Wall clock time and date at job start Wed Apr 1 2020 02:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47190 * 2 1 4 4 H 1.09005 * 109.47325 * 53.16829 * 3 2 1 5 5 C 1.53005 * 109.47110 * 173.16658 * 3 2 1 6 6 C 1.52998 * 109.47534 * 293.16696 * 3 2 1 7 7 H 1.09002 * 109.46911 * 307.25042 * 6 3 2 8 8 C 1.50696 * 109.47651 * 187.24421 * 6 3 2 9 9 O 1.21280 * 119.99846 * 266.99290 * 8 6 3 10 10 N 1.34773 * 119.99963 * 86.99000 * 8 6 3 11 11 C 1.46505 * 119.99652 * 174.79803 * 10 8 6 12 12 H 1.08993 * 115.51974 * 350.41574 * 11 10 8 13 13 C 1.53003 * 117.43883 * 204.99942 * 11 10 8 14 14 H 1.08995 * 119.54371 * 4.11672 * 13 11 10 15 15 C 1.54386 * 118.12104 * 159.21477 * 13 11 10 16 16 N 1.51832 * 102.86898 * 88.01923 * 15 13 11 17 17 C 1.36939 * 127.61221 * 140.54269 * 16 15 13 18 18 H 1.07994 * 119.99809 * 200.93784 * 17 16 15 19 19 C 1.38809 * 119.99726 * 20.93791 * 17 16 15 20 20 N 1.31614 * 120.00440 * 7.16004 * 19 17 16 21 21 Si 1.86798 * 119.99815 * 187.16220 * 19 17 16 22 22 H 1.48497 * 109.47485 * 89.99813 * 21 19 17 23 23 H 1.48504 * 109.47144 * 210.00123 * 21 19 17 24 24 H 1.48507 * 109.47204 * 329.99843 * 21 19 17 25 25 C 1.48147 * 104.54682 * 320.27339 * 16 15 13 26 26 C 1.53007 * 117.43754 * 135.76290 * 11 10 8 27 27 H 1.08994 * 119.54313 * 355.87840 * 26 11 10 28 28 C 1.50708 * 109.46739 * 67.24204 * 6 3 2 29 29 C 1.38238 * 119.99796 * 235.59344 * 28 6 3 30 30 C 1.38227 * 119.99851 * 180.02562 * 29 28 6 31 31 C 1.38239 * 119.99984 * 359.97438 * 30 29 28 32 32 C 1.38231 * 120.00006 * 359.97438 * 31 30 29 33 33 C 1.38229 * 119.99897 * 55.57337 * 28 6 3 34 34 H 1.08993 * 109.47226 * 191.52494 * 1 2 3 35 35 H 1.09006 * 109.47002 * 311.52813 * 1 2 3 36 36 H 1.09000 * 109.46986 * 71.52478 * 1 2 3 37 37 H 1.08998 * 109.47306 * 239.99717 * 2 1 3 38 38 H 1.09000 * 109.46867 * 119.99871 * 2 1 3 39 39 H 1.09007 * 109.47231 * 185.31372 * 5 3 2 40 40 H 1.08997 * 109.47019 * 305.31234 * 5 3 2 41 41 H 1.08997 * 109.46724 * 65.31547 * 5 3 2 42 42 H 0.96998 * 120.00300 * 354.80047 * 10 8 6 43 43 H 1.09000 * 110.40850 * 205.97215 * 15 13 11 44 44 H 1.09004 * 110.40616 * 328.40688 * 15 13 11 45 45 H 0.97000 * 120.00680 * 180.02562 * 20 19 17 46 46 H 1.08997 * 110.40326 * 281.07202 * 25 16 15 47 47 H 1.09002 * 110.40198 * 158.64494 * 25 16 15 48 48 H 1.07992 * 120.00144 * 359.97438 * 29 28 6 49 49 H 1.08002 * 120.00183 * 179.97438 * 30 29 28 50 50 H 1.08002 * 120.00106 * 179.69780 * 31 30 29 51 51 H 1.08000 * 120.00039 * 179.97438 * 32 31 30 52 52 H 1.08002 * 119.99974 * 359.97438 * 33 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5803 1.9904 0.8226 5 6 3.5604 1.4458 0.1716 6 6 1.6751 2.1125 -1.3261 7 1 2.0250 1.4952 -2.1535 8 6 2.3277 3.4688 -1.4001 9 8 1.7240 4.4533 -1.0297 10 7 3.5823 3.5878 -1.8778 11 6 4.1751 4.9155 -2.0567 12 1 3.4905 5.7553 -1.9382 13 6 5.2900 5.0558 -3.0951 14 1 5.5619 4.1985 -3.7109 15 6 5.5903 6.4629 -3.6549 16 7 6.6009 7.0125 -2.6640 17 6 7.7103 7.7684 -2.9342 18 1 8.5186 7.8156 -2.2195 19 6 7.7959 8.4739 -4.1265 20 7 6.7575 8.5316 -4.9331 21 14 9.3850 9.3414 -4.5864 22 1 10.2488 8.4145 -5.3609 23 1 9.0756 10.5362 -5.4123 24 1 10.0940 9.7633 -3.3516 25 6 6.1137 6.5535 -1.3424 26 6 5.6185 5.1121 -1.5887 27 1 6.1350 4.2967 -1.0823 28 6 0.1788 2.2695 -1.4145 29 6 -0.5089 1.7440 -2.4924 30 6 -1.8812 1.8884 -2.5737 31 6 -2.5660 2.5580 -1.5768 32 6 -1.8784 3.0826 -0.4984 33 6 -0.5060 2.9387 -0.4174 34 1 -0.3633 -1.0069 0.2053 35 1 -0.3633 0.6814 0.7694 36 1 -0.3633 0.3257 -0.9747 37 1 1.8934 -0.5139 -0.8899 38 1 1.8933 -0.5138 0.8900 39 1 3.9131 2.4729 0.2663 40 1 3.8260 0.8864 1.0686 41 1 4.0252 0.9808 -0.6977 42 1 4.0927 2.7944 -2.1033 43 1 6.0306 6.3904 -4.6494 44 1 4.6804 7.0625 -3.6839 45 1 6.8173 9.0242 -5.7665 46 1 5.2931 7.1840 -0.9999 47 1 6.9260 6.5574 -0.6156 48 1 0.0262 1.2213 -3.2713 49 1 -2.4184 1.4782 -3.4160 50 1 -3.6376 2.6751 -1.6428 51 1 -2.4134 3.6060 0.2802 52 1 0.0312 3.3486 0.4251 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690524139.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:17 Heat of formation + Delta-G solvation = 43.175556 kcal Electronic energy + Delta-G solvation = -30205.998418 eV Core-core repulsion = 26364.905833 eV Total energy + Delta-G solvation = -3841.092585 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -40.90349 -39.22247 -38.09892 -36.58038 -34.36475 -32.64876 -31.86992 -31.07951 -30.78278 -29.99290 -27.31850 -27.12864 -25.56660 -23.83295 -22.84745 -22.44931 -21.51407 -20.75804 -20.48389 -19.62626 -19.19092 -17.26244 -17.11001 -16.80492 -16.21735 -15.58648 -15.27567 -14.92912 -14.68037 -14.64547 -14.23095 -13.77380 -13.75059 -13.50682 -13.30136 -13.23911 -13.12003 -12.86084 -12.72342 -12.56686 -12.17473 -12.10949 -11.67788 -11.53172 -11.46740 -11.30742 -11.17665 -11.00755 -10.99309 -10.94368 -10.83376 -10.76639 -10.45078 -10.19160 -10.13999 -9.76977 -9.67975 -9.19662 -8.92686 -8.71856 -8.63311 -8.31388 -6.81277 -5.80657 -3.16086 1.20433 1.33256 2.63623 3.12274 3.38255 3.43568 3.45561 3.72430 4.28258 4.30246 4.44073 4.46905 4.50514 4.79434 4.84523 4.89566 4.99849 5.04175 5.09739 5.11606 5.16308 5.26007 5.35758 5.37318 5.39060 5.42862 5.46557 5.52907 5.55872 5.64922 5.79142 5.79997 5.81041 5.85924 5.90164 5.95089 5.97702 6.03358 6.15103 6.15375 6.23884 6.34923 6.43390 6.50511 6.53893 6.71245 6.80897 6.88898 6.91245 7.29493 7.49272 7.59442 7.69965 8.15858 8.29955 9.05812 9.72348 10.52151 11.35302 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020157 B = 0.002294 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.739464 B =12200.269745 C =12953.537659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.113 4.113 3 C -0.078 4.078 4 H 0.080 0.920 5 C -0.160 4.160 6 C -0.063 4.063 7 H 0.097 0.903 8 C 0.524 3.476 9 O -0.529 6.529 10 N -0.697 5.697 11 C 0.097 3.903 12 H 0.130 0.870 13 C -0.179 4.179 14 H 0.101 0.899 15 C 0.189 3.811 16 N -0.596 5.596 17 C -0.228 4.228 18 H 0.074 0.926 19 C -0.003 4.003 20 N -0.913 5.913 21 Si 0.912 3.088 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.158 3.842 26 C -0.181 4.181 27 H 0.102 0.898 28 C -0.056 4.056 29 C -0.117 4.117 30 C -0.124 4.124 31 C -0.122 4.122 32 C -0.122 4.122 33 C -0.082 4.082 34 H 0.045 0.955 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.398 0.602 43 H 0.081 0.919 44 H 0.034 0.966 45 H 0.255 0.745 46 H 0.026 0.974 47 H 0.051 0.949 48 H 0.120 0.880 49 H 0.120 0.880 50 H 0.118 0.882 51 H 0.119 0.881 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.225 -20.422 8.286 26.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.150 4.150 3 C -0.097 4.097 4 H 0.099 0.901 5 C -0.217 4.217 6 C -0.085 4.085 7 H 0.115 0.885 8 C 0.310 3.690 9 O -0.404 6.404 10 N -0.346 5.346 11 C -0.009 4.009 12 H 0.148 0.852 13 C -0.200 4.200 14 H 0.119 0.881 15 C 0.065 3.935 16 N -0.321 5.321 17 C -0.356 4.356 18 H 0.092 0.908 19 C -0.201 4.201 20 N -0.559 5.559 21 Si 0.742 3.258 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.031 3.969 26 C -0.203 4.203 27 H 0.120 0.880 28 C -0.057 4.057 29 C -0.135 4.135 30 C -0.143 4.143 31 C -0.140 4.140 32 C -0.140 4.140 33 C -0.100 4.100 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.232 0.768 43 H 0.100 0.900 44 H 0.052 0.948 45 H 0.065 0.935 46 H 0.043 0.957 47 H 0.069 0.931 48 H 0.138 0.862 49 H 0.138 0.862 50 H 0.136 0.864 51 H 0.138 0.862 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.543 -19.506 8.362 26.306 hybrid contribution 1.141 -0.018 -0.521 1.255 sum -14.402 -19.524 7.841 25.497 Atomic orbital electron populations 1.22341 0.95632 1.01143 1.03693 1.21537 0.96376 0.95090 1.02037 1.21179 0.96557 0.96483 0.95435 0.90124 1.22049 0.94603 1.02884 1.02208 1.20422 0.92780 0.94738 1.00535 0.88494 1.20299 0.81201 0.90674 0.76850 1.90714 1.63300 1.39418 1.46995 1.45507 1.14921 1.08421 1.65747 1.21866 0.90060 0.85667 1.03334 0.85215 1.24566 1.00713 1.02455 0.92293 0.88134 1.21593 0.91921 0.85375 0.94652 1.46007 1.26842 1.60120 0.99162 1.18969 0.93019 1.20117 1.03528 0.90786 1.24993 0.97597 0.98714 0.98774 1.69894 1.28306 1.45261 1.12431 0.86135 0.82559 0.78959 0.78181 1.21517 1.21625 1.20502 1.21067 0.96329 0.89580 0.89922 1.24366 0.96633 1.00598 0.98682 0.87999 1.19205 0.93116 0.98152 0.95189 1.20952 0.94565 1.00556 0.97437 1.21033 0.94190 1.00057 0.98973 1.21116 0.99749 0.98537 0.94596 1.21127 0.94397 0.99981 0.98498 1.20967 0.93835 0.96532 0.98637 0.93560 0.92627 0.90551 0.91880 0.91797 0.91653 0.91908 0.92362 0.76806 0.90017 0.94770 0.93539 0.95668 0.93077 0.86210 0.86241 0.86406 0.86250 0.85878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 8.39 37.16 0.31 -1.02 16 2 C -0.11 -0.80 5.39 -26.73 -0.14 -0.95 16 3 C -0.08 -0.65 2.06 -90.62 -0.19 -0.84 16 4 H 0.08 0.77 6.83 -51.93 -0.35 0.41 16 5 C -0.16 -1.28 8.03 37.16 0.30 -0.98 16 6 C -0.06 -0.62 1.97 -92.92 -0.18 -0.81 16 7 H 0.10 0.78 7.86 -51.93 -0.41 0.37 16 8 C 0.52 7.06 5.90 -10.99 -0.06 7.00 16 9 O -0.53 -9.25 14.53 5.56 0.08 -9.17 16 10 N -0.70 -9.02 4.57 -53.80 -0.25 -9.26 16 11 C 0.10 1.61 5.95 -67.92 -0.40 1.20 16 12 H 0.13 2.50 7.43 -51.93 -0.39 2.12 16 13 C -0.18 -3.31 6.96 -89.22 -0.62 -3.94 16 14 H 0.10 1.69 8.14 -51.93 -0.42 1.26 16 15 C 0.19 4.52 5.81 -0.29 0.00 4.52 16 16 N -0.60 -15.33 3.43 -165.70 -0.57 -15.90 16 17 C -0.23 -6.37 10.34 -15.06 -0.16 -6.52 16 18 H 0.07 2.00 7.84 -52.49 -0.41 1.59 16 19 C 0.00 -0.09 5.42 -17.43 -0.09 -0.18 16 20 N -0.91 -26.85 11.12 55.49 0.62 -26.23 16 21 Si 0.91 21.94 29.56 -169.99 -5.02 16.92 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C 0.16 3.36 7.05 -2.41 -0.02 3.34 16 26 C -0.18 -3.19 7.06 -89.21 -0.63 -3.82 16 27 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 28 C -0.06 -0.59 2.33 -104.62 -0.24 -0.84 16 29 C -0.12 -1.12 7.70 -39.59 -0.30 -1.43 16 30 C -0.12 -1.13 10.04 -39.59 -0.40 -1.53 16 31 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 32 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 33 C -0.08 -0.92 6.34 -39.59 -0.25 -1.17 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.05 0.47 7.04 -51.93 -0.37 0.10 16 36 H 0.08 0.64 3.98 -51.93 -0.21 0.43 16 37 H 0.06 0.41 8.12 -51.93 -0.42 -0.01 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.65 6.73 -51.92 -0.35 0.30 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.39 7.89 -51.93 -0.41 -0.02 16 42 H 0.40 4.06 8.06 -40.82 -0.33 3.73 16 43 H 0.08 2.15 6.97 -51.93 -0.36 1.79 16 44 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 46 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.12 0.94 7.95 -52.49 -0.42 0.52 16 49 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 50 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 51 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 52 H 0.12 1.46 6.86 -52.49 -0.36 1.10 16 LS Contribution 402.54 15.07 6.07 6.07 Total: -1.00 -32.14 402.54 -11.53 -43.66 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -8.57 Total: 5.02 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -3.89 Total: -11.10 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -0.20 Total: -51.40 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.08 Total: -9.17 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.14 -11.53 -43.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690524139.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.839 kcal (2) G-P(sol) polarization free energy of solvation -32.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds