Wall clock time and date at job start Wed Apr 1 2020 02:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46779 * 2 1 4 4 N 1.46503 * 109.46861 * 179.97438 * 3 2 1 5 5 C 1.36937 * 120.00380 * 269.99782 * 4 3 2 6 6 H 1.08004 * 120.00019 * 326.22448 * 5 4 3 7 7 C 1.38809 * 120.00129 * 146.21810 * 5 4 3 8 8 N 1.31623 * 119.99941 * 337.68154 * 7 5 4 9 9 Si 1.86805 * 120.00010 * 157.68678 * 7 5 4 10 10 H 1.48499 * 109.46934 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47026 * 119.99986 * 9 7 5 12 12 H 1.48495 * 109.46649 * 239.99671 * 9 7 5 13 13 C 1.46501 * 119.99885 * 90.00053 * 4 3 2 14 14 C 1.53000 * 109.46879 * 85.79173 * 13 4 3 15 15 N 1.46501 * 109.46879 * 180.02562 * 14 13 4 16 16 C 1.34778 * 119.99831 * 180.02562 * 15 14 13 17 17 O 1.21273 * 120.00310 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99863 * 179.97438 * 16 15 14 19 19 C 1.54416 * 129.01423 * 179.97438 * 18 16 15 20 20 C 1.54415 * 78.89609 * 180.64861 * 19 18 16 21 21 C 1.50691 * 129.01628 * 180.64278 * 20 19 18 22 22 C 1.38229 * 120.00282 * 180.02562 * 21 20 19 23 23 C 1.38237 * 120.00114 * 179.97438 * 22 21 20 24 24 C 1.38235 * 120.00048 * 359.97438 * 23 22 21 25 25 C 1.38237 * 120.00030 * 0.02562 * 24 23 22 26 26 C 1.38237 * 119.99922 * 359.97438 * 25 24 23 27 27 C 1.54897 * 84.49134 * 43.15436 * 20 19 18 28 28 C 1.54889 * 84.49214 * 318.13620 * 20 19 18 29 29 H 1.09000 * 109.46892 * 60.00288 * 1 2 3 30 30 H 1.08994 * 109.46619 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47156 * 300.00400 * 1 2 3 32 32 H 1.08995 * 109.47560 * 240.00212 * 2 1 3 33 33 H 1.09000 * 109.46892 * 119.99712 * 2 1 3 34 34 H 1.09005 * 109.47082 * 60.00365 * 3 2 1 35 35 H 1.08993 * 109.47293 * 299.99933 * 3 2 1 36 36 H 0.96999 * 119.99897 * 180.02562 * 8 7 5 37 37 H 1.08999 * 109.47129 * 325.79549 * 13 4 3 38 38 H 1.09002 * 109.46851 * 205.78992 * 13 4 3 39 39 H 1.09001 * 109.47389 * 60.00006 * 14 13 4 40 40 H 1.08995 * 109.47570 * 299.99761 * 14 13 4 41 41 H 0.97001 * 120.00289 * 359.97438 * 15 14 13 42 42 H 1.09000 * 114.93029 * 68.15774 * 19 18 16 43 43 H 1.09004 * 114.98862 * 293.13941 * 19 18 16 44 44 H 1.08004 * 119.99940 * 0.25635 * 22 21 20 45 45 H 1.07998 * 119.99764 * 179.97438 * 23 22 21 46 46 H 1.08001 * 120.00060 * 179.97438 * 24 23 22 47 47 H 1.07991 * 120.00059 * 179.97438 * 25 24 23 48 48 H 1.07990 * 120.00040 * 179.97438 * 26 25 24 49 49 H 1.09004 * 114.97551 * 69.39154 * 27 20 19 50 50 H 1.08993 * 114.97645 * 204.56398 * 27 20 19 51 51 H 1.09004 * 114.97843 * 155.42881 * 28 20 19 52 52 H 1.08993 * 114.98057 * 290.60727 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1893 1.4428 1.1868 6 1 3.7856 1.9630 2.0429 7 6 5.4016 0.7744 1.2888 8 7 5.6911 -0.1956 0.4476 9 14 6.6220 1.2516 2.6202 10 1 6.0618 2.3633 3.4298 11 1 6.8805 0.0813 3.4971 12 1 7.8940 1.6896 1.9915 13 6 4.2380 1.4424 -1.2678 14 6 4.4015 2.8810 -1.7625 15 7 5.1340 2.8808 -3.0313 16 6 5.3973 4.0448 -3.6575 17 8 5.0283 5.0924 -3.1706 18 6 6.1513 4.0446 -4.9623 19 6 6.5613 5.2411 -5.8483 20 6 7.1172 4.0580 -6.6703 21 6 7.8697 4.0805 -7.9757 22 6 8.2847 2.8959 -8.5548 23 6 8.9745 2.9165 -9.7526 24 6 9.2488 4.1217 -10.3716 25 6 8.8337 5.3064 -9.7925 26 6 8.1439 5.2858 -8.5948 27 6 5.7642 3.3829 -6.3344 28 6 7.5653 3.5063 -5.2941 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8901 35 1 1.6767 1.9564 -0.8899 36 1 6.5381 -0.6629 0.5192 37 1 3.6839 0.8646 -2.0076 38 1 5.2210 0.9953 -1.1193 39 1 4.9555 3.4589 -1.0228 40 1 3.4186 3.3281 -1.9110 41 1 5.4301 2.0430 -3.4202 42 1 7.3179 5.8954 -5.4152 43 1 5.7326 5.7748 -6.3136 44 1 8.0660 1.9540 -8.0737 45 1 9.2991 1.9910 -10.2047 46 1 9.7880 4.1378 -11.3072 47 1 9.0484 6.2479 -10.2759 48 1 7.8201 6.2112 -8.1422 49 1 4.8957 3.8242 -6.8235 50 1 5.7758 2.2932 -6.3555 51 1 7.6892 2.4242 -5.2502 52 1 8.3715 4.0622 -4.8157 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691198380.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:44 Heat of formation + Delta-G solvation = 94.945641 kcal Electronic energy + Delta-G solvation = -28960.768065 eV Core-core repulsion = 25121.920399 eV Total energy + Delta-G solvation = -3838.847666 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.27231 -39.18533 -38.54264 -36.42761 -34.24860 -32.82665 -31.58694 -31.19002 -30.82417 -28.43443 -25.96348 -25.92649 -25.59262 -25.45454 -23.50007 -22.62765 -22.30300 -21.31791 -20.03181 -19.71882 -18.46319 -17.54456 -16.72969 -16.28543 -15.59470 -15.18359 -15.14581 -15.01277 -14.74339 -14.42127 -14.32229 -14.24108 -13.98147 -13.74062 -13.67498 -13.26714 -13.01753 -12.80199 -12.59392 -12.49540 -11.94428 -11.71199 -11.59640 -11.37007 -11.33792 -11.28468 -11.24135 -11.03242 -10.88321 -10.77876 -10.51147 -10.45799 -10.36648 -10.25691 -9.98561 -9.93747 -9.69067 -9.50383 -9.20443 -8.94233 -8.61031 -8.48596 -6.69846 -5.86068 -3.38458 1.01689 1.12065 2.71503 3.32598 3.41894 3.42328 3.43689 3.46819 3.99499 4.11174 4.22660 4.38861 4.44230 4.48340 4.51427 4.72594 4.74419 4.84835 5.08518 5.24545 5.26914 5.28687 5.42452 5.43042 5.47376 5.56948 5.68665 5.72798 5.74145 5.74781 5.77140 5.78349 5.82132 6.00712 6.08138 6.13621 6.19729 6.22776 6.26332 6.28078 6.35387 6.49700 6.51445 6.62649 6.68781 6.70019 6.85571 7.01435 7.04779 7.24135 7.57114 7.77735 7.92235 8.43509 8.56689 9.11765 9.75316 10.30697 11.15462 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013552 B = 0.002153 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.552969 B =13002.356953 C =13772.541435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.147 3.853 4 N -0.580 5.580 5 C -0.255 4.255 6 H 0.065 0.935 7 C 0.008 3.992 8 N -0.888 5.888 9 Si 0.896 3.104 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.288 1.288 13 C 0.135 3.865 14 C 0.098 3.902 15 N -0.711 5.711 16 C 0.568 3.432 17 O -0.541 6.541 18 C -0.158 4.158 19 C -0.085 4.085 20 C -0.091 4.091 21 C -0.022 4.022 22 C -0.107 4.107 23 C -0.119 4.119 24 C -0.123 4.123 25 C -0.120 4.120 26 C -0.108 4.108 27 C -0.092 4.092 28 C -0.091 4.091 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.043 0.957 35 H 0.033 0.967 36 H 0.254 0.746 37 H 0.027 0.973 38 H 0.106 0.894 39 H 0.065 0.935 40 H 0.050 0.950 41 H 0.398 0.602 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.123 0.877 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.122 0.878 48 H 0.123 0.877 49 H 0.079 0.921 50 H 0.083 0.917 51 H 0.084 0.916 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.076 5.253 -20.655 21.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C 0.021 3.979 4 N -0.300 5.300 5 C -0.385 4.385 6 H 0.082 0.918 7 C -0.192 4.192 8 N -0.531 5.531 9 Si 0.726 3.274 10 H -0.200 1.200 11 H -0.217 1.217 12 H -0.214 1.214 13 C 0.008 3.992 14 C -0.027 4.027 15 N -0.361 5.361 16 C 0.352 3.648 17 O -0.418 6.418 18 C -0.161 4.161 19 C -0.123 4.123 20 C -0.091 4.091 21 C -0.022 4.022 22 C -0.125 4.125 23 C -0.137 4.137 24 C -0.141 4.141 25 C -0.138 4.138 26 C -0.126 4.126 27 C -0.129 4.129 28 C -0.128 4.128 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.045 0.955 38 H 0.124 0.876 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.232 0.768 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.141 0.859 45 H 0.141 0.859 46 H 0.139 0.861 47 H 0.140 0.860 48 H 0.141 0.859 49 H 0.098 0.902 50 H 0.101 0.899 51 H 0.102 0.898 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.913 5.895 -20.234 21.435 hybrid contribution 0.840 -0.283 0.487 1.011 sum 4.752 5.612 -19.747 21.072 Atomic orbital electron populations 1.21759 0.97761 1.00316 1.00725 1.22072 0.93059 1.00782 1.02047 1.20974 0.85046 0.93529 0.98389 1.43712 0.99488 1.84866 1.01947 1.19152 1.02678 1.26267 0.90373 0.91771 1.25081 1.00630 0.95257 0.98184 1.69980 1.23400 1.20568 1.39191 0.86329 0.81468 0.78137 0.81516 1.20049 1.21678 1.21437 1.21078 1.01258 0.90320 0.86564 1.22401 0.94746 1.02941 0.82655 1.46004 1.57308 1.08116 1.24637 1.18523 0.78962 0.84089 0.83178 1.90691 1.52909 1.31726 1.66504 1.24250 0.98132 1.00245 0.93468 1.23748 0.99830 0.94664 0.94032 1.22403 0.96160 0.98803 0.91780 1.18345 0.97563 0.93401 0.92849 1.20971 0.98084 0.97791 0.95631 1.21142 0.98932 0.98125 0.95550 1.21176 1.00252 0.92674 1.00043 1.21138 0.98607 0.98298 0.95771 1.21015 0.98582 0.97557 0.95420 1.24561 0.96005 0.99997 0.92371 1.24103 0.94645 1.01022 0.93066 0.93677 0.93881 0.93376 0.93111 0.91871 0.93813 0.94812 0.93622 0.95503 0.87616 0.91656 0.93197 0.76816 0.90335 0.90297 0.85853 0.85922 0.86140 0.85977 0.85889 0.90229 0.89896 0.89789 0.90291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.91 37.16 0.37 -1.88 16 2 C -0.14 -2.69 6.26 -26.73 -0.17 -2.85 16 3 C 0.15 3.02 5.69 -4.04 -0.02 3.00 16 4 N -0.58 -13.85 2.45 -173.23 -0.43 -14.28 16 5 C -0.26 -6.75 9.49 -15.06 -0.14 -6.89 16 6 H 0.06 1.72 7.92 -52.48 -0.42 1.30 16 7 C 0.01 0.22 4.93 -17.43 -0.09 0.13 16 8 N -0.89 -24.32 11.32 55.49 0.63 -23.70 16 9 Si 0.90 21.26 29.61 -169.99 -5.03 16.23 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 13 C 0.14 2.97 5.37 -4.04 -0.02 2.95 16 14 C 0.10 1.97 6.00 -4.04 -0.02 1.94 16 15 N -0.71 -11.93 5.56 -60.30 -0.33 -12.27 16 16 C 0.57 9.70 7.94 -10.98 -0.09 9.61 16 17 O -0.54 -11.39 17.10 5.56 0.10 -11.29 16 18 C -0.16 -2.02 3.50 -170.98 -0.60 -2.62 16 19 C -0.09 -0.97 7.33 -26.71 -0.20 -1.16 16 20 C -0.09 -0.91 3.09 -172.25 -0.53 -1.44 16 21 C -0.02 -0.21 5.88 -104.63 -0.62 -0.82 16 22 C -0.11 -0.93 9.74 -39.59 -0.39 -1.32 16 23 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 24 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 25 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 26 C -0.11 -0.95 9.66 -39.58 -0.38 -1.33 16 27 C -0.09 -0.94 7.95 -24.71 -0.20 -1.14 16 28 C -0.09 -0.98 7.84 -25.98 -0.20 -1.19 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.04 0.89 8.04 -51.93 -0.42 0.48 16 35 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 36 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 37 H 0.03 0.56 8.10 -51.93 -0.42 0.14 16 38 H 0.11 2.61 5.32 -51.93 -0.28 2.33 16 39 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.40 5.72 8.47 -40.82 -0.35 5.38 16 42 H 0.08 0.89 7.94 -51.93 -0.41 0.47 16 43 H 0.08 0.87 7.91 -51.93 -0.41 0.46 16 44 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 45 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 46 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 47 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 48 H 0.12 0.97 7.75 -52.49 -0.41 0.56 16 49 H 0.08 0.80 7.91 -51.93 -0.41 0.39 16 50 H 0.08 0.75 7.97 -51.93 -0.41 0.34 16 51 H 0.08 0.82 7.97 -51.93 -0.41 0.40 16 52 H 0.08 0.87 7.93 -51.93 -0.41 0.46 16 LS Contribution 426.90 15.07 6.43 6.43 Total: -1.00 -30.40 426.90 -12.08 -42.48 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -8.96 Total: 5.37 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -4.49 Total: -8.98 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: -0.13 Total: -50.24 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.10 Total: -11.29 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 6.43 Total: 6.43 kcal Total: -30.40 -12.08 -42.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691198380.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.426 kcal (2) G-P(sol) polarization free energy of solvation -30.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds