Wall clock time and date at job start Wed Apr 1 2020 01:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46958 * 2 1 4 4 C 1.53000 * 109.47173 * 120.00032 * 2 1 3 5 5 C 1.50701 * 109.47069 * 300.00245 * 4 2 1 6 6 C 1.38231 * 120.00179 * 90.00146 * 5 4 2 7 7 C 1.38234 * 120.00171 * 179.97438 * 6 5 4 8 8 C 1.38240 * 119.99595 * 359.97438 * 7 6 5 9 9 C 1.38231 * 120.00233 * 0.02562 * 8 7 6 10 10 C 1.38234 * 120.00171 * 359.97438 * 9 8 7 11 11 C 1.50702 * 109.47013 * 239.99890 * 2 1 3 12 12 O 1.21281 * 120.00181 * 239.99354 * 11 2 1 13 13 N 1.34783 * 119.99884 * 59.99968 * 11 2 1 14 14 C 1.46494 * 119.99764 * 179.97438 * 13 11 2 15 15 C 1.53000 * 109.46915 * 180.02562 * 14 13 11 16 16 H 1.08999 * 115.51593 * 330.41412 * 15 14 13 17 17 C 1.53004 * 117.44528 * 184.99896 * 15 14 13 18 18 H 1.09008 * 119.53443 * 5.71648 * 17 15 14 19 19 C 1.54383 * 118.12539 * 160.80589 * 17 15 14 20 20 N 1.48148 * 104.61447 * 87.19456 * 19 17 15 21 21 C 1.36933 * 127.83442 * 140.41924 * 20 19 17 22 22 H 1.08009 * 119.99696 * 195.57208 * 21 20 19 23 23 C 1.38814 * 120.00589 * 15.57031 * 21 20 19 24 24 N 1.31614 * 119.99565 * 9.09314 * 23 21 20 25 25 Si 1.86798 * 120.00039 * 189.10202 * 23 21 20 26 26 H 1.48496 * 109.47179 * 90.00043 * 25 23 21 27 27 H 1.48506 * 109.46797 * 209.99507 * 25 23 21 28 28 H 1.48495 * 109.47294 * 329.99313 * 25 23 21 29 29 C 1.48139 * 104.32500 * 320.41389 * 20 19 17 30 30 C 1.53004 * 117.44324 * 115.75901 * 15 14 13 31 31 H 1.08994 * 119.54043 * 355.88826 * 30 15 14 32 32 H 1.09001 * 109.47160 * 299.99632 * 1 2 3 33 33 H 1.09001 * 109.47074 * 60.00226 * 1 2 3 34 34 H 1.09006 * 109.46842 * 179.97438 * 1 2 3 35 35 H 1.08994 * 109.47177 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.47044 * 299.99792 * 3 2 1 37 37 H 1.09000 * 109.47109 * 59.99698 * 3 2 1 38 38 H 1.09007 * 109.46979 * 180.02562 * 4 2 1 39 39 H 1.08993 * 109.46907 * 60.00322 * 4 2 1 40 40 H 1.07999 * 119.99808 * 0.25168 * 6 5 4 41 41 H 1.07993 * 120.00429 * 179.97438 * 7 6 5 42 42 H 1.08004 * 119.99507 * 179.97438 * 8 7 6 43 43 H 1.08004 * 120.00055 * 179.97438 * 9 8 7 44 44 H 1.08001 * 120.00331 * 179.97438 * 10 9 8 45 45 H 0.97002 * 119.99896 * 0.02562 * 13 11 2 46 46 H 1.09007 * 109.47221 * 299.99907 * 14 13 11 47 47 H 1.08993 * 109.47494 * 60.00310 * 14 13 11 48 48 H 1.09001 * 110.40676 * 205.97749 * 19 17 15 49 49 H 1.08998 * 110.40741 * 328.40852 * 19 17 15 50 50 H 0.97011 * 119.99957 * 180.02562 * 24 23 21 51 51 H 1.08999 * 110.40799 * 158.37209 * 29 20 19 52 52 H 1.08999 * 110.40901 * 280.68620 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5377 -0.0109 2.4797 6 6 0.3299 -0.3763 3.0440 7 6 -0.1307 0.2750 4.1730 8 6 0.6169 1.2913 4.7380 9 6 1.8247 1.6567 4.1736 10 6 2.2853 1.0055 3.0446 11 6 2.0323 -0.7104 -1.2305 12 8 2.7297 -1.6965 -1.1192 13 7 1.7067 -0.2500 -2.4546 14 6 2.1955 -0.9403 -3.6507 15 6 1.6859 -0.2187 -4.9000 16 1 0.7295 0.2924 -4.7896 17 6 1.9923 -0.8560 -6.2568 18 1 2.4716 -1.8344 -6.2949 19 6 1.1392 -0.4292 -7.4706 20 7 1.8258 0.7689 -8.0072 21 6 2.0199 1.1086 -9.3195 22 1 2.7438 1.8667 -9.5797 23 6 1.2863 0.4786 -10.3154 24 7 0.2833 -0.3109 -9.9944 25 14 1.7227 0.7511 -12.1112 26 1 2.7128 -0.2689 -12.5403 27 1 0.4975 0.6318 -12.9419 28 1 2.3043 2.1071 -12.2789 29 6 2.2547 1.5161 -6.8021 30 6 2.7278 0.4266 -5.8159 31 1 3.7784 0.4157 -5.5261 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 3.1299 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6766 1.9563 0.8900 38 1 3.1301 -0.7208 1.2494 39 1 1.6768 -1.7489 1.2492 40 1 -0.2518 -1.1736 2.6055 41 1 -1.0745 -0.0102 4.6137 42 1 0.2568 1.8004 5.6198 43 1 2.4086 2.4511 4.6148 44 1 3.2287 1.2912 2.6034 45 1 1.1493 0.5389 -2.5436 46 1 3.2855 -0.9398 -3.6506 47 1 1.8325 -1.9680 -3.6509 48 1 1.1185 -1.2221 -8.2183 49 1 0.1271 -0.1774 -7.1541 50 1 -0.2292 -0.7515 -10.6903 51 1 3.0754 2.1909 -7.0454 52 1 1.4172 2.0734 -6.3824 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675552936.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:35 Heat of formation + Delta-G solvation = 31.360446 kcal Electronic energy + Delta-G solvation = -29046.437996 eV Core-core repulsion = 25204.833069 eV Total energy + Delta-G solvation = -3841.604926 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.68631 -39.43314 -38.74675 -36.04143 -35.01015 -33.35711 -31.64652 -31.28073 -30.73602 -27.65841 -27.46806 -27.13818 -26.95020 -25.00241 -23.07921 -22.79141 -21.38386 -21.11745 -20.23052 -19.33229 -19.01593 -17.09296 -16.93116 -16.79241 -16.22800 -15.67801 -15.38444 -15.23115 -14.96825 -14.51703 -14.24593 -14.06772 -13.94080 -13.74747 -13.46855 -13.16356 -13.01298 -12.87458 -12.72721 -12.63265 -12.40425 -12.38398 -12.05596 -11.85358 -11.37926 -11.32303 -11.29208 -11.21213 -11.14132 -11.10362 -10.85421 -10.65679 -10.31963 -10.13946 -9.83675 -9.74018 -9.40035 -9.20920 -9.13587 -8.97076 -8.93901 -8.64856 -6.88472 -5.81402 -3.15765 1.03162 1.08429 2.58358 3.07358 3.37262 3.42530 3.44332 3.48207 4.12002 4.34156 4.44994 4.45484 4.47300 4.67024 4.67283 4.71657 4.84998 4.87642 4.97683 5.13909 5.20501 5.28857 5.32200 5.37354 5.40916 5.42929 5.44783 5.50058 5.52495 5.57505 5.67309 5.74424 5.76876 5.83450 5.88596 5.90184 5.91684 5.93256 5.97215 6.15858 6.20507 6.22656 6.35237 6.36978 6.54922 6.64748 6.69320 6.69768 6.90182 7.34027 7.46656 7.51578 7.70258 8.16704 8.19414 9.09463 9.72257 10.49288 11.32887 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.032122 B = 0.001681 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.464996 B =16657.518663 C =16747.560763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.074 4.074 3 C -0.144 4.144 4 C -0.059 4.059 5 C -0.073 4.073 6 C -0.115 4.115 7 C -0.120 4.120 8 C -0.126 4.126 9 C -0.120 4.120 10 C -0.115 4.115 11 C 0.521 3.479 12 O -0.544 6.544 13 N -0.721 5.721 14 C 0.154 3.846 15 C -0.151 4.151 16 H 0.102 0.898 17 C -0.162 4.162 18 H 0.103 0.897 19 C 0.183 3.817 20 N -0.594 5.594 21 C -0.228 4.228 22 H 0.077 0.923 23 C -0.006 4.006 24 N -0.916 5.916 25 Si 0.913 3.087 26 H -0.288 1.288 27 H -0.290 1.290 28 H -0.280 1.280 29 C 0.154 3.846 30 C -0.169 4.169 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.401 0.599 46 H 0.067 0.933 47 H 0.070 0.930 48 H 0.090 0.910 49 H 0.023 0.977 50 H 0.254 0.746 51 H 0.049 0.951 52 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.017 2.583 28.893 29.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.077 4.077 3 C -0.202 4.202 4 C -0.096 4.096 5 C -0.073 4.073 6 C -0.133 4.133 7 C -0.138 4.138 8 C -0.145 4.145 9 C -0.138 4.138 10 C -0.133 4.133 11 C 0.307 3.693 12 O -0.421 6.421 13 N -0.372 5.372 14 C 0.031 3.969 15 C -0.170 4.170 16 H 0.120 0.880 17 C -0.183 4.183 18 H 0.121 0.879 19 C 0.057 3.943 20 N -0.318 5.318 21 C -0.356 4.356 22 H 0.094 0.906 23 C -0.203 4.203 24 N -0.562 5.562 25 Si 0.743 3.257 26 H -0.215 1.215 27 H -0.216 1.216 28 H -0.205 1.205 29 C 0.028 3.972 30 C -0.188 4.188 31 H 0.120 0.880 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.236 0.764 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.108 0.892 49 H 0.041 0.959 50 H 0.064 0.936 51 H 0.068 0.932 52 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 0.407 1.839 28.646 28.708 hybrid contribution -0.081 0.463 -0.957 1.066 sum 0.326 2.303 27.689 27.787 Atomic orbital electron populations 1.21968 0.92370 1.02779 1.03089 1.20700 0.97454 0.96726 0.92818 1.21964 1.01616 0.93511 1.03097 1.20450 1.01487 0.98566 0.89132 1.19854 0.94728 0.96333 0.96420 1.21105 0.95886 1.00173 0.96115 1.21151 0.99873 0.96552 0.96235 1.21142 0.95272 0.97872 1.00167 1.21149 0.96451 0.99952 0.96261 1.21108 0.99970 0.96097 0.96108 1.20471 0.80003 0.84323 0.84504 1.90697 1.38074 1.26455 1.86879 1.46043 1.53513 1.32054 1.05563 1.20868 0.98715 0.95560 0.81756 1.22529 0.99886 1.04013 0.90556 0.88031 1.24195 1.04147 0.96427 0.93483 0.87861 1.21081 0.91384 0.91286 0.90509 1.45200 1.65967 1.20305 1.00304 1.19008 1.16413 1.19893 0.80246 0.90572 1.24897 0.96544 1.00555 0.98288 1.69898 1.20323 1.34282 1.31683 0.86106 0.77275 0.77855 0.84444 1.21483 1.21646 1.20543 1.21133 0.96707 0.92099 0.87274 1.23982 0.96355 0.97649 1.00864 0.87964 0.90904 0.91939 0.91996 0.92016 0.91908 0.90918 0.90158 0.90145 0.86043 0.86199 0.86339 0.86204 0.86047 0.76419 0.91494 0.91190 0.89188 0.95920 0.93551 0.93223 0.95874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 7.78 37.16 0.29 -0.80 16 2 C -0.07 -0.65 0.64 -155.66 -0.10 -0.75 16 3 C -0.14 -1.09 7.78 37.16 0.29 -0.80 16 4 C -0.06 -0.53 3.75 -27.88 -0.10 -0.63 16 5 C -0.07 -0.58 4.01 -104.62 -0.42 -1.00 16 6 C -0.11 -0.86 7.88 -39.59 -0.31 -1.17 16 7 C -0.12 -0.82 10.05 -39.58 -0.40 -1.22 16 8 C -0.13 -0.85 10.05 -39.58 -0.40 -1.24 16 9 C -0.12 -0.82 10.05 -39.59 -0.40 -1.22 16 10 C -0.11 -0.86 7.89 -39.58 -0.31 -1.17 16 11 C 0.52 6.27 6.48 -10.98 -0.07 6.20 16 12 O -0.54 -8.61 15.98 5.56 0.09 -8.52 16 13 N -0.72 -8.14 5.34 -60.30 -0.32 -8.46 16 14 C 0.15 2.06 5.95 -4.05 -0.02 2.04 16 15 C -0.15 -2.26 5.39 -90.62 -0.49 -2.75 16 16 H 0.10 1.51 8.04 -51.93 -0.42 1.10 16 17 C -0.16 -3.02 6.85 -89.22 -0.61 -3.63 16 18 H 0.10 1.84 8.14 -51.92 -0.42 1.42 16 19 C 0.18 4.35 5.70 -2.41 -0.01 4.33 16 20 N -0.59 -15.12 3.38 -168.87 -0.57 -15.69 16 21 C -0.23 -6.31 10.35 -15.06 -0.16 -6.47 16 22 H 0.08 2.04 7.85 -52.48 -0.41 1.63 16 23 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 24 N -0.92 -26.68 10.86 55.49 0.60 -26.07 16 25 Si 0.91 21.86 29.56 -169.99 -5.03 16.83 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 29 C 0.15 3.17 7.04 -2.41 -0.02 3.16 16 30 C -0.17 -2.92 6.74 -89.22 -0.60 -3.53 16 31 H 0.10 1.65 8.12 -51.93 -0.42 1.23 16 32 H 0.07 0.51 6.17 -51.93 -0.32 0.19 16 33 H 0.06 0.43 7.56 -51.93 -0.39 0.04 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.44 7.56 -51.93 -0.39 0.05 16 37 H 0.07 0.51 6.18 -51.93 -0.32 0.19 16 38 H 0.08 0.78 8.04 -51.93 -0.42 0.36 16 39 H 0.08 0.78 8.04 -51.93 -0.42 0.36 16 40 H 0.12 0.79 8.03 -52.49 -0.42 0.37 16 41 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 42 H 0.12 0.58 8.06 -52.48 -0.42 0.15 16 43 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 44 H 0.12 0.79 8.03 -52.49 -0.42 0.37 16 45 H 0.40 3.73 7.24 -40.82 -0.30 3.44 16 46 H 0.07 0.95 7.94 -51.93 -0.41 0.54 16 47 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 48 H 0.09 2.40 6.51 -51.93 -0.34 2.06 16 49 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 50 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 51 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 52 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 411.02 15.07 6.19 6.19 Total: -1.00 -31.93 411.02 -11.74 -43.67 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -8.76 Total: 2.96 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -3.94 Total: -10.92 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: -0.29 Total: -50.22 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.09 Total: -8.52 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.93 -11.74 -43.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675552936.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.029 kcal (2) G-P(sol) polarization free energy of solvation -31.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds