Wall clock time and date at job start Wed Apr 1 2020 02:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47092 * 2 1 4 4 H 1.09002 * 109.47162 * 305.00898 * 3 2 1 5 5 C 1.53002 * 109.47299 * 65.01559 * 3 2 1 6 6 C 1.53001 * 109.46905 * 185.01619 * 3 2 1 7 7 H 1.08991 * 109.47445 * 57.26597 * 6 3 2 8 8 C 1.50706 * 109.47013 * 177.27282 * 6 3 2 9 9 O 1.21280 * 120.00128 * 121.52654 * 8 6 3 10 10 N 1.34779 * 119.99670 * 301.52008 * 8 6 3 11 11 C 1.46494 * 119.99861 * 184.83856 * 10 8 6 12 12 H 1.09001 * 115.51692 * 9.58769 * 11 10 8 13 13 C 1.53001 * 117.44507 * 224.24310 * 11 10 8 14 14 H 1.09001 * 119.53921 * 4.11979 * 13 11 10 15 15 C 1.57688 * 116.11325 * 161.63778 * 13 11 10 16 16 N 1.48149 * 104.67168 * 87.31173 * 15 13 11 17 17 C 1.36941 * 127.83856 * 139.77744 * 16 15 13 18 18 H 1.07995 * 119.99823 * 189.65808 * 17 16 15 19 19 C 1.38809 * 119.99983 * 9.65630 * 17 16 15 20 20 N 1.31624 * 120.00293 * 18.01792 * 19 17 16 21 21 Si 1.86802 * 120.00151 * 198.01412 * 19 17 16 22 22 H 1.48505 * 109.46741 * 94.99034 * 21 19 17 23 23 H 1.48496 * 109.47388 * 214.99177 * 21 19 17 24 24 H 1.48502 * 109.47172 * 334.99545 * 21 19 17 25 25 C 1.48144 * 104.32558 * 319.77336 * 16 15 13 26 26 C 1.53005 * 117.44434 * 155.00473 * 11 10 8 27 27 H 1.09005 * 119.53511 * 355.88426 * 26 11 10 28 28 C 1.50702 * 109.47144 * 297.26711 * 6 3 2 29 29 C 1.38238 * 119.99930 * 289.38379 * 28 6 3 30 30 C 1.38235 * 119.99765 * 179.80785 * 29 28 6 31 31 C 1.38237 * 120.00085 * 0.39656 * 30 29 28 32 32 C 1.38232 * 119.99760 * 359.85323 * 31 30 29 33 33 C 1.38232 * 120.00231 * 359.96147 * 32 31 30 34 34 H 1.09001 * 109.47293 * 300.00797 * 1 2 3 35 35 H 1.09004 * 109.47006 * 60.00175 * 1 2 3 36 36 H 1.08997 * 109.47293 * 179.97438 * 1 2 3 37 37 H 1.08992 * 109.47319 * 240.00020 * 2 1 3 38 38 H 1.09007 * 109.46778 * 119.99351 * 2 1 3 39 39 H 1.09001 * 109.46961 * 172.15739 * 5 3 2 40 40 H 1.09000 * 109.46754 * 292.15507 * 5 3 2 41 41 H 1.08991 * 109.47457 * 52.15693 * 5 3 2 42 42 H 0.96999 * 120.00010 * 4.84839 * 10 8 6 43 43 H 1.09002 * 110.92482 * 328.23485 * 15 13 11 44 44 H 1.09007 * 109.93666 * 205.88857 * 15 13 11 45 45 H 0.96996 * 120.00171 * 180.02562 * 20 19 17 46 46 H 1.09001 * 110.40451 * 280.80739 * 25 16 15 47 47 H 1.08996 * 110.51113 * 158.42291 * 25 16 15 48 48 H 1.08002 * 120.00178 * 359.97438 * 29 28 6 49 49 H 1.08001 * 120.00397 * 180.22613 * 30 29 28 50 50 H 1.07997 * 119.99965 * 179.83313 * 31 30 29 51 51 H 1.07998 * 119.99912 * 179.97438 * 32 31 30 52 52 H 1.08002 * 119.99828 * 180.02562 * 33 32 31 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9816 -0.8417 5 6 1.6356 2.1265 1.3075 6 6 3.5648 1.4443 -0.1261 7 1 3.8550 0.9145 -1.0333 8 6 4.0616 2.8655 -0.1935 9 8 4.8518 3.2715 0.6321 10 7 3.6278 3.6853 -1.1714 11 6 4.1893 5.0322 -1.3009 12 1 5.0604 5.2395 -0.6794 13 6 3.2119 6.1827 -1.5498 14 1 2.1399 5.9855 -1.5558 15 6 3.7530 7.6317 -1.2430 16 7 4.4126 8.0597 -2.4987 17 6 4.3804 9.2967 -3.0851 18 1 4.7767 9.4330 -4.0804 19 6 3.8383 10.3756 -2.4002 20 7 3.6832 10.3156 -1.0945 21 14 3.3289 11.9127 -3.3316 22 1 1.8801 11.8410 -3.6500 23 1 3.5928 13.1097 -2.4933 24 1 4.1085 12.0091 -4.5918 25 6 5.1149 6.8458 -2.9760 26 6 4.1362 5.6885 -2.6820 27 1 3.7527 5.1230 -3.5313 28 6 4.1687 0.7574 1.0716 29 6 4.1259 1.3662 2.3120 30 6 4.6764 0.7344 3.4113 31 6 5.2769 -0.5026 3.2688 32 6 5.3243 -1.1089 2.0275 33 6 4.7704 -0.4788 0.9289 34 1 -0.3634 0.5140 0.8899 35 1 -0.3633 0.5138 -0.8900 36 1 -0.3634 -1.0276 -0.0005 37 1 1.8933 -0.5138 -0.8899 38 1 1.8933 -0.5138 0.8901 39 1 2.1145 3.1037 1.3696 40 1 0.5529 2.2502 1.3330 41 1 1.9512 1.5130 2.1513 42 1 2.9437 3.3836 -1.7894 43 1 4.4715 7.6135 -0.4235 44 1 2.9223 8.2960 -1.0046 45 1 3.3041 11.0694 -0.6160 46 1 6.0459 6.7048 -2.4270 47 1 5.3120 6.9144 -4.0458 48 1 3.6600 2.3343 2.4226 49 1 4.6397 1.2082 4.3811 50 1 5.7094 -0.9950 4.1272 51 1 5.7938 -2.0751 1.9161 52 1 4.8071 -0.9528 -0.0409 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690524138.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:09 Heat of formation + Delta-G solvation = 23.485769 kcal Electronic energy + Delta-G solvation = -30095.529000 eV Core-core repulsion = 26253.582602 eV Total energy + Delta-G solvation = -3841.946398 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -41.80723 -40.41742 -39.26090 -37.46096 -36.08804 -34.29873 -33.09393 -32.12095 -31.87399 -30.14778 -28.80034 -28.59995 -27.48173 -25.20498 -23.77670 -23.28672 -22.66937 -21.96626 -21.58609 -20.91619 -20.39206 -18.86326 -18.10260 -17.72866 -17.34015 -16.76426 -16.66258 -16.33156 -15.73541 -15.60505 -15.51549 -15.10432 -14.88444 -14.70833 -14.66349 -14.35252 -14.03693 -13.82317 -13.71148 -13.40179 -13.27491 -13.22557 -12.93059 -12.89783 -12.84620 -12.72758 -12.62680 -12.16572 -12.08818 -12.03767 -11.88327 -11.85004 -11.69425 -11.65590 -11.44581 -11.29976 -10.86947 -10.76219 -10.66670 -9.70852 -9.65620 -9.51941 -9.00205 -7.94773 -5.25507 0.48977 0.60776 1.46204 1.48230 1.55633 1.57822 1.99053 2.48033 2.86056 2.97059 3.24230 3.47330 3.59348 3.69632 3.83483 3.87972 3.93735 4.08014 4.09166 4.14546 4.15238 4.23745 4.35389 4.35689 4.42433 4.43606 4.61574 4.66654 4.69562 4.72330 4.80979 4.81598 4.86998 4.90905 4.97076 5.03040 5.14663 5.19405 5.21861 5.25268 5.26457 5.27823 5.39505 5.42918 5.47703 5.54172 5.56071 5.61337 5.63692 5.70542 5.77324 6.11891 6.19225 6.54975 6.97050 7.25517 7.66185 8.43403 9.19755 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017815 B = 0.002319 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.344618 B =12073.125079 C =12603.303260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.073 4.073 4 H 0.093 0.907 5 C -0.157 4.157 6 C -0.055 4.055 7 H 0.133 0.867 8 C 0.520 3.480 9 O -0.573 6.573 10 N -0.682 5.682 11 C 0.117 3.883 12 H 0.100 0.900 13 C -0.185 4.185 14 H 0.127 0.873 15 C 0.187 3.813 16 N -0.616 5.616 17 C -0.241 4.241 18 H 0.087 0.913 19 C -0.064 4.064 20 N -0.947 5.947 21 Si 0.979 3.021 22 H -0.285 1.285 23 H -0.297 1.297 24 H -0.264 1.264 25 C 0.148 3.852 26 C -0.159 4.159 27 H 0.141 0.859 28 C -0.076 4.076 29 C -0.099 4.099 30 C -0.146 4.146 31 C -0.126 4.126 32 C -0.131 4.131 33 C -0.115 4.115 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.058 0.942 39 H 0.031 0.969 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.417 0.583 43 H -0.006 1.006 44 H 0.055 0.945 45 H 0.250 0.750 46 H 0.017 0.983 47 H 0.068 0.932 48 H 0.106 0.894 49 H 0.123 0.877 50 H 0.137 0.863 51 H 0.145 0.855 52 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.070 -29.013 1.838 29.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.092 4.092 4 H 0.111 0.889 5 C -0.214 4.214 6 C -0.076 4.076 7 H 0.151 0.849 8 C 0.308 3.692 9 O -0.451 6.451 10 N -0.333 5.333 11 C 0.009 3.991 12 H 0.118 0.882 13 C -0.206 4.206 14 H 0.145 0.855 15 C 0.061 3.939 16 N -0.340 5.340 17 C -0.369 4.369 18 H 0.104 0.896 19 C -0.258 4.258 20 N -0.594 5.594 21 Si 0.807 3.193 22 H -0.212 1.212 23 H -0.224 1.224 24 H -0.189 1.189 25 C 0.022 3.978 26 C -0.179 4.179 27 H 0.159 0.841 28 C -0.076 4.076 29 C -0.117 4.117 30 C -0.164 4.164 31 C -0.144 4.144 32 C -0.149 4.149 33 C -0.132 4.132 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.077 0.923 39 H 0.050 0.950 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.254 0.746 43 H 0.012 0.988 44 H 0.074 0.926 45 H 0.059 0.941 46 H 0.035 0.965 47 H 0.086 0.914 48 H 0.124 0.876 49 H 0.141 0.859 50 H 0.155 0.845 51 H 0.162 0.838 52 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.529 -28.484 2.419 28.943 hybrid contribution -0.302 1.535 -0.025 1.565 sum -4.831 -26.949 2.394 27.483 Atomic orbital electron populations 1.21812 0.95281 1.02019 1.02000 1.21512 0.96177 0.94174 1.02818 1.21165 0.90410 0.98579 0.99008 0.88883 1.22179 1.01783 0.99288 0.98192 1.20471 0.97368 0.90353 0.99400 0.84907 1.21053 0.80226 0.88237 0.79698 1.90731 1.36533 1.77451 1.40401 1.45180 1.42388 1.12407 1.33288 1.21359 0.97995 0.81295 0.98415 0.88214 1.25057 0.97414 0.93582 1.04550 0.85540 1.21371 0.95063 0.90404 0.87079 1.45484 1.56275 1.06976 1.25278 1.19419 1.35089 0.84596 0.97805 0.89574 1.25679 1.03000 1.01009 0.96114 1.70168 1.50037 1.32241 1.06993 0.85057 0.78259 0.78135 0.77880 1.21217 1.22391 1.18886 1.21279 0.92775 0.85282 0.98432 1.24168 1.01699 0.99713 0.92353 0.84102 1.19358 0.99500 0.95333 0.93459 1.21189 0.98539 0.98846 0.93164 1.21340 0.99681 0.96455 0.98926 1.21409 0.99149 0.95223 0.98628 1.21394 1.00040 1.00966 0.92503 1.21273 0.97519 0.94353 1.00093 0.93152 0.92131 0.92157 0.90130 0.92347 0.94962 0.91279 0.91955 0.74554 0.98781 0.92608 0.94117 0.96508 0.91403 0.87551 0.85938 0.84486 0.83759 0.83769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.67 71.98 0.70 -0.89 16 2 C -0.11 -1.19 5.09 30.59 0.16 -1.03 16 3 C -0.07 -1.02 2.11 -10.79 -0.02 -1.04 16 4 H 0.09 1.05 7.30 -2.39 -0.02 1.03 16 5 C -0.16 -2.91 7.08 71.98 0.51 -2.40 16 6 C -0.05 -0.96 2.31 -12.28 -0.03 -0.99 16 7 H 0.13 1.57 7.91 -2.39 -0.02 1.55 16 8 C 0.52 13.55 5.65 87.66 0.50 14.04 16 9 O -0.57 -20.73 13.92 -3.03 -0.04 -20.77 16 10 N -0.68 -16.26 5.47 -442.52 -2.42 -18.68 16 11 C 0.12 3.80 5.91 44.99 0.27 4.07 16 12 H 0.10 3.98 7.43 -2.39 -0.02 3.96 16 13 C -0.18 -6.85 7.34 -8.70 -0.06 -6.92 16 14 H 0.13 4.17 8.14 -2.39 -0.02 4.15 16 15 C 0.19 9.49 5.86 87.72 0.51 10.00 16 16 N -0.62 -32.19 3.39 -681.43 -2.31 -34.50 16 17 C -0.24 -13.57 10.33 84.03 0.87 -12.70 16 18 H 0.09 4.61 7.89 -2.91 -0.02 4.58 16 19 C -0.06 -3.69 5.31 84.86 0.45 -3.24 16 20 N -0.95 -58.05 10.98 21.65 0.24 -57.81 16 21 Si 0.98 45.69 29.59 68.60 2.03 47.72 16 22 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 24 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 25 C 0.15 6.12 7.04 86.53 0.61 6.73 16 26 C -0.16 -5.19 6.98 -9.89 -0.07 -5.26 16 27 H 0.14 3.59 8.14 -2.38 -0.02 3.57 16 28 C -0.08 -1.56 3.39 -19.87 -0.07 -1.62 16 29 C -0.10 -2.44 5.91 22.27 0.13 -2.30 16 30 C -0.15 -3.21 10.05 22.27 0.22 -2.98 16 31 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 32 C -0.13 -2.09 10.05 22.27 0.22 -1.87 16 33 C -0.11 -1.90 9.63 22.27 0.21 -1.68 16 34 H 0.05 0.59 6.75 -2.39 -0.02 0.57 16 35 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 36 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.06 0.77 7.44 -2.38 -0.02 0.75 16 39 H 0.03 0.76 6.47 -2.39 -0.02 0.75 16 40 H 0.07 1.12 6.96 -2.39 -0.02 1.10 16 41 H 0.06 1.22 5.72 -2.39 -0.01 1.20 16 42 H 0.42 6.81 7.98 -92.71 -0.74 6.07 16 43 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 44 H 0.06 3.17 6.42 -2.38 -0.02 3.16 16 45 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 46 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 48 H 0.11 3.00 5.22 -2.91 -0.02 2.99 16 49 H 0.12 2.42 8.06 -2.91 -0.02 2.39 16 50 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 51 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 52 H 0.14 1.57 7.97 -2.91 -0.02 1.54 16 Total: -1.00 -74.42 403.49 3.00 -71.42 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: 0.17 Total: 24.75 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: 5.33 Total: -12.13 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -4.49 Total: -110.99 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.04 Total: -20.77 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -74.42 3.00 -71.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690524138.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.906 kcal (2) G-P(sol) polarization free energy of solvation -74.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds