Wall clock time and date at job start Wed Apr 1 2020 02:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47092 * 2 1 4 4 H 1.09002 * 109.47162 * 305.00898 * 3 2 1 5 5 C 1.53002 * 109.47299 * 65.01559 * 3 2 1 6 6 C 1.53001 * 109.46905 * 185.01619 * 3 2 1 7 7 H 1.08991 * 109.47445 * 57.26597 * 6 3 2 8 8 C 1.50706 * 109.47013 * 177.27282 * 6 3 2 9 9 O 1.21280 * 120.00128 * 121.52654 * 8 6 3 10 10 N 1.34779 * 119.99670 * 301.52008 * 8 6 3 11 11 C 1.46494 * 119.99861 * 184.83856 * 10 8 6 12 12 H 1.09001 * 115.51692 * 9.58769 * 11 10 8 13 13 C 1.53001 * 117.44507 * 224.24310 * 11 10 8 14 14 H 1.09001 * 119.53921 * 4.11979 * 13 11 10 15 15 C 1.57688 * 116.11325 * 161.63778 * 13 11 10 16 16 N 1.48149 * 104.67168 * 87.31173 * 15 13 11 17 17 C 1.36941 * 127.83856 * 139.77744 * 16 15 13 18 18 H 1.07995 * 119.99823 * 189.65808 * 17 16 15 19 19 C 1.38809 * 119.99983 * 9.65630 * 17 16 15 20 20 N 1.31624 * 120.00293 * 18.01792 * 19 17 16 21 21 Si 1.86802 * 120.00151 * 198.01412 * 19 17 16 22 22 H 1.48505 * 109.46741 * 94.99034 * 21 19 17 23 23 H 1.48496 * 109.47388 * 214.99177 * 21 19 17 24 24 H 1.48502 * 109.47172 * 334.99545 * 21 19 17 25 25 C 1.48144 * 104.32558 * 319.77336 * 16 15 13 26 26 C 1.53005 * 117.44434 * 155.00473 * 11 10 8 27 27 H 1.09005 * 119.53511 * 355.88426 * 26 11 10 28 28 C 1.50702 * 109.47144 * 297.26711 * 6 3 2 29 29 C 1.38238 * 119.99930 * 289.38379 * 28 6 3 30 30 C 1.38235 * 119.99765 * 179.80785 * 29 28 6 31 31 C 1.38237 * 120.00085 * 0.39656 * 30 29 28 32 32 C 1.38232 * 119.99760 * 359.85323 * 31 30 29 33 33 C 1.38232 * 120.00231 * 359.96147 * 32 31 30 34 34 H 1.09001 * 109.47293 * 300.00797 * 1 2 3 35 35 H 1.09004 * 109.47006 * 60.00175 * 1 2 3 36 36 H 1.08997 * 109.47293 * 179.97438 * 1 2 3 37 37 H 1.08992 * 109.47319 * 240.00020 * 2 1 3 38 38 H 1.09007 * 109.46778 * 119.99351 * 2 1 3 39 39 H 1.09001 * 109.46961 * 172.15739 * 5 3 2 40 40 H 1.09000 * 109.46754 * 292.15507 * 5 3 2 41 41 H 1.08991 * 109.47457 * 52.15693 * 5 3 2 42 42 H 0.96999 * 120.00010 * 4.84839 * 10 8 6 43 43 H 1.09002 * 110.92482 * 328.23485 * 15 13 11 44 44 H 1.09007 * 109.93666 * 205.88857 * 15 13 11 45 45 H 0.96996 * 120.00171 * 180.02562 * 20 19 17 46 46 H 1.09001 * 110.40451 * 280.80739 * 25 16 15 47 47 H 1.08996 * 110.51113 * 158.42291 * 25 16 15 48 48 H 1.08002 * 120.00178 * 359.97438 * 29 28 6 49 49 H 1.08001 * 120.00397 * 180.22613 * 30 29 28 50 50 H 1.07997 * 119.99965 * 179.83313 * 31 30 29 51 51 H 1.07998 * 119.99912 * 179.97438 * 32 31 30 52 52 H 1.08002 * 119.99828 * 180.02562 * 33 32 31 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9816 -0.8417 5 6 1.6356 2.1265 1.3075 6 6 3.5648 1.4443 -0.1261 7 1 3.8550 0.9145 -1.0333 8 6 4.0616 2.8655 -0.1935 9 8 4.8518 3.2715 0.6321 10 7 3.6278 3.6853 -1.1714 11 6 4.1893 5.0322 -1.3009 12 1 5.0604 5.2395 -0.6794 13 6 3.2119 6.1827 -1.5498 14 1 2.1399 5.9855 -1.5558 15 6 3.7530 7.6317 -1.2430 16 7 4.4126 8.0597 -2.4987 17 6 4.3804 9.2967 -3.0851 18 1 4.7767 9.4330 -4.0804 19 6 3.8383 10.3756 -2.4002 20 7 3.6832 10.3156 -1.0945 21 14 3.3289 11.9127 -3.3316 22 1 1.8801 11.8410 -3.6500 23 1 3.5928 13.1097 -2.4933 24 1 4.1085 12.0091 -4.5918 25 6 5.1149 6.8458 -2.9760 26 6 4.1362 5.6885 -2.6820 27 1 3.7527 5.1230 -3.5313 28 6 4.1687 0.7574 1.0716 29 6 4.1259 1.3662 2.3120 30 6 4.6764 0.7344 3.4113 31 6 5.2769 -0.5026 3.2688 32 6 5.3243 -1.1089 2.0275 33 6 4.7704 -0.4788 0.9289 34 1 -0.3634 0.5140 0.8899 35 1 -0.3633 0.5138 -0.8900 36 1 -0.3634 -1.0276 -0.0005 37 1 1.8933 -0.5138 -0.8899 38 1 1.8933 -0.5138 0.8901 39 1 2.1145 3.1037 1.3696 40 1 0.5529 2.2502 1.3330 41 1 1.9512 1.5130 2.1513 42 1 2.9437 3.3836 -1.7894 43 1 4.4715 7.6135 -0.4235 44 1 2.9223 8.2960 -1.0046 45 1 3.3041 11.0694 -0.6160 46 1 6.0459 6.7048 -2.4270 47 1 5.3120 6.9144 -4.0458 48 1 3.6600 2.3343 2.4226 49 1 4.6397 1.2082 4.3811 50 1 5.7094 -0.9950 4.1272 51 1 5.7938 -2.0751 1.9161 52 1 4.8071 -0.9528 -0.0409 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690524138.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:11 Heat of formation + Delta-G solvation = 40.916105 kcal Electronic energy + Delta-G solvation = -30094.773164 eV Core-core repulsion = 26253.582602 eV Total energy + Delta-G solvation = -3841.190562 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -40.85126 -39.12443 -38.06768 -36.69959 -34.47361 -32.69557 -32.30840 -31.13161 -30.36355 -29.42529 -27.70148 -27.02244 -25.63785 -24.45201 -22.57211 -22.48274 -21.44584 -20.76950 -20.30882 -19.57442 -19.28222 -17.13249 -16.82153 -16.70586 -16.28028 -15.90357 -15.55252 -14.92709 -14.70526 -14.66471 -14.22005 -13.89393 -13.68468 -13.60420 -13.36181 -13.23040 -12.94163 -12.75807 -12.57608 -12.30183 -12.24981 -12.21938 -11.93197 -11.60335 -11.52179 -11.44449 -11.20010 -10.99853 -10.96164 -10.85727 -10.82960 -10.61941 -10.35131 -10.19891 -10.16762 -9.73230 -9.65872 -9.20443 -8.90607 -8.75432 -8.70483 -8.32063 -6.94188 -5.82348 -3.10409 1.25278 1.37551 2.63759 3.11616 3.38603 3.44385 3.46492 3.74883 4.25116 4.30858 4.43376 4.48879 4.57107 4.77482 4.80466 4.90759 4.94549 5.03461 5.07195 5.14304 5.24572 5.27252 5.35034 5.37102 5.39469 5.40465 5.46400 5.53820 5.59558 5.69905 5.75647 5.78160 5.80032 5.82183 5.86951 5.89151 5.98923 6.04459 6.09371 6.13883 6.23829 6.37043 6.46550 6.49980 6.55052 6.66226 6.81516 6.85204 6.93265 7.32709 7.49504 7.58970 7.70382 8.16505 8.29921 9.08558 9.73033 10.48464 11.32377 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017815 B = 0.002319 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.344618 B =12073.125079 C =12603.303260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.078 4.078 4 H 0.078 0.922 5 C -0.160 4.160 6 C -0.066 4.066 7 H 0.103 0.897 8 C 0.521 3.479 9 O -0.527 6.527 10 N -0.698 5.698 11 C 0.096 3.904 12 H 0.130 0.870 13 C -0.181 4.181 14 H 0.105 0.895 15 C 0.186 3.814 16 N -0.593 5.593 17 C -0.229 4.229 18 H 0.080 0.920 19 C -0.006 4.006 20 N -0.910 5.910 21 Si 0.909 3.091 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.157 3.843 26 C -0.184 4.184 27 H 0.101 0.899 28 C -0.064 4.064 29 C -0.078 4.078 30 C -0.128 4.128 31 C -0.121 4.121 32 C -0.129 4.129 33 C -0.112 4.112 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.397 0.603 43 H 0.029 0.971 44 H 0.089 0.911 45 H 0.255 0.745 46 H 0.027 0.973 47 H 0.052 0.948 48 H 0.129 0.871 49 H 0.119 0.881 50 H 0.117 0.883 51 H 0.118 0.882 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.286 -25.862 4.329 26.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.097 4.097 4 H 0.096 0.904 5 C -0.217 4.217 6 C -0.087 4.087 7 H 0.121 0.879 8 C 0.307 3.693 9 O -0.402 6.402 10 N -0.346 5.346 11 C -0.010 4.010 12 H 0.148 0.852 13 C -0.203 4.203 14 H 0.123 0.877 15 C 0.059 3.941 16 N -0.316 5.316 17 C -0.356 4.356 18 H 0.097 0.903 19 C -0.203 4.203 20 N -0.556 5.556 21 Si 0.739 3.261 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.205 1.205 25 C 0.030 3.970 26 C -0.205 4.205 27 H 0.119 0.881 28 C -0.065 4.065 29 C -0.096 4.096 30 C -0.146 4.146 31 C -0.139 4.139 32 C -0.147 4.147 33 C -0.130 4.130 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.231 0.769 43 H 0.047 0.953 44 H 0.108 0.892 45 H 0.065 0.935 46 H 0.044 0.956 47 H 0.070 0.930 48 H 0.147 0.853 49 H 0.137 0.863 50 H 0.135 0.865 51 H 0.136 0.864 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.731 -25.280 4.948 26.029 hybrid contribution -0.645 0.592 -0.902 1.257 sum -4.376 -24.688 4.046 25.397 Atomic orbital electron populations 1.21811 0.95649 1.01555 1.02075 1.21573 0.95961 0.95445 1.02413 1.21141 0.91620 0.97422 0.99509 0.90395 1.22223 1.01572 1.00727 0.97211 1.20438 0.96503 0.93288 0.98467 0.87892 1.20313 0.81249 0.86912 0.80842 1.90737 1.34374 1.76367 1.38751 1.45394 1.42154 1.14261 1.32836 1.21872 0.99791 0.79963 0.99381 0.85194 1.25400 0.96035 0.96200 1.02661 0.87710 1.21642 0.97038 0.87414 0.87975 1.45183 1.55232 1.06203 1.25002 1.19003 1.35712 0.83421 0.97509 0.90271 1.24796 1.02477 0.97666 0.95358 1.69972 1.48744 1.31509 1.05383 0.86153 0.78708 0.82371 0.78910 1.21563 1.21779 1.20496 1.21109 0.92537 0.85561 0.97824 1.24261 1.04052 1.00929 0.91246 0.88069 1.19206 0.98946 0.94582 0.93745 1.21223 0.97338 0.99229 0.91816 1.21156 0.99035 0.95508 0.98865 1.21118 0.99634 0.95756 0.97358 1.21012 1.00689 1.00053 0.92925 1.20949 0.98452 0.94934 0.98704 0.92396 0.92712 0.92847 0.91921 0.91418 0.92180 0.92146 0.91377 0.76902 0.95349 0.89230 0.93528 0.95580 0.92953 0.85337 0.86261 0.86481 0.86380 0.86404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.67 37.16 0.36 -0.64 16 2 C -0.12 -0.81 5.09 -26.73 -0.14 -0.95 16 3 C -0.08 -0.64 2.11 -90.62 -0.19 -0.83 16 4 H 0.08 0.58 7.30 -51.93 -0.38 0.20 16 5 C -0.16 -1.50 7.08 37.16 0.26 -1.24 16 6 C -0.07 -0.65 2.31 -92.92 -0.21 -0.86 16 7 H 0.10 0.84 7.91 -51.93 -0.41 0.42 16 8 C 0.52 7.03 5.65 -10.98 -0.06 6.97 16 9 O -0.53 -9.27 13.92 5.56 0.08 -9.20 16 10 N -0.70 -9.01 5.47 -53.80 -0.29 -9.30 16 11 C 0.10 1.59 5.91 -67.93 -0.40 1.19 16 12 H 0.13 2.49 7.43 -51.93 -0.39 2.11 16 13 C -0.18 -3.40 7.34 -87.38 -0.64 -4.04 16 14 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 15 C 0.19 4.48 5.86 -0.57 0.00 4.48 16 16 N -0.59 -15.16 3.39 -166.74 -0.56 -15.73 16 17 C -0.23 -6.36 10.33 -15.06 -0.16 -6.52 16 18 H 0.08 2.13 7.89 -52.49 -0.41 1.71 16 19 C -0.01 -0.16 5.31 -17.43 -0.09 -0.25 16 20 N -0.91 -26.74 10.98 55.49 0.61 -26.13 16 21 Si 0.91 21.88 29.59 -169.99 -5.03 16.85 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C 0.16 3.27 7.04 -2.41 -0.02 3.26 16 26 C -0.18 -3.19 6.98 -89.22 -0.62 -3.82 16 27 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 28 C -0.06 -0.70 3.39 -104.62 -0.35 -1.05 16 29 C -0.08 -0.93 5.91 -39.58 -0.23 -1.17 16 30 C -0.13 -1.37 10.05 -39.58 -0.40 -1.77 16 31 C -0.12 -1.16 10.05 -39.58 -0.40 -1.55 16 32 C -0.13 -1.19 10.05 -39.59 -0.40 -1.59 16 33 C -0.11 -1.08 9.63 -39.59 -0.38 -1.46 16 34 H 0.06 0.39 6.75 -51.93 -0.35 0.04 16 35 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.53 7.44 -51.93 -0.39 0.14 16 39 H 0.06 0.69 6.47 -51.93 -0.34 0.35 16 40 H 0.06 0.50 6.96 -51.93 -0.36 0.14 16 41 H 0.07 0.64 5.72 -51.93 -0.30 0.35 16 42 H 0.40 4.00 7.98 -40.82 -0.33 3.68 16 43 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.09 2.41 6.42 -51.93 -0.33 2.07 16 45 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 46 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 48 H 0.13 1.66 5.22 -52.49 -0.27 1.39 16 49 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 50 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 51 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 52 H 0.12 0.90 7.97 -52.49 -0.42 0.48 16 LS Contribution 403.49 15.07 6.08 6.08 Total: -1.00 -32.13 403.49 -11.66 -43.79 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -8.46 Total: 5.48 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -4.08 Total: -11.84 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: -0.25 Total: -51.16 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.08 Total: -9.20 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.13 -11.66 -43.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690524138.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.707 kcal (2) G-P(sol) polarization free energy of solvation -32.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds