Wall clock time and date at job start Wed Apr 1 2020 02:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.46963 * 2 1 4 4 N 1.46501 * 109.47319 * 179.97438 * 3 2 1 5 5 C 1.34774 * 120.00147 * 274.93813 * 4 3 2 6 6 O 1.21283 * 120.00414 * 175.26619 * 5 4 3 7 7 C 1.50704 * 119.99742 * 355.26669 * 5 4 3 8 8 C 1.54353 * 110.82001 * 267.92463 * 7 5 4 9 9 C 1.51366 * 105.17172 * 215.42998 * 8 7 5 10 10 C 1.38493 * 130.38878 * 197.16853 * 9 8 7 11 11 C 1.38105 * 120.21488 * 180.02562 * 10 9 8 12 12 C 1.38248 * 119.93317 * 359.97438 * 11 10 9 13 13 C 1.38110 * 119.93648 * 359.97438 * 12 11 10 14 14 C 1.38216 * 109.75693 * 17.19466 * 9 8 7 15 15 C 1.51367 * 109.76103 * 359.97438 * 14 9 8 16 16 C 1.46506 * 120.00048 * 94.92839 * 4 3 2 17 17 H 1.09003 * 110.64058 * 356.86537 * 16 4 3 18 18 C 1.55150 * 110.71661 * 120.00580 * 16 4 3 19 19 C 1.54909 * 101.58076 * 153.86779 * 18 16 4 20 20 N 1.47424 * 104.83080 * 322.98981 * 19 18 16 21 21 C 1.36939 * 125.64721 * 204.09096 * 20 19 18 22 22 H 1.08000 * 120.00240 * 354.99603 * 21 20 19 23 23 C 1.38816 * 120.00021 * 174.99138 * 21 20 19 24 24 N 1.31619 * 119.99532 * 5.08823 * 23 21 20 25 25 Si 1.86795 * 120.00131 * 185.09010 * 23 21 20 26 26 H 1.48498 * 109.47320 * 94.99791 * 25 23 21 27 27 H 1.48497 * 109.47356 * 215.00074 * 25 23 21 28 28 H 1.48507 * 109.47081 * 334.99828 * 25 23 21 29 29 C 1.47019 * 108.70300 * 24.12943 * 20 19 18 30 30 H 1.09001 * 109.47270 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47572 * 299.99959 * 1 2 3 32 32 H 1.09002 * 109.46704 * 60.00236 * 1 2 3 33 33 H 1.08997 * 109.46831 * 239.99503 * 2 1 3 34 34 H 1.09002 * 109.46704 * 119.99764 * 2 1 3 35 35 H 1.09005 * 109.47594 * 59.99853 * 3 2 1 36 36 H 1.09002 * 109.47218 * 299.99449 * 3 2 1 37 37 H 1.08989 * 110.73227 * 31.54916 * 7 5 4 38 38 H 1.08999 * 110.30145 * 334.35966 * 8 7 5 39 39 H 1.08997 * 110.29869 * 96.50289 * 8 7 5 40 40 H 1.08003 * 119.89430 * 0.03266 * 10 9 8 41 41 H 1.08004 * 120.03269 * 179.97438 * 11 10 9 42 42 H 1.08002 * 120.03541 * 180.02562 * 12 11 10 43 43 H 1.08005 * 119.89257 * 180.02562 * 13 12 11 44 44 H 1.09007 * 110.30148 * 223.89383 * 15 14 9 45 45 H 1.08996 * 110.30497 * 101.73975 * 15 14 9 46 46 H 1.08999 * 111.01175 * 35.79289 * 18 16 4 47 47 H 1.09007 * 111.03923 * 271.95086 * 18 16 4 48 48 H 1.09003 * 110.36754 * 81.82840 * 19 18 16 49 49 H 1.09000 * 110.36672 * 204.14708 * 19 18 16 50 50 H 0.97006 * 119.99419 * 179.97438 * 24 23 21 51 51 H 1.09002 * 109.87793 * 239.52392 * 29 20 19 52 52 H 1.08998 * 110.01056 * 118.43130 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1784 1.3423 1.1637 6 8 5.3881 1.2558 1.1586 7 6 3.4282 1.3376 2.4708 8 6 3.3031 2.7681 3.0367 9 6 3.4030 2.6100 4.5388 10 6 3.0506 3.4789 5.5580 11 6 3.2360 3.1146 6.8771 12 6 3.7746 1.8784 7.1822 13 6 4.1258 1.0101 6.1672 14 6 3.9421 1.3744 4.8437 15 6 4.2408 0.6173 3.5675 16 6 4.2381 1.5514 -1.2632 17 1 3.5485 1.5680 -2.1072 18 6 5.1409 2.8131 -1.2670 19 6 6.2520 2.3974 -2.2631 20 7 6.4725 0.9627 -2.0053 21 6 7.6215 0.2700 -2.2793 22 1 8.4354 0.7568 -2.7961 23 6 7.7402 -1.0580 -1.8929 24 7 6.7137 -1.6806 -1.3535 25 14 9.3567 -1.9613 -2.1384 26 1 10.1555 -1.8952 -0.8883 27 1 9.0840 -3.3811 -2.4771 28 1 10.1160 -1.3255 -3.2451 29 6 5.2542 0.3988 -1.4060 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6767 1.9562 -0.8900 37 1 2.4472 0.8780 2.3509 38 1 4.1159 3.3934 2.6672 39 1 2.3397 3.1994 2.7650 40 1 2.6292 4.4446 5.3205 41 1 2.9605 3.7947 7.6696 42 1 3.9200 1.5916 8.2133 43 1 4.5462 0.0444 6.4063 44 1 3.9177 -0.4198 3.6585 45 1 5.3058 0.6640 3.3404 46 1 5.5546 3.0007 -0.2762 47 1 4.5953 3.6836 -1.6315 48 1 5.9186 2.5515 -3.2894 49 1 7.1644 2.9620 -2.0710 50 1 6.7966 -2.6087 -1.0838 51 1 5.4824 -0.0180 -0.4250 52 1 4.8455 -0.3778 -2.0526 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691864973.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:20 Heat of formation + Delta-G solvation = 19.216943 kcal Electronic energy + Delta-G solvation = -31169.500736 eV Core-core repulsion = 27327.369228 eV Total energy + Delta-G solvation = -3842.131508 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.68808 -39.39115 -36.88158 -35.80750 -35.19749 -32.85695 -31.80047 -31.48082 -29.64331 -28.56919 -27.41134 -27.25286 -25.85990 -24.55864 -23.29226 -21.85442 -21.28393 -21.00548 -20.34596 -20.03589 -18.26692 -16.96362 -16.72638 -16.32827 -16.10407 -15.38848 -15.09030 -14.81501 -14.60897 -14.38352 -14.18816 -13.78060 -13.40275 -13.37109 -13.20041 -13.01456 -12.91654 -12.64502 -12.33150 -12.26436 -12.17873 -11.95476 -11.61738 -11.53801 -11.36882 -11.27009 -11.12162 -10.95195 -10.84497 -10.81583 -10.79737 -10.69068 -10.65812 -10.27959 -10.01346 -9.84617 -9.53813 -8.98195 -8.87585 -8.54279 -8.34385 -8.05478 -6.62421 -5.55971 -2.86866 1.27969 1.31551 3.03575 3.33340 3.49490 3.54497 3.55790 3.68792 4.35442 4.44670 4.63362 4.77996 4.89016 4.91685 4.93208 4.99236 5.02131 5.17919 5.24017 5.32553 5.40367 5.43267 5.51698 5.52233 5.57442 5.59920 5.67049 5.71704 5.73139 5.75924 5.80859 5.90641 5.98885 6.01972 6.02991 6.07764 6.09073 6.19697 6.27281 6.34965 6.37155 6.41188 6.41915 6.61066 6.64726 6.75570 6.87103 6.92646 7.15548 7.64254 7.80979 7.88947 8.12635 8.45456 8.73942 9.37549 9.99231 10.65669 11.55694 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010523 B = 0.003499 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.206814 B = 8001.219408 C = 9148.729571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.148 4.148 3 C 0.111 3.889 4 N -0.602 5.602 5 C 0.516 3.484 6 O -0.495 6.495 7 C -0.111 4.111 8 C -0.064 4.064 9 C -0.096 4.096 10 C -0.107 4.107 11 C -0.126 4.126 12 C -0.121 4.121 13 C -0.109 4.109 14 C -0.084 4.084 15 C -0.073 4.073 16 C 0.118 3.882 17 H 0.081 0.919 18 C -0.141 4.141 19 C 0.138 3.862 20 N -0.598 5.598 21 C -0.223 4.223 22 H 0.076 0.924 23 C -0.006 4.006 24 N -0.916 5.916 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.293 1.293 28 H -0.282 1.282 29 C 0.171 3.829 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.078 0.922 45 H 0.105 0.895 46 H 0.076 0.924 47 H 0.054 0.946 48 H 0.015 0.985 49 H 0.038 0.962 50 H 0.249 0.751 51 H 0.082 0.918 52 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.772 9.035 12.120 21.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.186 4.186 3 C -0.012 4.012 4 N -0.335 5.335 5 C 0.302 3.698 6 O -0.368 6.368 7 C -0.133 4.133 8 C -0.102 4.102 9 C -0.096 4.096 10 C -0.125 4.125 11 C -0.144 4.144 12 C -0.139 4.139 13 C -0.127 4.127 14 C -0.084 4.084 15 C -0.111 4.111 16 C 0.014 3.986 17 H 0.099 0.901 18 C -0.180 4.180 19 C 0.011 3.989 20 N -0.325 5.325 21 C -0.352 4.352 22 H 0.094 0.906 23 C -0.202 4.202 24 N -0.564 5.564 25 Si 0.738 3.262 26 H -0.218 1.218 27 H -0.219 1.219 28 H -0.208 1.208 29 C 0.045 3.955 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.097 0.903 45 H 0.123 0.877 46 H 0.095 0.905 47 H 0.072 0.928 48 H 0.032 0.968 49 H 0.056 0.944 50 H 0.059 0.941 51 H 0.099 0.901 52 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -15.010 8.770 12.120 21.192 hybrid contribution 0.662 -0.585 -0.094 0.888 sum -14.348 8.185 12.026 20.432 Atomic orbital electron populations 1.21703 0.95465 1.01854 1.01569 1.22041 0.95626 0.97438 1.03531 1.21615 0.80262 0.96755 1.02603 1.47857 1.05723 1.73450 1.06483 1.20104 0.88072 0.77126 0.84525 1.90838 1.13495 1.46055 1.86435 1.22059 1.00416 0.97303 0.93496 1.20895 1.02840 0.95859 0.90563 1.20532 0.99199 0.94805 0.95050 1.20585 1.00796 0.99113 0.91987 1.20986 1.00573 0.96851 0.96002 1.21017 0.99715 0.94303 0.98875 1.20652 1.00610 1.00015 0.91385 1.20651 0.97686 0.95712 0.94356 1.21034 1.02639 0.98373 0.89012 1.22548 0.94111 0.98545 0.83358 0.90122 1.23081 0.97600 0.95972 1.01362 1.21475 0.95441 0.87318 0.94661 1.44260 1.12493 1.02984 1.72761 1.19023 0.91944 0.93238 1.30978 0.90621 1.24772 0.97530 0.96928 1.01019 1.69971 1.28402 1.10564 1.47467 0.86167 0.83459 0.79021 0.77544 1.21751 1.21929 1.20772 1.21503 0.83768 0.89917 1.00286 0.92559 0.92859 0.92671 0.90868 0.91662 0.90958 0.90455 0.88310 0.89581 0.90302 0.86354 0.86096 0.86057 0.86164 0.90346 0.87706 0.90543 0.92771 0.96776 0.94391 0.94109 0.90055 0.95168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.16 0.37 -0.91 16 2 C -0.15 -1.68 6.03 -26.73 -0.16 -1.84 16 3 C 0.11 1.27 5.02 -4.05 -0.02 1.25 16 4 N -0.60 -9.65 2.55 -164.03 -0.42 -10.07 16 5 C 0.52 9.03 5.83 -10.98 -0.06 8.97 16 6 O -0.50 -11.31 12.03 5.55 0.07 -11.24 16 7 C -0.11 -1.49 2.50 -90.36 -0.23 -1.71 16 8 C -0.06 -0.76 6.19 -26.85 -0.17 -0.92 16 9 C -0.10 -1.16 6.14 -104.21 -0.64 -1.80 16 10 C -0.11 -1.12 10.04 -39.54 -0.40 -1.52 16 11 C -0.13 -1.23 10.05 -39.63 -0.40 -1.62 16 12 C -0.12 -1.22 10.05 -39.62 -0.40 -1.62 16 13 C -0.11 -1.25 10.04 -39.53 -0.40 -1.65 16 14 C -0.08 -1.09 6.14 -104.21 -0.64 -1.73 16 15 C -0.07 -1.04 6.26 -26.86 -0.17 -1.21 16 16 C 0.12 2.25 3.44 -66.10 -0.23 2.02 16 17 H 0.08 1.39 7.83 -51.93 -0.41 0.98 16 18 C -0.14 -2.68 6.45 -24.59 -0.16 -2.84 16 19 C 0.14 3.06 7.23 -2.53 -0.02 3.04 16 20 N -0.60 -16.28 3.39 -170.07 -0.58 -16.86 16 21 C -0.22 -6.61 10.27 -15.06 -0.15 -6.76 16 22 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 23 C -0.01 -0.19 5.48 -17.43 -0.10 -0.28 16 24 N -0.92 -28.22 10.34 55.49 0.57 -27.64 16 25 Si 0.91 23.26 29.56 -169.99 -5.02 18.24 16 26 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 27 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 28 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 29 C 0.17 4.34 4.59 -3.07 -0.01 4.32 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.80 7.22 -51.93 -0.38 0.42 16 35 H 0.07 0.67 6.36 -51.93 -0.33 0.34 16 36 H 0.08 0.78 7.88 -51.93 -0.41 0.37 16 37 H 0.10 1.13 5.63 -51.94 -0.29 0.84 16 38 H 0.09 1.13 7.89 -51.93 -0.41 0.72 16 39 H 0.08 0.74 7.96 -51.93 -0.41 0.32 16 40 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 41 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 42 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 44 H 0.08 1.03 8.14 -51.92 -0.42 0.61 16 45 H 0.10 1.80 6.90 -51.93 -0.36 1.44 16 46 H 0.08 1.60 6.41 -51.93 -0.33 1.26 16 47 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 48 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 49 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 51 H 0.08 2.34 4.78 -51.93 -0.25 2.09 16 52 H 0.03 0.85 7.64 -51.93 -0.40 0.45 16 LS Contribution 400.87 15.07 6.04 6.04 Total: -1.00 -34.85 400.87 -11.91 -46.75 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -8.59 Total: 1.60 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -3.98 Total: -6.82 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: -0.42 Total: -54.57 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.07 Total: -11.24 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -5.02 Total: 18.24 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.85 -11.91 -46.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691864973.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.971 kcal (2) G-P(sol) polarization free energy of solvation -34.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds