Wall clock time and date at job start Wed Apr 1 2020 02:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46779 * 2 1 4 4 N 1.46503 * 109.46861 * 179.97438 * 3 2 1 5 5 C 1.36937 * 120.00380 * 269.99782 * 4 3 2 6 6 H 1.08004 * 120.00019 * 326.22448 * 5 4 3 7 7 C 1.38809 * 120.00129 * 146.21810 * 5 4 3 8 8 N 1.31623 * 119.99941 * 337.68154 * 7 5 4 9 9 Si 1.86805 * 120.00010 * 157.68678 * 7 5 4 10 10 H 1.48499 * 109.46934 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47026 * 119.99986 * 9 7 5 12 12 H 1.48495 * 109.46649 * 239.99671 * 9 7 5 13 13 C 1.46501 * 119.99885 * 90.00053 * 4 3 2 14 14 C 1.53000 * 109.46879 * 85.79173 * 13 4 3 15 15 N 1.46501 * 109.46879 * 180.02562 * 14 13 4 16 16 C 1.34778 * 119.99831 * 180.02562 * 15 14 13 17 17 O 1.21273 * 120.00310 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99863 * 179.97438 * 16 15 14 19 19 C 1.54416 * 129.01423 * 179.97438 * 18 16 15 20 20 C 1.54415 * 78.89609 * 180.64861 * 19 18 16 21 21 C 1.50691 * 129.01628 * 180.64278 * 20 19 18 22 22 C 1.38229 * 120.00282 * 180.02562 * 21 20 19 23 23 C 1.38237 * 120.00114 * 179.97438 * 22 21 20 24 24 C 1.38235 * 120.00048 * 359.97438 * 23 22 21 25 25 C 1.38237 * 120.00030 * 0.02562 * 24 23 22 26 26 C 1.38237 * 119.99922 * 359.97438 * 25 24 23 27 27 C 1.54897 * 84.49134 * 43.15436 * 20 19 18 28 28 C 1.54889 * 84.49214 * 318.13620 * 20 19 18 29 29 H 1.09000 * 109.46892 * 60.00288 * 1 2 3 30 30 H 1.08994 * 109.46619 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47156 * 300.00400 * 1 2 3 32 32 H 1.08995 * 109.47560 * 240.00212 * 2 1 3 33 33 H 1.09000 * 109.46892 * 119.99712 * 2 1 3 34 34 H 1.09005 * 109.47082 * 60.00365 * 3 2 1 35 35 H 1.08993 * 109.47293 * 299.99933 * 3 2 1 36 36 H 0.96999 * 119.99897 * 180.02562 * 8 7 5 37 37 H 1.08999 * 109.47129 * 325.79549 * 13 4 3 38 38 H 1.09002 * 109.46851 * 205.78992 * 13 4 3 39 39 H 1.09001 * 109.47389 * 60.00006 * 14 13 4 40 40 H 1.08995 * 109.47570 * 299.99761 * 14 13 4 41 41 H 0.97001 * 120.00289 * 359.97438 * 15 14 13 42 42 H 1.09000 * 114.93029 * 68.15774 * 19 18 16 43 43 H 1.09004 * 114.98862 * 293.13941 * 19 18 16 44 44 H 1.08004 * 119.99940 * 0.25635 * 22 21 20 45 45 H 1.07998 * 119.99764 * 179.97438 * 23 22 21 46 46 H 1.08001 * 120.00060 * 179.97438 * 24 23 22 47 47 H 1.07991 * 120.00059 * 179.97438 * 25 24 23 48 48 H 1.07990 * 120.00040 * 179.97438 * 26 25 24 49 49 H 1.09004 * 114.97551 * 69.39154 * 27 20 19 50 50 H 1.08993 * 114.97645 * 204.56398 * 27 20 19 51 51 H 1.09004 * 114.97843 * 155.42881 * 28 20 19 52 52 H 1.08993 * 114.98057 * 290.60727 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1893 1.4428 1.1868 6 1 3.7856 1.9630 2.0429 7 6 5.4016 0.7744 1.2888 8 7 5.6911 -0.1956 0.4476 9 14 6.6220 1.2516 2.6202 10 1 6.0618 2.3633 3.4298 11 1 6.8805 0.0813 3.4971 12 1 7.8940 1.6896 1.9915 13 6 4.2380 1.4424 -1.2678 14 6 4.4015 2.8810 -1.7625 15 7 5.1340 2.8808 -3.0313 16 6 5.3973 4.0448 -3.6575 17 8 5.0283 5.0924 -3.1706 18 6 6.1513 4.0446 -4.9623 19 6 6.5613 5.2411 -5.8483 20 6 7.1172 4.0580 -6.6703 21 6 7.8697 4.0805 -7.9757 22 6 8.2847 2.8959 -8.5548 23 6 8.9745 2.9165 -9.7526 24 6 9.2488 4.1217 -10.3716 25 6 8.8337 5.3064 -9.7925 26 6 8.1439 5.2858 -8.5948 27 6 5.7642 3.3829 -6.3344 28 6 7.5653 3.5063 -5.2941 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8901 35 1 1.6767 1.9564 -0.8899 36 1 6.5381 -0.6629 0.5192 37 1 3.6839 0.8646 -2.0076 38 1 5.2210 0.9953 -1.1193 39 1 4.9555 3.4589 -1.0228 40 1 3.4186 3.3281 -1.9110 41 1 5.4301 2.0430 -3.4202 42 1 7.3179 5.8954 -5.4152 43 1 5.7326 5.7748 -6.3136 44 1 8.0660 1.9540 -8.0737 45 1 9.2991 1.9910 -10.2047 46 1 9.7880 4.1378 -11.3072 47 1 9.0484 6.2479 -10.2759 48 1 7.8201 6.2112 -8.1422 49 1 4.8957 3.8242 -6.8235 50 1 5.7758 2.2932 -6.3555 51 1 7.6892 2.4242 -5.2502 52 1 8.3715 4.0622 -4.8157 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691198380.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:43 Heat of formation + Delta-G solvation = 80.905933 kcal Electronic energy + Delta-G solvation = -28961.376872 eV Core-core repulsion = 25121.920399 eV Total energy + Delta-G solvation = -3839.456473 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.17929 -40.25404 -39.52324 -38.19721 -35.80289 -34.56238 -32.67437 -32.18614 -31.76292 -30.05887 -27.33569 -26.84190 -26.77806 -26.64391 -24.82771 -23.51357 -23.21398 -22.88829 -21.57912 -21.01127 -19.47349 -18.69787 -18.25356 -17.25707 -17.00434 -16.92170 -16.35981 -15.90937 -15.87376 -15.79969 -15.61541 -15.32055 -15.14794 -15.01172 -14.66053 -14.41216 -14.22232 -14.16296 -13.84717 -13.64645 -13.49261 -13.06333 -12.77602 -12.60689 -12.54464 -12.47516 -12.43938 -12.21430 -12.15792 -12.05188 -12.04240 -11.90762 -11.80581 -11.73241 -11.35023 -11.32641 -11.20774 -10.88495 -10.56332 -10.09564 -9.78758 -9.57248 -8.64878 -7.87693 -5.42812 0.40404 0.53737 1.40657 1.42093 1.47321 1.55937 2.07936 2.50412 2.79998 3.12068 3.20374 3.21894 3.38536 3.45749 3.54692 3.63305 3.78018 4.02080 4.17596 4.21360 4.26509 4.34213 4.35525 4.38380 4.53002 4.55812 4.59134 4.65635 4.67770 4.72400 4.74512 4.77372 4.82688 4.88640 4.89851 4.93584 4.96707 5.07521 5.15756 5.20044 5.22026 5.23185 5.27941 5.37445 5.46375 5.60888 5.63692 5.66228 5.66416 5.72678 5.79557 6.13432 6.42892 6.56100 7.12460 7.20380 7.82563 8.32637 9.10670 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013552 B = 0.002153 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.552969 B =13002.356953 C =13772.541435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.130 4.130 3 C 0.143 3.857 4 N -0.597 5.597 5 C -0.265 4.265 6 H 0.055 0.945 7 C -0.033 4.033 8 N -0.909 5.909 9 Si 0.949 3.051 10 H -0.274 1.274 11 H -0.289 1.289 12 H -0.290 1.290 13 C 0.145 3.855 14 C 0.118 3.882 15 N -0.703 5.703 16 C 0.567 3.433 17 O -0.587 6.587 18 C -0.182 4.182 19 C -0.089 4.089 20 C -0.067 4.067 21 C -0.039 4.039 22 C -0.116 4.116 23 C -0.125 4.125 24 C -0.126 4.126 25 C -0.126 4.126 26 C -0.121 4.121 27 C -0.080 4.080 28 C -0.087 4.087 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.040 0.960 33 H 0.032 0.968 34 H 0.042 0.958 35 H 0.051 0.949 36 H 0.253 0.747 37 H 0.039 0.961 38 H 0.083 0.917 39 H 0.032 0.968 40 H 0.047 0.953 41 H 0.412 0.588 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.132 0.868 45 H 0.142 0.858 46 H 0.143 0.857 47 H 0.140 0.860 48 H 0.125 0.875 49 H 0.083 0.917 50 H 0.101 0.899 51 H 0.099 0.901 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.260 4.826 -22.881 23.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.170 4.170 3 C 0.018 3.982 4 N -0.317 5.317 5 C -0.395 4.395 6 H 0.073 0.927 7 C -0.230 4.230 8 N -0.553 5.553 9 Si 0.778 3.222 10 H -0.199 1.199 11 H -0.215 1.215 12 H -0.217 1.217 13 C 0.017 3.983 14 C -0.008 4.008 15 N -0.353 5.353 16 C 0.354 3.646 17 O -0.468 6.468 18 C -0.185 4.185 19 C -0.126 4.126 20 C -0.067 4.067 21 C -0.039 4.039 22 C -0.134 4.134 23 C -0.143 4.143 24 C -0.144 4.144 25 C -0.144 4.144 26 C -0.139 4.139 27 C -0.117 4.117 28 C -0.124 4.124 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.100 0.900 39 H 0.051 0.949 40 H 0.065 0.935 41 H 0.248 0.752 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.150 0.850 45 H 0.160 0.840 46 H 0.160 0.840 47 H 0.158 0.842 48 H 0.143 0.857 49 H 0.101 0.899 50 H 0.119 0.881 51 H 0.117 0.883 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.091 5.449 -22.483 23.493 hybrid contribution 0.768 -0.114 1.135 1.376 sum 4.859 5.335 -21.348 22.534 Atomic orbital electron populations 1.21667 0.94267 1.01717 1.01941 1.21906 0.96055 0.99042 0.99987 1.21101 0.83336 0.94639 0.99127 1.43932 1.00919 1.85115 1.01783 1.19285 1.03302 1.25837 0.91113 0.92717 1.25632 1.01821 0.95449 1.00120 1.70069 1.23574 1.21255 1.40446 0.85500 0.79465 0.77700 0.79545 1.19878 1.21542 1.21654 1.20915 0.99997 0.91043 0.86298 1.21900 0.94394 1.01107 0.83393 1.45840 1.56919 1.09077 1.23502 1.19157 0.78200 0.83074 0.84135 1.90659 1.54834 1.33213 1.68050 1.24137 0.99548 1.02442 0.92409 1.23819 0.99902 0.94863 0.94036 1.22168 0.95700 0.97160 0.91641 1.18382 0.98614 0.94165 0.92758 1.21155 0.98257 0.97832 0.96159 1.21442 0.98440 0.99207 0.95237 1.21519 0.99738 0.92399 1.00731 1.21415 0.98120 0.99463 0.95426 1.21173 0.99088 0.97542 0.96093 1.24575 0.96398 1.00991 0.89723 1.24150 0.92885 1.01874 0.93504 0.91993 0.92428 0.92616 0.94123 0.94935 0.94002 0.93026 0.93788 0.94229 0.89979 0.94900 0.93485 0.75199 0.90804 0.90157 0.84959 0.83994 0.83956 0.84182 0.85676 0.89890 0.88107 0.88286 0.90856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 9.91 71.98 0.71 -3.20 16 2 C -0.13 -4.94 6.26 30.60 0.19 -4.75 16 3 C 0.14 5.86 5.69 86.38 0.49 6.35 16 4 N -0.60 -28.89 2.45 -701.99 -1.72 -30.61 16 5 C -0.27 -14.30 9.49 84.03 0.80 -13.50 16 6 H 0.06 3.00 7.92 -2.91 -0.02 2.97 16 7 C -0.03 -1.77 4.93 84.86 0.42 -1.35 16 8 N -0.91 -50.49 11.32 21.65 0.25 -50.24 16 9 Si 0.95 44.34 29.61 68.60 2.03 46.37 16 10 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 12 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 13 C 0.14 6.42 5.37 86.38 0.46 6.89 16 14 C 0.12 4.87 6.00 86.38 0.52 5.39 16 15 N -0.70 -23.73 5.56 -463.07 -2.57 -26.30 16 16 C 0.57 19.61 7.94 87.66 0.70 20.31 16 17 O -0.59 -25.48 17.10 -3.01 -0.05 -25.53 16 18 C -0.18 -4.58 3.50 -62.85 -0.22 -4.80 16 19 C -0.09 -1.98 7.33 30.61 0.22 -1.75 16 20 C -0.07 -1.23 3.09 -63.67 -0.20 -1.43 16 21 C -0.04 -0.68 5.88 -19.87 -0.12 -0.80 16 22 C -0.12 -1.77 9.74 22.27 0.22 -1.55 16 23 C -0.13 -1.61 10.05 22.27 0.22 -1.39 16 24 C -0.13 -1.53 10.05 22.27 0.22 -1.31 16 25 C -0.13 -1.69 10.05 22.27 0.22 -1.46 16 26 C -0.12 -1.96 9.66 22.27 0.22 -1.75 16 27 C -0.08 -1.49 7.95 31.90 0.25 -1.24 16 28 C -0.09 -1.78 7.84 31.08 0.24 -1.53 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.04 1.71 8.04 -2.38 -0.02 1.69 16 35 H 0.05 1.91 8.07 -2.39 -0.02 1.89 16 36 H 0.25 13.55 8.31 -92.71 -0.77 12.78 16 37 H 0.04 1.63 8.10 -2.39 -0.02 1.61 16 38 H 0.08 4.12 5.32 -2.39 -0.01 4.11 16 39 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.41 11.62 8.47 -92.71 -0.79 10.84 16 42 H 0.07 1.68 7.94 -2.39 -0.02 1.67 16 43 H 0.08 1.74 7.91 -2.38 -0.02 1.72 16 44 H 0.13 1.69 8.06 -2.91 -0.02 1.66 16 45 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 46 H 0.14 1.04 8.06 -2.91 -0.02 1.02 16 47 H 0.14 1.27 8.06 -2.92 -0.02 1.25 16 48 H 0.13 1.87 7.75 -2.92 -0.02 1.85 16 49 H 0.08 1.52 7.91 -2.39 -0.02 1.50 16 50 H 0.10 1.55 7.97 -2.39 -0.02 1.53 16 51 H 0.10 1.72 7.97 -2.38 -0.02 1.71 16 52 H 0.07 1.58 7.93 -2.39 -0.02 1.56 16 Total: -1.00 -66.72 426.90 3.62 -63.11 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: 0.10 Total: 26.08 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: 5.58 Total: -2.87 kcal Atomic # 7 Polarization: -103.11 SS G_CDS: -4.05 Total: -107.16 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.05 Total: -25.53 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -66.72 3.62 -63.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691198380.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.013 kcal (2) G-P(sol) polarization free energy of solvation -66.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds