Wall clock time and date at job start Wed Apr 1 2020 01:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47084 * 2 1 4 4 C 1.53008 * 109.46904 * 240.00273 * 2 1 3 5 5 C 1.53003 * 109.47384 * 120.00403 * 2 1 3 6 6 H 1.09004 * 109.46753 * 304.93674 * 5 2 1 7 7 N 1.46506 * 109.46886 * 64.93340 * 5 2 1 8 8 C 1.34780 * 119.99952 * 274.99983 * 7 5 2 9 9 N 1.34770 * 119.99596 * 180.02562 * 8 7 5 10 10 O 1.21588 * 120.00131 * 0.02562 * 8 7 5 11 11 C 1.50696 * 109.47171 * 184.93235 * 5 2 1 12 12 O 1.21279 * 120.00494 * 268.08312 * 11 5 2 13 13 N 1.34779 * 119.99478 * 88.08311 * 11 5 2 14 14 C 1.46506 * 119.99765 * 175.41020 * 13 11 5 15 15 C 1.53006 * 112.94235 * 295.42732 * 14 13 11 16 16 C 1.52995 * 109.47242 * 302.29017 * 15 14 13 17 17 O 1.42900 * 109.47117 * 184.57697 * 16 15 14 18 18 C 1.53943 * 113.74225 * 163.83741 * 14 13 11 19 19 N 1.47805 * 86.03567 * 222.08056 * 18 14 13 20 20 C 1.36946 * 134.45889 * 204.64348 * 19 18 14 21 21 H 1.07993 * 120.00208 * 183.76849 * 20 19 18 22 22 C 1.38809 * 119.99416 * 3.76505 * 20 19 18 23 23 N 1.31619 * 120.00582 * 6.12499 * 22 20 19 24 24 Si 1.86808 * 119.99733 * 186.12429 * 22 20 19 25 25 H 1.48501 * 109.46740 * 94.97039 * 24 22 20 26 26 H 1.48497 * 109.47198 * 214.97041 * 24 22 20 27 27 H 1.48501 * 109.46917 * 334.97172 * 24 22 20 28 28 C 1.47578 * 91.05498 * 24.54884 * 19 18 14 29 29 H 1.09005 * 109.46626 * 299.99194 * 1 2 3 30 30 H 1.08997 * 109.47410 * 59.99244 * 1 2 3 31 31 H 1.09000 * 109.47363 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47222 * 185.82826 * 3 2 1 33 33 H 1.08998 * 109.47431 * 305.83115 * 3 2 1 34 34 H 1.09008 * 109.47256 * 65.83461 * 3 2 1 35 35 H 1.09000 * 109.46719 * 299.99916 * 4 2 1 36 36 H 1.08997 * 109.46692 * 60.00044 * 4 2 1 37 37 H 1.08990 * 109.46852 * 179.97438 * 4 2 1 38 38 H 0.96993 * 119.99990 * 95.00444 * 7 5 2 39 39 H 0.97000 * 120.00341 * 359.97438 * 9 8 7 40 40 H 0.97008 * 119.99623 * 180.02562 * 9 8 7 41 41 H 0.96998 * 120.00640 * 355.40386 * 13 11 5 42 42 H 1.09010 * 109.46524 * 62.28485 * 15 14 13 43 43 H 1.08992 * 109.47400 * 182.28511 * 15 14 13 44 44 H 1.09001 * 109.47114 * 304.57782 * 16 15 14 45 45 H 1.09004 * 109.47407 * 64.57306 * 16 15 14 46 46 H 0.96699 * 114.00075 * 179.97438 * 17 16 15 47 47 H 1.08993 * 113.77056 * 336.34846 * 18 14 13 48 48 H 1.09002 * 113.76694 * 107.74237 * 18 14 13 49 49 H 0.96996 * 119.99971 * 179.97438 * 23 22 20 50 50 H 1.08995 * 113.77451 * 221.15324 * 28 19 18 51 51 H 1.09003 * 113.76603 * 89.74982 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0401 -0.7213 1.2492 6 1 1.6063 -0.2611 2.1370 7 7 1.6512 -2.1326 1.1911 8 6 0.4337 -2.5145 1.6254 9 7 0.0762 -3.8129 1.5724 10 8 -0.3420 -1.6877 2.0648 11 6 3.5421 -0.6164 1.3117 12 8 4.2317 -1.4832 0.8178 13 7 4.1191 0.4408 1.9167 14 6 5.5755 0.4941 2.0665 15 6 6.1226 -0.6108 2.9727 16 6 5.4634 -0.5139 4.3500 17 8 6.0506 -1.4766 5.2278 18 6 6.1128 1.8963 2.4053 19 7 7.1896 1.6058 1.4353 20 6 8.4706 2.0573 1.2606 21 1 9.0509 1.7213 0.4140 22 6 9.0232 2.9469 2.1717 23 7 8.3634 3.2632 3.2658 24 14 10.7034 3.6952 1.8449 25 1 10.5373 5.0181 1.1910 26 1 11.4277 3.8657 3.1300 27 1 11.4806 2.7967 0.9540 28 6 6.3312 0.6325 0.7326 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 3.1250 1.4442 -0.1044 33 1 1.5939 1.9855 -0.8331 34 1 1.7645 1.9253 0.9377 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2073 -2.1392 37 1 3.1299 -0.7208 -1.2496 38 1 2.2698 -2.7921 0.8403 39 1 0.6949 -4.4724 1.2215 40 1 -0.8002 -4.0877 1.8846 41 1 3.5701 1.1665 2.2527 42 1 5.9031 -1.5836 2.5325 43 1 7.2012 -0.4942 3.0771 44 1 5.6139 0.4868 4.7552 45 1 4.3955 -0.7111 4.2564 46 1 5.6805 -1.4715 6.1211 47 1 5.4515 2.7063 2.0980 48 1 6.4612 1.9968 3.4332 49 1 8.7498 3.8846 3.9025 50 1 6.8536 -0.2741 0.4274 51 1 5.7341 1.0706 -0.0673 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675106038.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:49 Heat of formation + Delta-G solvation = -95.441296 kcal Electronic energy + Delta-G solvation = -32816.906050 eV Core-core repulsion = 28558.953324 eV Total energy + Delta-G solvation = -4257.952726 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.09544 -40.90489 -39.51513 -37.70287 -37.65074 -35.35951 -34.91756 -33.83373 -33.75567 -31.93360 -29.21585 -28.31895 -28.14019 -27.74171 -26.83459 -25.01199 -23.36851 -22.29467 -22.04531 -20.20786 -19.92077 -19.56215 -18.76219 -18.58828 -18.24060 -17.36584 -17.13048 -17.04898 -16.69848 -16.21859 -15.97303 -15.76351 -15.53939 -15.36211 -15.09326 -14.99885 -14.52575 -14.45799 -14.29152 -13.77449 -13.62943 -13.31382 -13.25609 -13.03932 -12.93257 -12.87235 -12.78724 -12.56320 -12.49900 -12.25001 -12.24157 -12.02859 -11.84910 -11.72697 -11.68540 -11.38144 -11.30276 -10.96957 -10.88946 -10.65657 -10.54543 -10.07644 -9.91381 -8.92380 -7.90549 -5.24517 1.46512 1.47466 1.47890 1.56670 1.78155 2.18768 2.33503 2.51516 3.14297 3.27279 3.36880 3.57171 3.62212 3.71144 3.75759 3.89632 4.11047 4.14452 4.28197 4.32981 4.37650 4.48271 4.53416 4.71748 4.73753 4.78189 4.83009 4.87935 4.93649 5.00732 5.04423 5.06406 5.14358 5.14844 5.18541 5.26172 5.29807 5.36291 5.46063 5.50602 5.53233 5.70392 5.88447 5.93049 6.10231 6.56048 6.89469 6.91485 7.06777 7.22468 7.58992 7.69450 8.51758 9.24489 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.016132 B = 0.003247 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.213767 B = 8622.137845 C = 9580.284581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.066 4.066 3 C -0.152 4.152 4 C -0.136 4.136 5 C 0.164 3.836 6 H 0.108 0.892 7 N -0.721 5.721 8 C 0.705 3.295 9 N -0.850 5.850 10 O -0.623 6.623 11 C 0.521 3.479 12 O -0.554 6.554 13 N -0.700 5.700 14 C 0.159 3.841 15 C -0.087 4.087 16 C 0.092 3.908 17 O -0.592 6.592 18 C 0.162 3.838 19 N -0.630 5.630 20 C -0.235 4.235 21 H 0.078 0.922 22 C -0.057 4.057 23 N -0.943 5.943 24 Si 0.974 3.026 25 H -0.287 1.287 26 H -0.293 1.293 27 H -0.272 1.272 28 C 0.130 3.870 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.043 0.957 38 H 0.410 0.590 39 H 0.411 0.589 40 H 0.422 0.578 41 H 0.412 0.588 42 H 0.066 0.934 43 H 0.051 0.949 44 H 0.046 0.954 45 H 0.058 0.942 46 H 0.396 0.604 47 H 0.036 0.964 48 H 0.064 0.936 49 H 0.250 0.750 50 H 0.039 0.961 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.125 -11.019 -2.780 22.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.068 4.068 3 C -0.210 4.210 4 C -0.194 4.194 5 C 0.054 3.946 6 H 0.125 0.875 7 N -0.379 5.379 8 C 0.404 3.596 9 N -0.419 5.419 10 O -0.504 6.504 11 C 0.307 3.693 12 O -0.431 6.431 13 N -0.353 5.353 14 C 0.072 3.928 15 C -0.126 4.126 16 C 0.015 3.985 17 O -0.400 6.400 18 C 0.036 3.964 19 N -0.357 5.357 20 C -0.363 4.363 21 H 0.096 0.904 22 C -0.251 4.251 23 N -0.591 5.591 24 Si 0.803 3.197 25 H -0.214 1.214 26 H -0.220 1.220 27 H -0.197 1.197 28 C 0.004 3.996 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.247 0.753 39 H 0.241 0.759 40 H 0.256 0.744 41 H 0.250 0.750 42 H 0.085 0.915 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.245 0.755 47 H 0.054 0.946 48 H 0.082 0.918 49 H 0.059 0.941 50 H 0.057 0.943 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -18.512 -10.827 -3.233 21.688 hybrid contribution 0.857 0.405 0.286 0.990 sum -17.655 -10.422 -2.947 20.713 Atomic orbital electron populations 1.21753 0.92460 1.01836 1.01482 1.20841 0.96953 0.95523 0.93509 1.22030 1.00901 0.94452 1.03592 1.21810 1.00447 1.00414 0.96709 1.20680 0.89792 0.83094 1.01081 0.87456 1.44691 1.16269 1.08562 1.68346 1.15966 0.81704 0.83760 0.78220 1.42801 1.22335 1.06137 1.70627 1.90959 1.52887 1.52265 1.54305 1.20712 0.90247 0.81379 0.76957 1.90679 1.65283 1.40790 1.46352 1.46013 1.06856 1.22857 1.59567 1.22214 0.78608 0.96245 0.95780 1.21171 0.99835 0.97741 0.93830 1.21955 0.95812 0.91327 0.89438 1.86432 1.66702 1.60099 1.26810 1.22594 0.87042 0.90786 0.95954 1.45913 1.09060 1.47564 1.33194 1.19277 0.88191 1.21625 1.07256 0.90397 1.25499 1.02024 1.01016 0.96529 1.69939 1.39602 1.38342 1.11179 0.85126 0.79510 0.78359 0.76726 1.21389 1.21965 1.19663 1.22853 0.90819 0.91826 0.94086 0.92757 0.92280 0.93214 0.93228 0.90887 0.90981 0.92265 0.91757 0.93775 0.75337 0.75898 0.74447 0.75048 0.91491 0.93042 0.93615 0.92416 0.75473 0.94621 0.91778 0.94080 0.94264 0.93697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.31 7.07 71.98 0.51 -1.80 16 2 C -0.07 -1.30 0.62 -52.18 -0.03 -1.33 16 3 C -0.15 -2.89 7.40 71.98 0.53 -2.36 16 4 C -0.14 -2.75 8.03 71.98 0.58 -2.18 16 5 C 0.16 3.47 1.94 44.24 0.09 3.55 16 6 H 0.11 2.30 7.58 -2.38 -0.02 2.28 16 7 N -0.72 -13.72 4.04 -461.40 -1.86 -15.59 16 8 C 0.71 13.72 7.40 179.06 1.33 15.05 16 9 N -0.85 -9.36 8.88 -184.75 -1.64 -11.00 16 10 O -0.62 -16.38 14.31 -3.99 -0.06 -16.44 16 11 C 0.52 13.57 5.00 87.66 0.44 14.01 16 12 O -0.55 -17.46 13.64 -3.02 -0.04 -17.51 16 13 N -0.70 -18.78 3.79 -427.58 -1.62 -20.40 16 14 C 0.16 5.72 0.66 5.36 0.00 5.72 16 15 C -0.09 -3.28 4.82 30.59 0.15 -3.13 16 16 C 0.09 2.90 6.80 71.98 0.49 3.39 16 17 O -0.59 -18.34 13.66 -148.98 -2.03 -20.38 16 18 C 0.16 7.09 6.83 86.44 0.59 7.68 16 19 N -0.63 -31.77 3.54 -715.63 -2.53 -34.30 16 20 C -0.24 -13.14 10.69 84.03 0.90 -12.25 16 21 H 0.08 4.26 7.84 -2.91 -0.02 4.24 16 22 C -0.06 -3.17 5.50 84.86 0.47 -2.70 16 23 N -0.94 -54.57 11.31 21.65 0.24 -54.32 16 24 Si 0.97 45.37 29.56 68.60 2.03 47.40 16 25 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 26 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 27 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 28 C 0.13 5.47 7.57 86.49 0.66 6.13 16 29 H 0.05 1.16 7.84 -2.38 -0.02 1.14 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.05 1.07 5.64 -2.39 -0.01 1.06 16 32 H 0.05 1.12 6.81 -2.38 -0.02 1.11 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.07 1.19 8.04 -2.38 -0.02 1.17 16 35 H 0.06 1.12 7.48 -2.39 -0.02 1.10 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.04 1.08 6.85 -2.39 -0.02 1.06 16 38 H 0.41 7.35 7.83 -92.71 -0.73 6.62 16 39 H 0.41 2.47 8.84 -92.71 -0.82 1.65 16 40 H 0.42 3.62 8.93 -92.70 -0.83 2.79 16 41 H 0.41 9.07 8.15 -92.71 -0.76 8.32 16 42 H 0.07 2.57 7.01 -2.38 -0.02 2.56 16 43 H 0.05 2.36 8.03 -2.39 -0.02 2.35 16 44 H 0.05 1.49 7.26 -2.39 -0.02 1.47 16 45 H 0.06 1.54 7.87 -2.39 -0.02 1.52 16 46 H 0.40 7.82 9.12 -74.06 -0.68 7.14 16 47 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 48 H 0.06 3.16 6.10 -2.39 -0.01 3.15 16 49 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 50 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 51 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -73.54 398.71 -3.63 -77.17 By element: Atomic # 1 Polarization: 38.37 SS G_CDS: -2.80 Total: 35.57 kcal Atomic # 6 Polarization: 23.10 SS G_CDS: 6.69 Total: 29.79 kcal Atomic # 7 Polarization: -128.20 SS G_CDS: -7.41 Total: -135.61 kcal Atomic # 8 Polarization: -52.19 SS G_CDS: -2.13 Total: -54.32 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -73.54 -3.63 -77.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675106038.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.269 kcal (2) G-P(sol) polarization free energy of solvation -73.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds