Wall clock time and date at job start Wed Apr 1 2020 01:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47452 * 2 1 4 4 C 1.53004 * 109.47242 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47242 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.46751 * 304.99838 * 5 4 3 7 7 F 1.39892 * 109.47272 * 64.99642 * 5 4 3 8 8 C 1.50693 * 109.47326 * 185.00072 * 5 4 3 9 9 O 1.21283 * 119.99780 * 9.99662 * 8 5 4 10 10 N 1.34772 * 120.00436 * 189.99828 * 8 5 4 11 11 C 1.47483 * 125.66079 * 359.68884 * 10 8 5 12 12 C 1.55248 * 104.79336 * 155.93575 * 11 10 8 13 13 C 1.54489 * 101.43697 * 36.65040 * 12 11 10 14 14 C 1.47172 * 125.66620 * 179.97438 * 10 8 5 15 15 C 1.52525 * 110.09433 * 206.80541 * 13 12 11 16 16 N 1.47306 * 108.39303 * 186.95252 * 15 13 12 17 17 C 1.36935 * 121.06938 * 229.41747 * 16 15 13 18 18 H 1.07996 * 120.00390 * 153.85589 * 17 16 15 19 19 C 1.38819 * 119.99814 * 333.85570 * 17 16 15 20 20 N 1.31617 * 120.00341 * 343.63067 * 19 17 16 21 21 Si 1.86806 * 119.99800 * 163.62593 * 19 17 16 22 22 H 1.48495 * 109.46979 * 60.00107 * 21 19 17 23 23 H 1.48505 * 109.47054 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47029 * 300.00111 * 21 19 17 25 25 C 1.47165 * 117.86765 * 49.40476 * 16 15 13 26 26 C 1.53281 * 108.54668 * 308.86419 * 25 16 15 27 27 O 1.42060 * 110.38654 * 83.76823 * 13 12 11 28 28 H 1.08993 * 109.47585 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47410 * 300.00946 * 1 2 3 30 30 H 1.09000 * 109.46610 * 60.00118 * 1 2 3 31 31 H 1.09001 * 109.47410 * 239.99054 * 2 1 3 32 32 H 1.09000 * 109.46610 * 119.99882 * 2 1 3 33 33 H 1.08999 * 109.47445 * 59.99693 * 3 2 1 34 34 H 1.09000 * 109.47117 * 299.99572 * 3 2 1 35 35 H 1.08999 * 109.47008 * 59.99601 * 4 3 2 36 36 H 1.09000 * 109.46859 * 299.99906 * 4 3 2 37 37 H 1.09005 * 109.46939 * 180.02562 * 6 5 4 38 38 H 1.09002 * 109.47277 * 299.99599 * 6 5 4 39 39 H 1.09002 * 109.47568 * 60.00079 * 6 5 4 40 40 H 1.09002 * 110.35868 * 274.88453 * 11 10 8 41 41 H 1.09006 * 110.35417 * 37.17367 * 11 10 8 42 42 H 1.09002 * 111.19880 * 278.55329 * 12 11 10 43 43 H 1.09001 * 110.91317 * 154.61428 * 12 11 10 44 44 H 1.08999 * 109.91174 * 300.84299 * 14 10 8 45 45 H 1.09001 * 109.91236 * 62.10465 * 14 10 8 46 46 H 1.08998 * 109.68433 * 306.68374 * 15 13 12 47 47 H 1.09002 * 109.67868 * 67.19716 * 15 13 12 48 48 H 0.96996 * 120.00196 * 179.97438 * 20 19 17 49 49 H 1.09005 * 109.62600 * 68.57882 * 25 16 15 50 50 H 1.08998 * 109.62416 * 189.14766 * 25 16 15 51 51 H 1.08995 * 109.50749 * 172.81766 * 26 25 16 52 52 H 1.08997 * 109.50892 * 292.91692 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0802 2.8848 0.0000 6 6 3.4706 3.6407 -1.1824 7 9 3.7096 3.5110 1.1948 8 6 5.5820 2.8865 -0.1232 9 8 6.1702 1.8584 -0.3839 10 7 6.2717 4.0304 0.0563 11 6 5.6862 5.3472 0.3697 12 6 6.8287 6.1331 1.0676 13 6 8.0638 5.6418 0.2803 14 6 7.7336 4.1742 -0.0338 15 6 9.3118 5.7337 1.1525 16 7 10.4851 5.4187 0.3195 17 6 11.4211 4.5084 0.7324 18 1 12.0133 3.9745 0.0040 19 6 11.6086 4.2717 2.0874 20 7 11.1413 5.1236 2.9751 21 14 12.5240 2.7439 2.6507 22 1 13.9011 2.7590 2.0952 23 1 12.5883 2.7242 4.1342 24 1 11.8099 1.5337 2.1705 25 6 10.6192 6.1135 -0.9708 26 6 9.3043 5.9639 -1.7441 27 8 8.2190 6.3924 -0.9157 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 1.8934 -0.5140 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6768 1.9563 -0.8900 35 1 3.9338 0.9283 -0.8891 36 1 3.9330 0.9287 0.8909 37 1 3.8344 4.6683 -1.1831 38 1 3.7594 3.1528 -2.1134 39 1 2.3842 3.6395 -1.0934 40 1 5.3790 5.8532 -0.5456 41 1 4.8375 5.2339 1.0444 42 1 6.9049 5.8652 2.1215 43 1 6.6912 7.2078 0.9481 44 1 8.2163 3.5212 0.6933 45 1 8.0698 3.9255 -1.0404 46 1 9.4062 6.7429 1.5531 47 1 9.2402 5.0186 1.9721 48 1 11.2720 4.9581 3.9219 49 1 10.8241 7.1701 -0.7982 50 1 11.4332 5.6687 -1.5433 51 1 9.3395 6.5775 -2.6443 52 1 9.1616 4.9193 -2.0209 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675423124.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:56 Heat of formation + Delta-G solvation = -109.361678 kcal Electronic energy + Delta-G solvation = -32388.746565 eV Core-core repulsion = 28110.270245 eV Total energy + Delta-G solvation = -4278.476320 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -48.05696 -40.23741 -38.83040 -36.53687 -36.00110 -34.48769 -33.15242 -31.72838 -31.23022 -29.20198 -28.92814 -27.60750 -26.22879 -25.34588 -23.50559 -23.27402 -22.17660 -21.09801 -20.85996 -19.43435 -18.73099 -17.45699 -16.96565 -16.51849 -16.22783 -15.89507 -15.53805 -15.25256 -14.98010 -14.79225 -14.36998 -14.26757 -13.94168 -13.64061 -13.53061 -13.42417 -13.29508 -13.14289 -13.06005 -12.78065 -12.50361 -12.44964 -12.27882 -11.98537 -11.87309 -11.56681 -11.46223 -11.36122 -11.22768 -11.09106 -11.03136 -10.85652 -10.81600 -10.74847 -10.70496 -10.48478 -10.30625 -9.93697 -9.64731 -9.54710 -9.08690 -8.56458 -8.44923 -6.77598 -5.86374 -3.29208 2.52785 2.94402 3.36278 3.42141 3.44589 4.09546 4.19146 4.25673 4.29850 4.43595 4.56338 4.75215 4.78968 4.84116 4.89714 5.00330 5.12774 5.24374 5.28272 5.36001 5.36814 5.40471 5.47743 5.49053 5.55510 5.58050 5.66758 5.74448 5.78004 5.79569 5.80588 5.82392 5.92738 6.01220 6.05511 6.07310 6.11883 6.16958 6.22513 6.27273 6.43235 6.50775 6.59603 6.74962 7.01941 7.39580 7.60130 7.70443 7.86079 8.11543 8.30321 9.08907 9.71770 10.28496 11.22163 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.014309 B = 0.003113 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.339353 B = 8993.198703 C =10018.147201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.122 4.122 4 C -0.125 4.125 5 C 0.112 3.888 6 C -0.176 4.176 7 F -0.193 7.193 8 C 0.509 3.491 9 O -0.528 6.528 10 N -0.602 5.602 11 C 0.090 3.910 12 C -0.116 4.116 13 C 0.085 3.915 14 C 0.096 3.904 15 C 0.163 3.837 16 N -0.595 5.595 17 C -0.254 4.254 18 H 0.068 0.932 19 C 0.004 3.996 20 N -0.904 5.904 21 Si 0.903 3.097 22 H -0.282 1.282 23 H -0.289 1.289 24 H -0.282 1.282 25 C 0.110 3.890 26 C 0.043 3.957 27 O -0.375 6.375 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.071 0.929 46 H 0.034 0.966 47 H 0.097 0.903 48 H 0.256 0.744 49 H 0.027 0.973 50 H 0.063 0.937 51 H 0.084 0.916 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.538 -1.697 -7.128 20.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.160 4.160 4 C -0.163 4.163 5 C 0.091 3.909 6 C -0.234 4.234 7 F -0.173 7.173 8 C 0.295 3.705 9 O -0.405 6.405 10 N -0.335 5.335 11 C -0.032 4.032 12 C -0.154 4.154 13 C 0.044 3.956 14 C -0.026 4.026 15 C 0.037 3.963 16 N -0.319 5.319 17 C -0.383 4.383 18 H 0.086 0.914 19 C -0.195 4.195 20 N -0.548 5.548 21 Si 0.732 3.268 22 H -0.208 1.208 23 H -0.215 1.215 24 H -0.208 1.208 25 C -0.016 4.016 26 C -0.035 4.035 27 O -0.294 6.294 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.103 0.897 45 H 0.089 0.911 46 H 0.052 0.948 47 H 0.115 0.885 48 H 0.066 0.934 49 H 0.045 0.955 50 H 0.081 0.919 51 H 0.102 0.898 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -19.328 -2.163 -7.106 20.706 hybrid contribution 0.797 -0.811 0.476 1.233 sum -18.530 -2.974 -6.630 19.904 Atomic orbital electron populations 1.21770 0.95830 1.01561 1.01792 1.21509 0.95799 0.96565 1.02333 1.21712 0.94120 0.97439 1.02713 1.21981 0.96127 0.92933 1.05283 1.21132 0.91665 0.95086 0.83029 1.22482 1.02518 1.01433 0.96930 1.92842 1.92434 1.83872 1.48182 1.20411 0.88964 0.82841 0.78315 1.90733 1.70145 1.31240 1.48359 1.48604 1.08614 1.08169 1.68090 1.22712 0.97564 0.82905 1.00031 1.22745 0.92314 1.00864 0.99501 1.22695 0.97643 0.88351 0.86952 1.22582 0.78472 0.98604 1.02926 1.21248 0.81958 1.00769 0.92318 1.44107 1.23075 1.47122 1.17566 1.19132 1.14908 1.13622 0.90639 0.91384 1.25024 0.99573 0.98465 0.96411 1.69985 1.49644 1.34340 1.00870 0.86361 0.79720 0.83233 0.77475 1.20791 1.21504 1.20835 1.21586 0.94951 0.96181 0.88914 1.23110 0.88342 0.99017 0.92985 1.87663 1.51164 1.57568 1.33020 0.92807 0.92715 0.92790 0.91860 0.91857 0.91342 0.91331 0.89076 0.90169 0.90595 0.90126 0.89797 0.91076 0.89436 0.88914 0.88976 0.89708 0.91057 0.94786 0.88502 0.93407 0.95474 0.91870 0.89806 0.93525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.12 -0.97 5.93 -26.73 -0.16 -1.12 16 3 C -0.12 -1.04 4.64 -26.73 -0.12 -1.16 16 4 C -0.13 -1.39 4.02 -26.73 -0.11 -1.50 16 5 C 0.11 1.39 0.90 -91.78 -0.08 1.31 16 6 C -0.18 -1.67 8.33 37.16 0.31 -1.36 16 7 F -0.19 -2.50 14.19 2.25 0.03 -2.47 16 8 C 0.51 8.46 6.88 -10.99 -0.08 8.38 16 9 O -0.53 -10.53 16.20 5.56 0.09 -10.44 16 10 N -0.60 -10.04 3.33 -170.54 -0.57 -10.60 16 11 C 0.09 1.24 5.56 -2.31 -0.01 1.23 16 12 C -0.12 -1.77 6.22 -24.76 -0.15 -1.92 16 13 C 0.09 1.61 0.80 -89.73 -0.07 1.54 16 14 C 0.10 1.86 5.96 -3.32 -0.02 1.84 16 15 C 0.16 3.77 3.98 -3.84 -0.02 3.75 16 16 N -0.59 -14.57 2.97 -172.17 -0.51 -15.08 16 17 C -0.25 -6.84 9.66 -15.06 -0.15 -6.98 16 18 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 19 C 0.00 0.11 4.96 -17.43 -0.09 0.02 16 20 N -0.90 -25.65 11.13 55.49 0.62 -25.03 16 21 Si 0.90 21.75 29.58 -169.99 -5.03 16.73 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 C 0.11 2.26 6.72 -3.53 -0.02 2.24 16 26 C 0.04 0.76 6.75 37.30 0.25 1.02 16 27 O -0.38 -6.96 10.26 -35.23 -0.36 -7.32 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.60 7.94 -51.93 -0.41 0.19 16 34 H 0.07 0.50 6.34 -51.93 -0.33 0.17 16 35 H 0.09 1.04 7.81 -51.93 -0.41 0.64 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.08 0.72 6.10 -51.93 -0.32 0.40 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.62 6.34 -51.93 -0.33 0.29 16 40 H 0.07 0.89 7.33 -51.93 -0.38 0.51 16 41 H 0.09 1.08 5.92 -51.93 -0.31 0.77 16 42 H 0.09 1.42 8.01 -51.93 -0.42 1.00 16 43 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.08 1.90 7.61 -51.93 -0.40 1.51 16 45 H 0.07 1.45 6.01 -51.93 -0.31 1.13 16 46 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.10 2.49 5.92 -51.93 -0.31 2.18 16 48 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 49 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.06 1.24 7.96 -51.93 -0.41 0.82 16 51 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 52 H 0.05 0.84 6.22 -51.93 -0.32 0.52 16 LS Contribution 395.50 15.07 5.96 5.96 Total: -1.00 -30.97 395.50 -8.77 -39.74 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -8.85 Total: 1.90 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -0.15 Total: 6.62 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: -0.46 Total: -50.71 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.27 Total: -17.76 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.03 Total: -2.47 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.97 -8.77 -39.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675423124.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.626 kcal (2) G-P(sol) polarization free energy of solvation -30.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds