Wall clock time and date at job start Wed Apr 1 2020 02:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.46963 * 2 1 4 4 N 1.46501 * 109.47319 * 179.97438 * 3 2 1 5 5 C 1.34774 * 120.00147 * 274.93813 * 4 3 2 6 6 O 1.21283 * 120.00414 * 175.26619 * 5 4 3 7 7 C 1.50704 * 119.99742 * 355.26669 * 5 4 3 8 8 C 1.54353 * 110.82001 * 267.92463 * 7 5 4 9 9 C 1.51366 * 105.17172 * 215.42998 * 8 7 5 10 10 C 1.38493 * 130.38878 * 197.16853 * 9 8 7 11 11 C 1.38105 * 120.21488 * 180.02562 * 10 9 8 12 12 C 1.38248 * 119.93317 * 359.97438 * 11 10 9 13 13 C 1.38110 * 119.93648 * 359.97438 * 12 11 10 14 14 C 1.38216 * 109.75693 * 17.19466 * 9 8 7 15 15 C 1.51367 * 109.76103 * 359.97438 * 14 9 8 16 16 C 1.46506 * 120.00048 * 94.92839 * 4 3 2 17 17 H 1.09003 * 110.64058 * 356.86537 * 16 4 3 18 18 C 1.55150 * 110.71661 * 120.00580 * 16 4 3 19 19 C 1.54909 * 101.58076 * 153.86779 * 18 16 4 20 20 N 1.47424 * 104.83080 * 322.98981 * 19 18 16 21 21 C 1.36939 * 125.64721 * 204.09096 * 20 19 18 22 22 H 1.08000 * 120.00240 * 354.99603 * 21 20 19 23 23 C 1.38816 * 120.00021 * 174.99138 * 21 20 19 24 24 N 1.31619 * 119.99532 * 5.08823 * 23 21 20 25 25 Si 1.86795 * 120.00131 * 185.09010 * 23 21 20 26 26 H 1.48498 * 109.47320 * 94.99791 * 25 23 21 27 27 H 1.48497 * 109.47356 * 215.00074 * 25 23 21 28 28 H 1.48507 * 109.47081 * 334.99828 * 25 23 21 29 29 C 1.47019 * 108.70300 * 24.12943 * 20 19 18 30 30 H 1.09001 * 109.47270 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47572 * 299.99959 * 1 2 3 32 32 H 1.09002 * 109.46704 * 60.00236 * 1 2 3 33 33 H 1.08997 * 109.46831 * 239.99503 * 2 1 3 34 34 H 1.09002 * 109.46704 * 119.99764 * 2 1 3 35 35 H 1.09005 * 109.47594 * 59.99853 * 3 2 1 36 36 H 1.09002 * 109.47218 * 299.99449 * 3 2 1 37 37 H 1.08989 * 110.73227 * 31.54916 * 7 5 4 38 38 H 1.08999 * 110.30145 * 334.35966 * 8 7 5 39 39 H 1.08997 * 110.29869 * 96.50289 * 8 7 5 40 40 H 1.08003 * 119.89430 * 0.03266 * 10 9 8 41 41 H 1.08004 * 120.03269 * 179.97438 * 11 10 9 42 42 H 1.08002 * 120.03541 * 180.02562 * 12 11 10 43 43 H 1.08005 * 119.89257 * 180.02562 * 13 12 11 44 44 H 1.09007 * 110.30148 * 223.89383 * 15 14 9 45 45 H 1.08996 * 110.30497 * 101.73975 * 15 14 9 46 46 H 1.08999 * 111.01175 * 35.79289 * 18 16 4 47 47 H 1.09007 * 111.03923 * 271.95086 * 18 16 4 48 48 H 1.09003 * 110.36754 * 81.82840 * 19 18 16 49 49 H 1.09000 * 110.36672 * 204.14708 * 19 18 16 50 50 H 0.97006 * 119.99419 * 179.97438 * 24 23 21 51 51 H 1.09002 * 109.87793 * 239.52392 * 29 20 19 52 52 H 1.08998 * 110.01056 * 118.43130 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1784 1.3423 1.1637 6 8 5.3881 1.2558 1.1586 7 6 3.4282 1.3376 2.4708 8 6 3.3031 2.7681 3.0367 9 6 3.4030 2.6100 4.5388 10 6 3.0506 3.4789 5.5580 11 6 3.2360 3.1146 6.8771 12 6 3.7746 1.8784 7.1822 13 6 4.1258 1.0101 6.1672 14 6 3.9421 1.3744 4.8437 15 6 4.2408 0.6173 3.5675 16 6 4.2381 1.5514 -1.2632 17 1 3.5485 1.5680 -2.1072 18 6 5.1409 2.8131 -1.2670 19 6 6.2520 2.3974 -2.2631 20 7 6.4725 0.9627 -2.0053 21 6 7.6215 0.2700 -2.2793 22 1 8.4354 0.7568 -2.7961 23 6 7.7402 -1.0580 -1.8929 24 7 6.7137 -1.6806 -1.3535 25 14 9.3567 -1.9613 -2.1384 26 1 10.1555 -1.8952 -0.8883 27 1 9.0840 -3.3811 -2.4771 28 1 10.1160 -1.3255 -3.2451 29 6 5.2542 0.3988 -1.4060 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6767 1.9562 -0.8900 37 1 2.4472 0.8780 2.3509 38 1 4.1159 3.3934 2.6672 39 1 2.3397 3.1994 2.7650 40 1 2.6292 4.4446 5.3205 41 1 2.9605 3.7947 7.6696 42 1 3.9200 1.5916 8.2133 43 1 4.5462 0.0444 6.4063 44 1 3.9177 -0.4198 3.6585 45 1 5.3058 0.6640 3.3404 46 1 5.5546 3.0007 -0.2762 47 1 4.5953 3.6836 -1.6315 48 1 5.9186 2.5515 -3.2894 49 1 7.1644 2.9620 -2.0710 50 1 6.7966 -2.6087 -1.0838 51 1 5.4824 -0.0180 -0.4250 52 1 4.8455 -0.3778 -2.0526 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691864973.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:22:19 Heat of formation + Delta-G solvation = -0.125748 kcal Electronic energy + Delta-G solvation = -31170.339498 eV Core-core repulsion = 27327.369228 eV Total energy + Delta-G solvation = -3842.970270 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.85933 -40.53124 -38.51431 -37.07595 -36.29478 -34.54215 -33.34392 -32.34020 -31.05427 -30.11823 -29.00093 -28.27421 -26.93251 -26.47027 -24.53803 -22.85065 -22.32293 -21.99554 -21.85668 -21.65263 -19.57321 -18.86032 -18.22079 -17.42861 -17.14059 -16.79532 -16.42976 -16.03392 -15.92081 -15.61538 -15.47449 -15.39779 -14.82958 -14.44089 -14.18801 -14.17851 -14.08173 -13.94073 -13.72869 -13.61487 -13.29322 -13.20661 -13.06558 -12.90772 -12.76739 -12.73370 -12.50102 -12.24776 -12.16684 -12.13407 -12.02036 -11.98743 -11.85545 -11.82345 -11.67483 -11.62358 -11.42565 -10.78322 -10.29493 -9.70770 -9.46979 -9.42622 -8.81202 -7.82541 -5.15915 0.44013 0.48657 1.39243 1.43720 1.51359 1.70450 2.05009 2.49133 2.85301 3.33063 3.36225 3.42722 3.72424 3.79870 3.95072 3.96877 4.03513 4.11254 4.13811 4.17802 4.18649 4.30527 4.31544 4.32994 4.45351 4.59097 4.60317 4.63727 4.65933 4.71914 4.73020 4.75396 4.84641 4.87305 4.95443 5.00136 5.03183 5.07675 5.16575 5.22605 5.24574 5.28997 5.34125 5.42863 5.50170 5.55578 5.57591 5.62429 5.72692 5.74288 6.06646 6.12704 6.28800 6.58722 7.12602 7.39196 7.82758 8.46725 9.27024 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010523 B = 0.003499 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.206814 B = 8001.219408 C = 9148.729571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.146 4.146 3 C 0.106 3.894 4 N -0.598 5.598 5 C 0.511 3.489 6 O -0.559 6.559 7 C -0.100 4.100 8 C -0.056 4.056 9 C -0.107 4.107 10 C -0.109 4.109 11 C -0.123 4.123 12 C -0.123 4.123 13 C -0.124 4.124 14 C -0.109 4.109 15 C -0.074 4.074 16 C 0.131 3.869 17 H 0.109 0.891 18 C -0.123 4.123 19 C 0.129 3.871 20 N -0.624 5.624 21 C -0.241 4.241 22 H 0.079 0.921 23 C -0.067 4.067 24 N -0.944 5.944 25 Si 0.975 3.025 26 H -0.294 1.294 27 H -0.291 1.291 28 H -0.264 1.264 29 C 0.180 3.820 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.042 0.958 34 H 0.050 0.950 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.124 0.876 38 H 0.068 0.932 39 H 0.115 0.885 40 H 0.144 0.856 41 H 0.152 0.848 42 H 0.146 0.854 43 H 0.123 0.877 44 H 0.076 0.924 45 H 0.062 0.938 46 H 0.053 0.947 47 H 0.103 0.897 48 H 0.035 0.965 49 H 0.033 0.967 50 H 0.241 0.759 51 H 0.041 0.959 52 H -0.012 1.012 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.533 11.737 13.119 25.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.185 4.185 3 C -0.015 4.015 4 N -0.330 5.330 5 C 0.299 3.701 6 O -0.437 6.437 7 C -0.121 4.121 8 C -0.093 4.093 9 C -0.107 4.107 10 C -0.127 4.127 11 C -0.141 4.141 12 C -0.141 4.141 13 C -0.142 4.142 14 C -0.109 4.109 15 C -0.112 4.112 16 C 0.026 3.974 17 H 0.127 0.873 18 C -0.162 4.162 19 C 0.004 3.996 20 N -0.351 5.351 21 C -0.370 4.370 22 H 0.097 0.903 23 C -0.260 4.260 24 N -0.593 5.593 25 Si 0.803 3.197 26 H -0.221 1.221 27 H -0.218 1.218 28 H -0.188 1.188 29 C 0.055 3.945 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.142 0.858 38 H 0.087 0.913 39 H 0.133 0.867 40 H 0.162 0.838 41 H 0.170 0.830 42 H 0.164 0.836 43 H 0.141 0.859 44 H 0.095 0.905 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.121 0.879 48 H 0.053 0.947 49 H 0.051 0.949 50 H 0.050 0.950 51 H 0.059 0.941 52 H 0.006 0.994 Dipole moment (debyes) X Y Z Total from point charges -17.821 11.512 13.101 24.935 hybrid contribution 1.539 -1.425 -0.372 2.130 sum -16.282 10.086 12.729 22.997 Atomic orbital electron populations 1.21651 0.92675 1.02304 1.03170 1.21999 0.97956 0.97146 1.01400 1.22004 0.76935 0.97142 1.05465 1.47940 1.07712 1.72417 1.04905 1.20838 0.87561 0.75565 0.86101 1.90814 1.16519 1.48911 1.87438 1.22018 1.00380 0.99038 0.90681 1.20854 1.04017 0.94026 0.90402 1.20653 0.99735 0.94769 0.95505 1.20922 1.00201 0.99735 0.91840 1.21417 0.99118 0.96923 0.96610 1.21361 0.98858 0.94224 0.99628 1.20875 1.01061 1.00865 0.91411 1.20613 0.99660 0.96480 0.94168 1.20917 1.00291 0.99071 0.90894 1.22259 0.93589 0.95658 0.85881 0.87309 1.22956 0.96550 0.97355 0.99364 1.21727 0.96685 0.84677 0.96548 1.44607 1.12431 1.05267 1.72752 1.19439 0.93106 0.93808 1.30682 0.90280 1.25657 1.00941 0.97975 1.01425 1.70233 1.30268 1.10235 1.48608 0.85109 0.79370 0.77615 0.77585 1.22129 1.21779 1.18844 1.21189 0.84876 0.91609 0.96862 0.92807 0.90811 0.91432 0.93897 0.93139 0.87666 0.87925 0.85778 0.91349 0.86710 0.83797 0.83011 0.83590 0.85874 0.90519 0.91988 0.92802 0.87889 0.94714 0.94854 0.94957 0.94096 0.99369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.91 71.98 0.71 -1.32 16 2 C -0.15 -3.18 6.03 30.59 0.18 -3.00 16 3 C 0.11 2.13 5.02 86.38 0.43 2.56 16 4 N -0.60 -18.91 2.55 -791.26 -2.02 -20.93 16 5 C 0.51 18.54 5.83 87.66 0.51 19.06 16 6 O -0.56 -27.56 12.03 -3.04 -0.04 -27.60 16 7 C -0.10 -2.68 2.50 -10.63 -0.03 -2.71 16 8 C -0.06 -1.22 6.19 30.52 0.19 -1.03 16 9 C -0.11 -2.42 6.14 -19.60 -0.12 -2.54 16 10 C -0.11 -1.96 10.04 22.30 0.22 -1.73 16 11 C -0.12 -1.97 10.05 22.24 0.22 -1.75 16 12 C -0.12 -2.20 10.05 22.24 0.22 -1.98 16 13 C -0.12 -2.84 10.04 22.30 0.22 -2.61 16 14 C -0.11 -2.86 6.14 -19.60 -0.12 -2.98 16 15 C -0.07 -2.27 6.26 30.51 0.19 -2.08 16 16 C 0.13 4.97 3.44 46.17 0.16 5.13 16 17 H 0.11 3.53 7.83 -2.39 -0.02 3.52 16 18 C -0.12 -4.56 6.45 31.98 0.21 -4.35 16 19 C 0.13 5.74 7.23 86.86 0.63 6.37 16 20 N -0.62 -35.33 3.39 -691.99 -2.35 -37.68 16 21 C -0.24 -14.83 10.27 84.03 0.86 -13.96 16 22 H 0.08 4.64 7.83 -2.91 -0.02 4.62 16 23 C -0.07 -4.16 5.48 84.86 0.47 -3.70 16 24 N -0.94 -61.76 10.34 21.65 0.22 -61.53 16 25 Si 0.97 49.72 29.56 68.60 2.03 51.75 16 26 H -0.29 -15.05 7.11 99.48 0.71 -14.34 16 27 H -0.29 -14.66 7.11 99.48 0.71 -13.95 16 28 H -0.26 -12.55 7.11 99.48 0.71 -11.84 16 29 C 0.18 9.69 4.59 86.73 0.40 10.09 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 33 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.05 1.23 7.22 -2.39 -0.02 1.21 16 35 H 0.11 1.48 6.36 -2.38 -0.02 1.47 16 36 H 0.10 1.62 7.88 -2.39 -0.02 1.60 16 37 H 0.12 2.65 5.63 -2.39 -0.01 2.63 16 38 H 0.07 1.76 7.89 -2.39 -0.02 1.74 16 39 H 0.11 1.65 7.96 -2.39 -0.02 1.63 16 40 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 41 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 42 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 43 H 0.12 2.58 8.06 -2.91 -0.02 2.56 16 44 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 45 H 0.06 2.41 6.90 -2.39 -0.02 2.40 16 46 H 0.05 2.26 6.41 -2.39 -0.02 2.25 16 47 H 0.10 2.83 8.14 -2.38 -0.02 2.81 16 48 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.24 15.37 8.31 -92.70 -0.77 14.60 16 51 H 0.04 2.54 4.78 -2.39 -0.01 2.53 16 52 H -0.01 -0.71 7.64 -2.39 -0.02 -0.73 16 Total: -1.00 -84.47 400.87 4.31 -80.16 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 0.90 Total: 18.38 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 5.57 Total: -2.54 kcal Atomic # 7 Polarization: -116.00 SS G_CDS: -4.14 Total: -120.14 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.04 Total: -27.60 kcal Atomic # 14 Polarization: 49.72 SS G_CDS: 2.03 Total: 51.75 kcal Total: -84.47 4.31 -80.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691864973.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.034 kcal (2) G-P(sol) polarization free energy of solvation -84.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds