Wall clock time and date at job start Wed Apr 1 2020 01:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46684 * 2 1 4 4 C 1.53006 * 109.47035 * 179.97438 * 3 2 1 5 5 C 1.52993 * 109.47101 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47473 * 305.00123 * 5 4 3 7 7 F 1.39898 * 109.47276 * 65.00457 * 5 4 3 8 8 C 1.50707 * 109.46859 * 184.99934 * 5 4 3 9 9 O 1.21284 * 119.99853 * 112.53223 * 8 5 4 10 10 N 1.34779 * 120.00158 * 292.52257 * 8 5 4 11 11 C 1.47483 * 125.66159 * 354.55090 * 10 8 5 12 12 C 1.55019 * 104.90337 * 204.01989 * 11 10 8 13 13 C 1.54519 * 101.51774 * 323.62573 * 12 11 10 14 14 C 1.47182 * 125.66043 * 174.23923 * 10 8 5 15 15 C 1.52511 * 110.06240 * 153.09834 * 13 12 11 16 16 N 1.47315 * 108.37990 * 72.02033 * 15 13 12 17 17 C 1.36938 * 121.05493 * 229.39334 * 16 15 13 18 18 H 1.08001 * 119.99385 * 152.52516 * 17 16 15 19 19 C 1.38808 * 120.00302 * 332.52586 * 17 16 15 20 20 N 1.31625 * 120.00046 * 160.74959 * 19 17 16 21 21 Si 1.86799 * 120.00185 * 340.74341 * 19 17 16 22 22 H 1.48502 * 109.47034 * 90.60247 * 21 19 17 23 23 H 1.48498 * 109.47254 * 210.60182 * 21 19 17 24 24 H 1.48505 * 109.46877 * 330.60240 * 21 19 17 25 25 C 1.47157 * 117.88259 * 49.41981 * 16 15 13 26 26 C 1.53279 * 108.53998 * 308.88577 * 25 16 15 27 27 O 1.42067 * 110.33462 * 276.04818 * 13 12 11 28 28 H 1.08996 * 109.46538 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46840 * 300.00114 * 1 2 3 30 30 H 1.09000 * 109.46823 * 60.00556 * 1 2 3 31 31 H 1.08995 * 109.47129 * 239.99546 * 2 1 3 32 32 H 1.09000 * 109.46823 * 119.99443 * 2 1 3 33 33 H 1.08995 * 109.47708 * 59.99900 * 3 2 1 34 34 H 1.09000 * 109.47036 * 299.99313 * 3 2 1 35 35 H 1.09000 * 109.46582 * 59.99830 * 4 3 2 36 36 H 1.09004 * 109.46808 * 300.00124 * 4 3 2 37 37 H 1.09007 * 109.46939 * 305.82906 * 6 5 4 38 38 H 1.08999 * 109.47527 * 65.83136 * 6 5 4 39 39 H 1.09004 * 109.47055 * 185.83047 * 6 5 4 40 40 H 1.09002 * 110.35330 * 322.87588 * 11 10 8 41 41 H 1.09005 * 110.35490 * 85.16231 * 11 10 8 42 42 H 1.09001 * 111.01482 * 81.67532 * 12 11 10 43 43 H 1.08993 * 111.02228 * 205.52637 * 12 11 10 44 44 H 1.08997 * 109.91019 * 297.85290 * 14 10 8 45 45 H 1.08991 * 109.91132 * 59.12310 * 14 10 8 46 46 H 1.08993 * 109.68497 * 191.74394 * 15 13 12 47 47 H 1.09000 * 109.68261 * 312.26460 * 15 13 12 48 48 H 0.96991 * 119.99937 * 179.97438 * 20 19 17 49 49 H 1.09004 * 109.62493 * 68.60145 * 25 16 15 50 50 H 1.08996 * 109.62421 * 188.97911 * 25 16 15 51 51 H 1.09001 * 109.51047 * 172.80223 * 26 25 16 52 52 H 1.08995 * 109.51531 * 292.95197 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 6 3.4703 3.6410 -1.1823 7 9 3.7094 3.5112 1.1949 8 6 5.5819 2.8869 -0.1232 9 8 6.1075 3.3175 -1.1279 10 7 6.3412 2.4101 0.8831 11 6 5.8445 1.9645 2.1984 12 6 7.0571 2.1107 3.1529 13 6 8.2282 1.7106 2.2276 14 6 7.8030 2.2416 0.8496 15 6 9.5154 2.3841 2.6918 16 7 9.9551 1.7357 3.9394 17 6 10.2926 2.4773 5.0400 18 1 10.1824 2.0570 6.0288 19 6 10.7762 3.7691 4.8849 20 7 10.7444 4.6098 5.8972 21 14 11.4724 4.3145 3.2395 22 1 10.3872 4.9012 2.4128 23 1 12.5302 5.3326 3.4625 24 1 12.0533 3.1432 2.5351 25 6 10.0206 0.2658 3.9650 26 6 8.6830 -0.2905 3.4643 27 8 8.3728 0.2976 2.1971 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 3.9337 0.9286 -0.8891 36 1 3.9330 0.9289 0.8909 37 1 3.6719 3.0963 -2.1047 38 1 2.3932 3.7296 -1.0405 39 1 3.9117 4.6358 -1.2439 40 1 5.0231 2.6003 2.5287 41 1 5.5235 0.9239 2.1498 42 1 7.1635 3.1401 3.4950 43 1 6.9745 1.4269 3.9977 44 1 8.0766 1.5270 0.0734 45 1 8.2830 3.2015 0.6598 46 1 10.2849 2.2709 1.9283 47 1 9.3310 3.4430 2.8730 48 1 11.0827 5.5123 5.7888 49 1 10.8258 -0.0761 3.3147 50 1 10.2035 -0.0747 4.9841 51 1 8.7567 -1.3725 3.3552 52 1 7.8973 -0.0487 4.1800 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675423122.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:50 Heat of formation + Delta-G solvation = -103.867265 kcal Electronic energy + Delta-G solvation = -32563.335567 eV Core-core repulsion = 28285.097503 eV Total energy + Delta-G solvation = -4278.238065 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -48.13070 -40.46248 -39.09505 -36.58108 -36.32119 -34.72661 -33.15256 -31.71486 -31.63985 -29.81429 -28.96666 -28.03880 -26.53418 -25.05214 -23.84848 -23.45926 -22.27047 -21.27620 -20.88261 -19.54986 -19.17421 -17.65432 -17.34100 -16.49419 -16.20999 -16.07112 -15.89041 -15.48477 -15.06750 -14.95147 -14.74600 -14.22786 -14.03422 -14.00619 -13.84993 -13.72244 -13.25404 -13.16849 -13.05766 -12.68116 -12.59070 -12.55850 -12.42113 -12.34023 -12.03898 -11.86861 -11.69315 -11.62762 -11.48890 -11.44885 -11.17799 -11.15169 -10.96875 -10.80981 -10.70792 -10.45313 -10.26630 -9.84080 -9.74191 -9.59198 -9.42139 -8.68666 -8.63020 -7.07554 -6.04830 -3.43617 2.34380 2.75184 3.24829 3.43078 3.44449 3.91054 3.97870 4.11774 4.33965 4.41317 4.43035 4.61333 4.66904 4.71394 4.72242 4.84290 5.04692 5.05626 5.10829 5.27013 5.27447 5.30392 5.36950 5.43943 5.45265 5.50069 5.52603 5.59183 5.63001 5.68017 5.72980 5.73536 5.77700 5.79771 5.86826 5.89832 5.95865 6.00738 6.02038 6.08093 6.19803 6.25206 6.34573 6.40924 6.42972 6.64526 7.38579 7.60161 7.78641 7.92390 8.21228 8.77762 9.59045 9.95467 11.10653 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.016086 B = 0.003224 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.242606 B = 8682.602852 C = 9359.701029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.121 4.121 4 C -0.140 4.140 5 C 0.113 3.887 6 C -0.158 4.158 7 F -0.191 7.191 8 C 0.513 3.487 9 O -0.528 6.528 10 N -0.602 5.602 11 C 0.091 3.909 12 C -0.143 4.143 13 C 0.095 3.905 14 C 0.121 3.879 15 C 0.111 3.889 16 N -0.604 5.604 17 C -0.261 4.261 18 H 0.089 0.911 19 C 0.027 3.973 20 N -0.905 5.905 21 Si 0.877 3.123 22 H -0.286 1.286 23 H -0.300 1.300 24 H -0.270 1.270 25 C 0.112 3.888 26 C 0.044 3.956 27 O -0.373 6.373 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.035 0.965 47 H 0.085 0.915 48 H 0.264 0.736 49 H 0.031 0.969 50 H 0.073 0.927 51 H 0.088 0.912 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.112 -9.062 -11.060 23.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.158 4.158 4 C -0.178 4.178 5 C 0.091 3.909 6 C -0.215 4.215 7 F -0.172 7.172 8 C 0.299 3.701 9 O -0.405 6.405 10 N -0.335 5.335 11 C -0.032 4.032 12 C -0.181 4.181 13 C 0.053 3.947 14 C -0.001 4.001 15 C -0.015 4.015 16 N -0.329 5.329 17 C -0.389 4.389 18 H 0.106 0.894 19 C -0.172 4.172 20 N -0.547 5.547 21 Si 0.707 3.293 22 H -0.214 1.214 23 H -0.228 1.228 24 H -0.195 1.195 25 C -0.014 4.014 26 C -0.034 4.034 27 O -0.292 6.292 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.089 0.911 42 H 0.109 0.891 43 H 0.113 0.887 44 H 0.099 0.901 45 H 0.102 0.898 46 H 0.053 0.947 47 H 0.103 0.897 48 H 0.074 0.926 49 H 0.049 0.951 50 H 0.092 0.908 51 H 0.106 0.894 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.832 -8.725 -11.685 23.036 hybrid contribution 0.627 0.572 -0.425 0.949 sum -17.204 -8.154 -12.110 22.564 Atomic orbital electron populations 1.21770 0.95718 1.01639 1.01874 1.21517 0.95985 0.96425 1.02266 1.21673 0.93501 0.97567 1.03059 1.22238 0.97506 0.93300 1.04777 1.21165 0.91271 0.94978 0.83465 1.22208 1.01222 1.01635 0.96467 1.92864 1.92380 1.84095 1.47859 1.20460 0.88731 0.78095 0.82820 1.90723 1.73867 1.45919 1.29981 1.48536 1.08085 1.62205 1.14704 1.22718 0.98541 0.99993 0.81912 1.23203 0.92882 1.04313 0.97743 1.22329 0.96293 0.82770 0.93282 1.21862 0.79716 1.01403 0.97162 1.21815 0.92462 0.97682 0.89514 1.44365 1.77069 1.00690 1.10792 1.18869 1.38187 0.96091 0.85761 0.89356 1.25268 0.98758 0.96569 0.96650 1.69802 1.48171 1.05503 1.31245 0.87069 0.79181 0.78116 0.84919 1.21378 1.22808 1.19464 1.21631 0.94539 0.84972 1.00237 1.23155 0.97937 0.96810 0.85484 1.87698 1.91187 1.18874 1.31420 0.92749 0.92636 0.92763 0.91939 0.91798 0.91087 0.91162 0.89642 0.89799 0.89935 0.90393 0.90708 0.89262 0.91120 0.89139 0.88697 0.90072 0.89826 0.94693 0.89749 0.92578 0.95070 0.90835 0.89362 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.16 0.37 -0.55 16 2 C -0.12 -0.83 5.93 -26.73 -0.16 -0.99 16 3 C -0.12 -0.89 4.65 -26.73 -0.12 -1.02 16 4 C -0.14 -1.28 4.43 -26.73 -0.12 -1.40 16 5 C 0.11 1.31 0.90 -91.77 -0.08 1.22 16 6 C -0.16 -1.57 7.55 37.16 0.28 -1.29 16 7 F -0.19 -2.41 14.22 2.25 0.03 -2.38 16 8 C 0.51 7.78 6.88 -10.98 -0.08 7.70 16 9 O -0.53 -9.47 16.33 5.55 0.09 -9.38 16 10 N -0.60 -9.21 3.33 -170.67 -0.57 -9.78 16 11 C 0.09 1.23 5.63 -2.44 -0.01 1.22 16 12 C -0.14 -2.32 5.91 -24.87 -0.15 -2.47 16 13 C 0.10 1.68 0.83 -89.72 -0.07 1.60 16 14 C 0.12 2.03 6.25 -3.32 -0.02 2.01 16 15 C 0.11 2.38 2.92 -3.85 -0.01 2.37 16 16 N -0.60 -13.72 2.71 -172.18 -0.47 -14.18 16 17 C -0.26 -6.97 10.10 -15.06 -0.15 -7.12 16 18 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 19 C 0.03 0.76 5.26 -17.43 -0.09 0.67 16 20 N -0.90 -27.01 13.97 55.49 0.78 -26.23 16 21 Si 0.88 22.06 24.27 -169.99 -4.13 17.94 16 22 H -0.29 -6.97 6.56 56.52 0.37 -6.60 16 23 H -0.30 -7.72 7.11 56.52 0.40 -7.31 16 24 H -0.27 -6.71 6.60 56.52 0.37 -6.34 16 25 C 0.11 2.08 6.72 -3.54 -0.02 2.06 16 26 C 0.04 0.68 6.76 37.30 0.25 0.93 16 27 O -0.37 -6.35 10.21 -35.23 -0.36 -6.71 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.56 7.93 -51.93 -0.41 0.15 16 34 H 0.07 0.47 6.48 -51.93 -0.34 0.13 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.78 6.15 -51.93 -0.32 0.46 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.61 6.70 -51.93 -0.35 0.26 16 39 H 0.07 0.84 8.04 -51.93 -0.42 0.42 16 40 H 0.09 1.15 6.02 -51.93 -0.31 0.83 16 41 H 0.07 0.86 7.21 -51.93 -0.37 0.48 16 42 H 0.09 1.63 7.86 -51.93 -0.41 1.22 16 43 H 0.09 1.50 5.98 -51.93 -0.31 1.19 16 44 H 0.08 1.33 8.06 -51.93 -0.42 0.91 16 45 H 0.08 1.47 7.79 -51.93 -0.40 1.07 16 46 H 0.04 0.77 6.79 -51.93 -0.35 0.42 16 47 H 0.08 1.96 4.59 -51.93 -0.24 1.72 16 48 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 49 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.07 1.31 7.96 -51.93 -0.41 0.90 16 51 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 52 H 0.05 0.81 6.13 -51.93 -0.32 0.49 16 LS Contribution 389.29 15.07 5.87 5.87 Total: -1.00 -31.27 389.29 -7.76 -39.03 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -8.81 Total: 0.89 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -0.19 Total: 4.95 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: -0.26 Total: -50.20 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.27 Total: -16.09 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.03 Total: -2.38 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.13 Total: 17.94 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.27 -7.76 -39.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675423122.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.840 kcal (2) G-P(sol) polarization free energy of solvation -31.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds