Wall clock time and date at job start Wed Apr 1 2020 01:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46684 * 2 1 4 4 C 1.53006 * 109.47035 * 179.97438 * 3 2 1 5 5 C 1.52993 * 109.47101 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47473 * 305.00123 * 5 4 3 7 7 F 1.39898 * 109.47276 * 65.00457 * 5 4 3 8 8 C 1.50707 * 109.46859 * 184.99934 * 5 4 3 9 9 O 1.21284 * 119.99853 * 112.53223 * 8 5 4 10 10 N 1.34779 * 120.00158 * 292.52257 * 8 5 4 11 11 C 1.47483 * 125.66159 * 354.55090 * 10 8 5 12 12 C 1.55019 * 104.90337 * 204.01989 * 11 10 8 13 13 C 1.54519 * 101.51774 * 323.62573 * 12 11 10 14 14 C 1.47182 * 125.66043 * 174.23923 * 10 8 5 15 15 C 1.52511 * 110.06240 * 153.09834 * 13 12 11 16 16 N 1.47315 * 108.37990 * 72.02033 * 15 13 12 17 17 C 1.36938 * 121.05493 * 229.39334 * 16 15 13 18 18 H 1.08001 * 119.99385 * 152.52516 * 17 16 15 19 19 C 1.38808 * 120.00302 * 332.52586 * 17 16 15 20 20 N 1.31625 * 120.00046 * 160.74959 * 19 17 16 21 21 Si 1.86799 * 120.00185 * 340.74341 * 19 17 16 22 22 H 1.48502 * 109.47034 * 90.60247 * 21 19 17 23 23 H 1.48498 * 109.47254 * 210.60182 * 21 19 17 24 24 H 1.48505 * 109.46877 * 330.60240 * 21 19 17 25 25 C 1.47157 * 117.88259 * 49.41981 * 16 15 13 26 26 C 1.53279 * 108.53998 * 308.88577 * 25 16 15 27 27 O 1.42067 * 110.33462 * 276.04818 * 13 12 11 28 28 H 1.08996 * 109.46538 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46840 * 300.00114 * 1 2 3 30 30 H 1.09000 * 109.46823 * 60.00556 * 1 2 3 31 31 H 1.08995 * 109.47129 * 239.99546 * 2 1 3 32 32 H 1.09000 * 109.46823 * 119.99443 * 2 1 3 33 33 H 1.08995 * 109.47708 * 59.99900 * 3 2 1 34 34 H 1.09000 * 109.47036 * 299.99313 * 3 2 1 35 35 H 1.09000 * 109.46582 * 59.99830 * 4 3 2 36 36 H 1.09004 * 109.46808 * 300.00124 * 4 3 2 37 37 H 1.09007 * 109.46939 * 305.82906 * 6 5 4 38 38 H 1.08999 * 109.47527 * 65.83136 * 6 5 4 39 39 H 1.09004 * 109.47055 * 185.83047 * 6 5 4 40 40 H 1.09002 * 110.35330 * 322.87588 * 11 10 8 41 41 H 1.09005 * 110.35490 * 85.16231 * 11 10 8 42 42 H 1.09001 * 111.01482 * 81.67532 * 12 11 10 43 43 H 1.08993 * 111.02228 * 205.52637 * 12 11 10 44 44 H 1.08997 * 109.91019 * 297.85290 * 14 10 8 45 45 H 1.08991 * 109.91132 * 59.12310 * 14 10 8 46 46 H 1.08993 * 109.68497 * 191.74394 * 15 13 12 47 47 H 1.09000 * 109.68261 * 312.26460 * 15 13 12 48 48 H 0.96991 * 119.99937 * 179.97438 * 20 19 17 49 49 H 1.09004 * 109.62493 * 68.60145 * 25 16 15 50 50 H 1.08996 * 109.62421 * 188.97911 * 25 16 15 51 51 H 1.09001 * 109.51047 * 172.80223 * 26 25 16 52 52 H 1.08995 * 109.51531 * 292.95197 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 6 3.4703 3.6410 -1.1823 7 9 3.7094 3.5112 1.1949 8 6 5.5819 2.8869 -0.1232 9 8 6.1075 3.3175 -1.1279 10 7 6.3412 2.4101 0.8831 11 6 5.8445 1.9645 2.1984 12 6 7.0571 2.1107 3.1529 13 6 8.2282 1.7106 2.2276 14 6 7.8030 2.2416 0.8496 15 6 9.5154 2.3841 2.6918 16 7 9.9551 1.7357 3.9394 17 6 10.2926 2.4773 5.0400 18 1 10.1824 2.0570 6.0288 19 6 10.7762 3.7691 4.8849 20 7 10.7444 4.6098 5.8972 21 14 11.4724 4.3145 3.2395 22 1 10.3872 4.9012 2.4128 23 1 12.5302 5.3326 3.4625 24 1 12.0533 3.1432 2.5351 25 6 10.0206 0.2658 3.9650 26 6 8.6830 -0.2905 3.4643 27 8 8.3728 0.2976 2.1971 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 3.9337 0.9286 -0.8891 36 1 3.9330 0.9289 0.8909 37 1 3.6719 3.0963 -2.1047 38 1 2.3932 3.7296 -1.0405 39 1 3.9117 4.6358 -1.2439 40 1 5.0231 2.6003 2.5287 41 1 5.5235 0.9239 2.1498 42 1 7.1635 3.1401 3.4950 43 1 6.9745 1.4269 3.9977 44 1 8.0766 1.5270 0.0734 45 1 8.2830 3.2015 0.6598 46 1 10.2849 2.2709 1.9283 47 1 9.3310 3.4430 2.8730 48 1 11.0827 5.5123 5.7888 49 1 10.8258 -0.0761 3.3147 50 1 10.2035 -0.0747 4.9841 51 1 8.7567 -1.3725 3.3552 52 1 7.8973 -0.0487 4.1800 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675423122.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:49 Heat of formation + Delta-G solvation = -123.350145 kcal Electronic energy + Delta-G solvation = -32564.180408 eV Core-core repulsion = 28285.097503 eV Total energy + Delta-G solvation = -4279.082906 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.08806 -41.78663 -40.39693 -37.79543 -37.13912 -36.43495 -33.91317 -33.67517 -33.03305 -31.12100 -29.62290 -29.53139 -28.00839 -26.08093 -25.48306 -24.59563 -23.30915 -22.62942 -21.62196 -20.82426 -20.48351 -19.15066 -18.78205 -17.92783 -17.44245 -17.21672 -16.90444 -16.62218 -16.36854 -16.16284 -15.89590 -15.88666 -15.58432 -15.40769 -14.75803 -14.59544 -14.52124 -14.31633 -14.06312 -13.96806 -13.87552 -13.79584 -13.65646 -13.40892 -13.17615 -13.12905 -13.00542 -12.86663 -12.57392 -12.32484 -12.30918 -12.28341 -12.10145 -12.04822 -11.96761 -11.66680 -11.57403 -11.35106 -11.33748 -11.05528 -10.88092 -10.52629 -9.91792 -8.97214 -8.22848 -5.56047 1.17775 1.21271 1.33886 1.40005 1.59039 2.33016 2.58642 2.86413 2.96584 3.18125 3.29911 3.40719 3.48195 3.61801 3.69611 3.74023 4.06638 4.08453 4.10301 4.16454 4.29952 4.31635 4.37748 4.39391 4.43557 4.48997 4.52072 4.56219 4.61462 4.63921 4.72348 4.75201 4.79916 4.82056 4.89295 4.92039 4.94890 4.99411 5.04612 5.06603 5.12276 5.16153 5.21040 5.33397 5.42652 5.52053 5.76895 6.06974 6.17938 6.25377 6.73234 6.78416 7.50914 7.93053 8.96380 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.016086 B = 0.003224 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.242606 B = 8682.602852 C = 9359.701029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.116 4.116 4 C -0.134 4.134 5 C 0.116 3.884 6 C -0.156 4.156 7 F -0.197 7.197 8 C 0.506 3.494 9 O -0.561 6.561 10 N -0.605 5.605 11 C 0.101 3.899 12 C -0.142 4.142 13 C 0.105 3.895 14 C 0.123 3.877 15 C 0.109 3.891 16 N -0.617 5.617 17 C -0.239 4.239 18 H 0.066 0.934 19 C -0.026 4.026 20 N -0.950 5.950 21 Si 0.928 3.072 22 H -0.280 1.280 23 H -0.309 1.309 24 H -0.265 1.265 25 C 0.104 3.896 26 C 0.049 3.951 27 O -0.370 6.370 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.057 0.943 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.065 0.935 43 H 0.101 0.899 44 H 0.086 0.914 45 H 0.067 0.933 46 H 0.029 0.971 47 H 0.060 0.940 48 H 0.262 0.738 49 H 0.035 0.965 50 H 0.078 0.922 51 H 0.129 0.871 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.290 -11.308 -12.460 26.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.153 4.153 4 C -0.172 4.172 5 C 0.095 3.905 6 C -0.214 4.214 7 F -0.177 7.177 8 C 0.294 3.706 9 O -0.440 6.440 10 N -0.338 5.338 11 C -0.020 4.020 12 C -0.180 4.180 13 C 0.063 3.937 14 C 0.000 4.000 15 C -0.017 4.017 16 N -0.342 5.342 17 C -0.368 4.368 18 H 0.084 0.916 19 C -0.221 4.221 20 N -0.596 5.596 21 Si 0.758 3.242 22 H -0.207 1.207 23 H -0.237 1.237 24 H -0.190 1.190 25 C -0.020 4.020 26 C -0.027 4.027 27 O -0.289 6.289 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.122 0.878 39 H 0.076 0.924 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.084 0.916 43 H 0.120 0.880 44 H 0.105 0.895 45 H 0.085 0.915 46 H 0.047 0.953 47 H 0.078 0.922 48 H 0.071 0.929 49 H 0.053 0.947 50 H 0.097 0.903 51 H 0.147 0.853 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.034 -11.020 -13.105 26.354 hybrid contribution 1.323 1.184 0.054 1.776 sum -18.711 -9.835 -13.051 24.843 Atomic orbital electron populations 1.21772 0.95266 1.01972 1.02032 1.21505 0.96362 0.95827 1.02387 1.21654 0.92024 0.98234 1.03407 1.22242 0.98689 0.91220 1.05074 1.21275 0.88598 0.96918 0.83748 1.22247 1.02544 1.00532 0.96052 1.92855 1.92143 1.84401 1.48344 1.21216 0.90268 0.77011 0.82107 1.90703 1.74858 1.47189 1.31271 1.48629 1.07419 1.62268 1.15443 1.22749 0.97320 1.01703 0.80238 1.23129 0.93627 1.02910 0.98330 1.22018 0.94625 0.83097 0.93988 1.21702 0.80960 1.00683 0.96695 1.21758 0.94321 0.96852 0.88757 1.44482 1.77256 1.02436 1.10058 1.18835 1.35794 0.95890 0.86299 0.91616 1.25762 1.00155 0.97140 0.99051 1.69907 1.50603 1.05905 1.33179 0.86226 0.78343 0.77566 0.82047 1.20698 1.23744 1.18989 1.21889 0.96828 0.82270 1.01045 1.23257 0.95897 0.98663 0.84929 1.87719 1.90984 1.17905 1.32293 0.92379 0.92753 0.92363 0.91599 0.91936 0.91383 0.90198 0.89133 0.89720 0.89297 0.87838 0.92364 0.88274 0.88531 0.91642 0.88027 0.89539 0.91452 0.95310 0.92162 0.92911 0.94689 0.90310 0.85296 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 71.98 0.71 -0.73 16 2 C -0.12 -1.28 5.93 30.60 0.18 -1.10 16 3 C -0.12 -1.36 4.65 30.60 0.14 -1.22 16 4 C -0.13 -2.07 4.43 30.59 0.14 -1.93 16 5 C 0.12 2.45 0.90 -11.54 -0.01 2.44 16 6 C -0.16 -2.81 7.55 71.98 0.54 -2.27 16 7 F -0.20 -4.56 14.22 44.97 0.64 -3.92 16 8 C 0.51 14.72 6.88 87.66 0.60 15.33 16 9 O -0.56 -19.87 16.33 -3.04 -0.05 -19.92 16 10 N -0.61 -17.62 3.33 -812.28 -2.71 -20.33 16 11 C 0.10 2.52 5.63 86.88 0.49 3.01 16 12 C -0.14 -4.42 5.91 31.80 0.19 -4.23 16 13 C 0.10 3.56 0.83 -10.21 -0.01 3.55 16 14 C 0.12 4.01 6.25 86.48 0.54 4.55 16 15 C 0.11 4.62 2.92 86.06 0.25 4.87 16 16 N -0.62 -27.69 2.71 -698.66 -1.89 -29.59 16 17 C -0.24 -12.91 10.10 84.03 0.85 -12.06 16 18 H 0.07 3.81 8.06 -2.91 -0.02 3.79 16 19 C -0.03 -1.47 5.26 84.86 0.45 -1.02 16 20 N -0.95 -58.51 13.97 21.65 0.30 -58.21 16 21 Si 0.93 46.76 24.27 68.60 1.67 48.42 16 22 H -0.28 -13.62 6.56 99.48 0.65 -12.97 16 23 H -0.31 -15.85 7.11 99.48 0.71 -15.14 16 24 H -0.27 -12.96 6.60 99.48 0.66 -12.31 16 25 C 0.10 3.67 6.72 86.35 0.58 4.25 16 26 C 0.05 1.36 6.76 72.08 0.49 1.84 16 27 O -0.37 -11.50 10.21 -148.97 -1.52 -13.02 16 28 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.07 0.87 7.93 -2.39 -0.02 0.85 16 34 H 0.08 0.79 6.48 -2.39 -0.02 0.78 16 35 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.08 1.29 6.15 -2.39 -0.01 1.28 16 37 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.10 1.31 6.70 -2.39 -0.02 1.29 16 39 H 0.06 1.24 8.04 -2.38 -0.02 1.23 16 40 H 0.10 2.31 6.02 -2.39 -0.01 2.30 16 41 H 0.10 1.96 7.21 -2.38 -0.02 1.95 16 42 H 0.06 2.37 7.86 -2.39 -0.02 2.35 16 43 H 0.10 3.01 5.98 -2.39 -0.01 3.00 16 44 H 0.09 2.72 8.06 -2.39 -0.02 2.70 16 45 H 0.07 2.40 7.79 -2.39 -0.02 2.38 16 46 H 0.03 1.26 6.79 -2.39 -0.02 1.24 16 47 H 0.06 2.84 4.59 -2.39 -0.01 2.83 16 48 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 49 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 50 H 0.08 2.67 7.96 -2.39 -0.02 2.65 16 51 H 0.13 2.60 8.14 -2.39 -0.02 2.58 16 52 H 0.06 1.63 6.13 -2.39 -0.01 1.62 16 Total: -1.00 -68.81 389.29 3.37 -65.44 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.80 Total: 15.85 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: 6.13 Total: 15.27 kcal Atomic # 7 Polarization: -103.82 SS G_CDS: -4.30 Total: -108.12 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -1.57 Total: -32.94 kcal Atomic # 9 Polarization: -4.56 SS G_CDS: 0.64 Total: -3.92 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.67 Total: 48.42 kcal Total: -68.81 3.37 -65.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675423122.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.911 kcal (2) G-P(sol) polarization free energy of solvation -68.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds