91717 0.75778 0.77519 0.75413 0.76720 0.91079 0.88954 0.93107 0.94871 0.78236 0.95324 0.89260 0.93608 0.93107 0.94634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 7.07 37.16 0.26 -1.12 16 2 C -0.07 -0.76 0.62 -154.51 -0.10 -0.86 16 3 C -0.15 -1.59 7.40 37.15 0.27 -1.32 16 4 C -0.14 -1.54 8.03 37.16 0.30 -1.24 16 5 C 0.15 1.78 1.94 -69.08 -0.13 1.65 16 6 H 0.10 1.24 7.58 -51.93 -0.39 0.85 16 7 N -0.72 -7.57 4.04 -59.81 -0.24 -7.81 16 8 C 0.71 7.60 7.40 -86.92 -0.64 6.96 16 9 N -0.87 -5.79 8.88 27.63 0.25 -5.55 16 10 O -0.59 -8.28 14.31 5.29 0.08 -8.20 16 11 C 0.52 7.05 5.00 -10.99 -0.05 7.00 16 12 O -0.53 -8.62 13.64 5.56 0.08 -8.55 16 13 N -0.71 -9.91 3.79 -49.08 -0.19 -10.10 16 14 C 0.13 2.25 0.66 -134.04 -0.09 2.16 16 15 C -0.09 -1.75 4.82 -26.73 -0.13 -1.88 16 16 C 0.08 1.34 6.80 37.16 0.25 1.59 16 17 O -0.57 -9.22 13.66 -35.23 -0.48 -9.70 16 18 C 0.16 3.42 6.83 -2.84 -0.02 3.40 16 19 N -0.60 -14.88 3.54 -177.54 -0.63 -15.51 16 20 C -0.22 -6.03 10.69 -15.06 -0.16 -6.19 16 21 H 0.08 2.18 7.84 -52.49 -0.41 1.77 16 22 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 23 N -0.92 -26.11 11.31 55.49 0.63 -25.48 16 24 Si 0.91 21.83 29.56 -169.99 -5.02 16.80 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 C 0.13 2.70 7.57 -2.97 -0.02 2.68 16 29 H 0.06 0.72 7.84 -51.93 -0.41 0.32 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.69 5.64 -51.93 -0.29 0.40 16 32 H 0.07 0.81 6.81 -51.93 -0.35 0.45 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.56 8.04 -51.92 -0.42 0.15 16 35 H 0.05 0.56 7.48 -51.93 -0.39 0.18 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.83 6.85 -51.93 -0.36 0.47 16 38 H 0.41 4.02 7.83 -40.82 -0.32 3.70 16 39 H 0.40 1.70 8.84 -40.82 -0.36 1.33 16 40 H 0.41 2.26 8.93 -40.82 -0.36 1.89 16 41 H 0.40 4.73 8.15 -40.82 -0.33 4.40 16 42 H 0.07 1.37 7.01 -51.92 -0.36 1.00 16 43 H 0.09 2.05 8.03 -51.93 -0.42 1.63 16 44 H 0.05 0.84 7.26 -51.93 -0.38 0.46 16 45 H 0.03 0.48 7.87 -51.93 -0.41 0.07 16 46 H 0.37 4.02 9.12 45.56 0.42 4.43 16 47 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.09 2.15 6.10 -51.93 -0.32 1.83 16 49 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 50 H 0.05 1.09 8.10 -51.93 -0.42 0.67 16 51 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 398.71 15.07 6.01 6.01 Total: -1.00 -33.80 398.71 -7.42 -41.22 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: -7.53 Total: 14.29 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: -0.36 Total: 12.57 kcal Atomic # 7 Polarization: -64.26 SS G_CDS: -0.18 Total: -64.45 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.33 Total: -26.45 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.80 -7.42 -41.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675106038.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.054 kcal (2) G-P(sol) polarization free energy of solvation -33.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds