Wall clock time and date at job start Wed Apr 1 2020 02:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47190 * 2 1 4 4 H 1.09005 * 109.47325 * 53.16829 * 3 2 1 5 5 C 1.53005 * 109.47110 * 173.16658 * 3 2 1 6 6 C 1.52998 * 109.47534 * 293.16696 * 3 2 1 7 7 H 1.09002 * 109.46911 * 307.25042 * 6 3 2 8 8 C 1.50696 * 109.47651 * 187.24421 * 6 3 2 9 9 O 1.21280 * 119.99846 * 266.99290 * 8 6 3 10 10 N 1.34773 * 119.99963 * 86.99000 * 8 6 3 11 11 C 1.46505 * 119.99652 * 174.79803 * 10 8 6 12 12 H 1.08993 * 115.51974 * 350.41574 * 11 10 8 13 13 C 1.53003 * 117.43883 * 204.99942 * 11 10 8 14 14 H 1.08995 * 119.54371 * 4.11672 * 13 11 10 15 15 C 1.54386 * 118.12104 * 159.21477 * 13 11 10 16 16 N 1.51832 * 102.86898 * 88.01923 * 15 13 11 17 17 C 1.36939 * 127.61221 * 140.54269 * 16 15 13 18 18 H 1.07994 * 119.99809 * 200.93784 * 17 16 15 19 19 C 1.38809 * 119.99726 * 20.93791 * 17 16 15 20 20 N 1.31614 * 120.00440 * 7.16004 * 19 17 16 21 21 Si 1.86798 * 119.99815 * 187.16220 * 19 17 16 22 22 H 1.48497 * 109.47485 * 89.99813 * 21 19 17 23 23 H 1.48504 * 109.47144 * 210.00123 * 21 19 17 24 24 H 1.48507 * 109.47204 * 329.99843 * 21 19 17 25 25 C 1.48147 * 104.54682 * 320.27339 * 16 15 13 26 26 C 1.53007 * 117.43754 * 135.76290 * 11 10 8 27 27 H 1.08994 * 119.54313 * 355.87840 * 26 11 10 28 28 C 1.50708 * 109.46739 * 67.24204 * 6 3 2 29 29 C 1.38238 * 119.99796 * 235.59344 * 28 6 3 30 30 C 1.38227 * 119.99851 * 180.02562 * 29 28 6 31 31 C 1.38239 * 119.99984 * 359.97438 * 30 29 28 32 32 C 1.38231 * 120.00006 * 359.97438 * 31 30 29 33 33 C 1.38229 * 119.99897 * 55.57337 * 28 6 3 34 34 H 1.08993 * 109.47226 * 191.52494 * 1 2 3 35 35 H 1.09006 * 109.47002 * 311.52813 * 1 2 3 36 36 H 1.09000 * 109.46986 * 71.52478 * 1 2 3 37 37 H 1.08998 * 109.47306 * 239.99717 * 2 1 3 38 38 H 1.09000 * 109.46867 * 119.99871 * 2 1 3 39 39 H 1.09007 * 109.47231 * 185.31372 * 5 3 2 40 40 H 1.08997 * 109.47019 * 305.31234 * 5 3 2 41 41 H 1.08997 * 109.46724 * 65.31547 * 5 3 2 42 42 H 0.96998 * 120.00300 * 354.80047 * 10 8 6 43 43 H 1.09000 * 110.40850 * 205.97215 * 15 13 11 44 44 H 1.09004 * 110.40616 * 328.40688 * 15 13 11 45 45 H 0.97000 * 120.00680 * 180.02562 * 20 19 17 46 46 H 1.08997 * 110.40326 * 281.07202 * 25 16 15 47 47 H 1.09002 * 110.40198 * 158.64494 * 25 16 15 48 48 H 1.07992 * 120.00144 * 359.97438 * 29 28 6 49 49 H 1.08002 * 120.00183 * 179.97438 * 30 29 28 50 50 H 1.08002 * 120.00106 * 179.69780 * 31 30 29 51 51 H 1.08000 * 120.00039 * 179.97438 * 32 31 30 52 52 H 1.08002 * 119.99974 * 359.97438 * 33 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5803 1.9904 0.8226 5 6 3.5604 1.4458 0.1716 6 6 1.6751 2.1125 -1.3261 7 1 2.0250 1.4952 -2.1535 8 6 2.3277 3.4688 -1.4001 9 8 1.7240 4.4533 -1.0297 10 7 3.5823 3.5878 -1.8778 11 6 4.1751 4.9155 -2.0567 12 1 3.4905 5.7553 -1.9382 13 6 5.2900 5.0558 -3.0951 14 1 5.5619 4.1985 -3.7109 15 6 5.5903 6.4629 -3.6549 16 7 6.6009 7.0125 -2.6640 17 6 7.7103 7.7684 -2.9342 18 1 8.5186 7.8156 -2.2195 19 6 7.7959 8.4739 -4.1265 20 7 6.7575 8.5316 -4.9331 21 14 9.3850 9.3414 -4.5864 22 1 10.2488 8.4145 -5.3609 23 1 9.0756 10.5362 -5.4123 24 1 10.0940 9.7633 -3.3516 25 6 6.1137 6.5535 -1.3424 26 6 5.6185 5.1121 -1.5887 27 1 6.1350 4.2967 -1.0823 28 6 0.1788 2.2695 -1.4145 29 6 -0.5089 1.7440 -2.4924 30 6 -1.8812 1.8884 -2.5737 31 6 -2.5660 2.5580 -1.5768 32 6 -1.8784 3.0826 -0.4984 33 6 -0.5060 2.9387 -0.4174 34 1 -0.3633 -1.0069 0.2053 35 1 -0.3633 0.6814 0.7694 36 1 -0.3633 0.3257 -0.9747 37 1 1.8934 -0.5139 -0.8899 38 1 1.8933 -0.5138 0.8900 39 1 3.9131 2.4729 0.2663 40 1 3.8260 0.8864 1.0686 41 1 4.0252 0.9808 -0.6977 42 1 4.0927 2.7944 -2.1033 43 1 6.0306 6.3904 -4.6494 44 1 4.6804 7.0625 -3.6839 45 1 6.8173 9.0242 -5.7665 46 1 5.2931 7.1840 -0.9999 47 1 6.9260 6.5574 -0.6156 48 1 0.0262 1.2213 -3.2713 49 1 -2.4184 1.4782 -3.4160 50 1 -3.6376 2.6751 -1.6428 51 1 -2.4134 3.6060 0.2802 52 1 0.0312 3.3486 0.4251 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690524139.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:15 Heat of formation + Delta-G solvation = 26.156691 kcal Electronic energy + Delta-G solvation = -30206.736411 eV Core-core repulsion = 26364.905833 eV Total energy + Delta-G solvation = -3841.830578 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -41.82999 -40.45581 -39.34456 -37.34860 -35.96744 -34.31386 -32.63619 -32.13599 -31.76422 -31.15442 -28.93960 -28.19821 -27.36384 -24.60168 -23.74591 -23.54741 -22.60223 -21.98111 -21.73722 -20.81956 -20.53796 -18.84617 -18.20503 -17.96128 -17.42342 -16.72868 -16.40207 -16.09579 -15.91733 -15.53228 -15.45855 -14.94270 -14.86485 -14.63657 -14.46239 -14.27589 -14.11033 -13.94341 -13.68582 -13.56653 -13.37597 -13.26360 -13.19035 -12.88133 -12.74805 -12.71121 -12.28972 -12.18318 -12.03271 -11.96927 -11.89965 -11.83131 -11.69122 -11.63543 -11.60312 -11.43796 -10.90291 -10.77973 -10.66244 -9.68575 -9.66253 -9.37604 -8.88037 -7.93901 -5.31956 0.45783 0.59063 1.46228 1.47993 1.55345 1.57184 2.00277 2.47910 2.85247 2.96195 3.28774 3.51079 3.56430 3.64921 3.81559 3.85552 3.92879 4.05660 4.12796 4.14064 4.21835 4.32214 4.34273 4.37866 4.42080 4.50953 4.53219 4.63321 4.69656 4.79362 4.82878 4.86544 4.87131 4.90263 4.98285 5.05751 5.15541 5.20401 5.23133 5.25018 5.26650 5.36735 5.38465 5.43970 5.46225 5.54501 5.56253 5.60241 5.64239 5.70150 5.75911 6.12544 6.17133 6.55121 6.93909 7.24887 7.63186 8.45991 9.21765 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020157 B = 0.002294 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.739464 B =12200.269745 C =12953.537659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.107 4.107 3 C -0.073 4.073 4 H 0.061 0.939 5 C -0.159 4.159 6 C -0.054 4.054 7 H 0.125 0.875 8 C 0.523 3.477 9 O -0.574 6.574 10 N -0.681 5.681 11 C 0.118 3.882 12 H 0.100 0.900 13 C -0.175 4.175 14 H 0.129 0.871 15 C 0.192 3.808 16 N -0.620 5.620 17 C -0.242 4.242 18 H 0.080 0.920 19 C -0.061 4.061 20 N -0.947 5.947 21 Si 0.981 3.019 22 H -0.282 1.282 23 H -0.295 1.295 24 H -0.267 1.267 25 C 0.150 3.850 26 C -0.164 4.164 27 H 0.136 0.864 28 C -0.068 4.068 29 C -0.122 4.122 30 C -0.129 4.129 31 C -0.127 4.127 32 C -0.137 4.137 33 C -0.099 4.099 34 H 0.052 0.948 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.044 0.956 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.416 0.584 43 H 0.052 0.948 44 H 0.004 0.996 45 H 0.250 0.750 46 H 0.012 0.988 47 H 0.062 0.938 48 H 0.141 0.859 49 H 0.143 0.857 50 H 0.138 0.862 51 H 0.127 0.873 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.771 -23.487 8.270 28.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.144 4.144 3 C -0.092 4.092 4 H 0.080 0.920 5 C -0.216 4.216 6 C -0.075 4.075 7 H 0.143 0.857 8 C 0.311 3.689 9 O -0.452 6.452 10 N -0.332 5.332 11 C 0.010 3.990 12 H 0.117 0.883 13 C -0.196 4.196 14 H 0.146 0.854 15 C 0.067 3.933 16 N -0.346 5.346 17 C -0.371 4.371 18 H 0.097 0.903 19 C -0.255 4.255 20 N -0.594 5.594 21 Si 0.808 3.192 22 H -0.209 1.209 23 H -0.222 1.222 24 H -0.192 1.192 25 C 0.024 3.976 26 C -0.185 4.185 27 H 0.154 0.846 28 C -0.068 4.068 29 C -0.140 4.140 30 C -0.147 4.147 31 C -0.145 4.145 32 C -0.155 4.155 33 C -0.117 4.117 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.254 0.746 43 H 0.070 0.930 44 H 0.022 0.978 45 H 0.059 0.941 46 H 0.030 0.970 47 H 0.080 0.920 48 H 0.159 0.841 49 H 0.160 0.840 50 H 0.156 0.844 51 H 0.145 0.855 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.083 -22.626 8.375 28.453 hybrid contribution 0.883 0.981 -0.445 1.393 sum -14.200 -21.645 7.930 27.075 Atomic orbital electron populations 1.22311 0.96312 1.01091 1.03002 1.21501 0.95676 0.93996 1.03218 1.21137 0.97013 0.97071 0.93932 0.92015 1.22048 0.93981 1.01934 1.03683 1.20460 0.92127 0.92518 1.02366 0.85675 1.21026 0.80755 0.91680 0.75432 1.90707 1.64318 1.41376 1.48790 1.45305 1.15000 1.07404 1.65456 1.21348 0.89123 0.86928 1.01555 0.88251 1.24255 1.02535 0.99967 0.92876 0.85373 1.21325 0.90170 0.88232 0.93561 1.46333 1.26666 1.60394 1.01191 1.19368 0.93917 1.20146 1.03664 0.90277 1.25852 1.00883 0.99854 0.98882 1.70089 1.30384 1.46291 1.12660 0.85055 0.78685 0.77430 0.77988 1.20882 1.22163 1.19208 1.21191 0.96304 0.91606 0.88452 1.24257 0.97374 0.99070 0.97789 0.84582 1.19323 0.93493 0.98558 0.95449 1.21240 0.95031 1.00334 0.97374 1.21380 0.94313 0.99512 0.99446 1.21407 1.00872 0.98021 0.94178 1.21330 0.94258 1.00470 0.99396 1.20955 0.94442 0.97536 0.98782 0.92906 0.93997 0.90933 0.90264 0.90968 0.93689 0.90959 0.90346 0.74554 0.92985 0.97822 0.94079 0.97023 0.91967 0.84109 0.83952 0.84439 0.85508 0.87697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 8.39 71.98 0.60 -1.75 16 2 C -0.11 -1.22 5.39 30.59 0.16 -1.05 16 3 C -0.07 -1.09 2.06 -10.79 -0.02 -1.11 16 4 H 0.06 1.17 6.83 -2.38 -0.02 1.15 16 5 C -0.16 -2.10 8.03 71.98 0.58 -1.52 16 6 C -0.05 -0.95 1.97 -12.29 -0.02 -0.97 16 7 H 0.13 1.51 7.86 -2.39 -0.02 1.49 16 8 C 0.52 13.59 5.90 87.66 0.52 14.11 16 9 O -0.57 -20.50 14.53 -3.03 -0.04 -20.54 16 10 N -0.68 -16.24 4.57 -442.52 -2.02 -18.27 16 11 C 0.12 3.84 5.95 44.99 0.27 4.11 16 12 H 0.10 3.97 7.43 -2.39 -0.02 3.95 16 13 C -0.18 -6.34 6.96 -9.88 -0.07 -6.41 16 14 H 0.13 3.96 8.14 -2.39 -0.02 3.94 16 15 C 0.19 9.49 5.81 85.79 0.50 9.99 16 16 N -0.62 -32.54 3.43 -678.16 -2.33 -34.87 16 17 C -0.24 -13.70 10.34 84.03 0.87 -12.84 16 18 H 0.08 4.28 7.84 -2.91 -0.02 4.26 16 19 C -0.06 -3.47 5.42 84.86 0.46 -3.01 16 20 N -0.95 -57.59 11.12 21.65 0.24 -57.34 16 21 Si 0.98 45.64 29.56 68.60 2.03 47.67 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 23 H -0.30 -13.85 7.11 99.48 0.71 -13.15 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 25 C 0.15 6.42 7.05 86.53 0.61 7.03 16 26 C -0.16 -5.51 7.06 -9.88 -0.07 -5.58 16 27 H 0.14 3.73 8.14 -2.39 -0.02 3.71 16 28 C -0.07 -1.36 2.33 -19.86 -0.05 -1.40 16 29 C -0.12 -2.07 7.70 22.27 0.17 -1.89 16 30 C -0.13 -2.06 10.04 22.27 0.22 -1.83 16 31 C -0.13 -2.18 10.05 22.27 0.22 -1.95 16 32 C -0.14 -2.76 10.05 22.27 0.22 -2.54 16 33 C -0.10 -2.27 6.34 22.27 0.14 -2.12 16 34 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.04 0.69 7.04 -2.38 -0.02 0.67 16 36 H 0.07 1.06 3.98 -2.39 -0.01 1.05 16 37 H 0.08 0.69 8.12 -2.39 -0.02 0.67 16 38 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.04 0.79 6.73 -2.38 -0.02 0.77 16 40 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.08 0.72 7.89 -2.39 -0.02 0.70 16 42 H 0.42 6.95 8.06 -92.71 -0.75 6.21 16 43 H 0.05 2.85 6.97 -2.39 -0.02 2.83 16 44 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 45 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 46 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 48 H 0.14 1.72 7.95 -2.91 -0.02 1.70 16 49 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 50 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 51 H 0.13 2.21 8.06 -2.91 -0.02 2.18 16 52 H 0.10 2.69 6.86 -2.91 -0.02 2.67 16 Total: -1.00 -73.28 402.54 3.36 -69.92 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.16 Total: 24.19 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 5.32 Total: -10.76 kcal Atomic # 7 Polarization: -106.37 SS G_CDS: -4.11 Total: -110.48 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.04 Total: -20.54 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -73.28 3.36 -69.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690524139.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.079 kcal (2) G-P(sol) polarization free energy of solvation -73.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds