Wall clock time and date at job start Wed Apr 1 2020 02:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47319 * 2 1 4 4 H 1.08995 * 109.47010 * 54.34787 * 3 2 1 5 5 C 1.52997 * 109.46935 * 294.34596 * 3 2 1 6 6 N 1.46499 * 109.46927 * 184.99687 * 5 3 2 7 7 C 1.34787 * 119.99902 * 180.02562 * 6 5 3 8 8 O 1.21281 * 119.99985 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99940 * 180.02562 * 7 6 5 10 10 H 1.08996 * 109.50879 * 55.08493 * 9 7 6 11 11 C 1.53103 * 109.50402 * 294.99997 * 9 7 6 12 12 N 1.47021 * 109.25409 * 183.17225 * 11 9 7 13 13 C 1.46896 * 110.99619 * 182.39130 * 12 11 9 14 14 C 1.47014 * 110.75373 * 58.61805 * 12 11 9 15 15 C 1.53094 * 109.29117 * 301.36420 * 14 12 11 16 16 O 1.43012 * 109.54169 * 175.19689 * 9 7 6 17 17 N 1.46903 * 109.47182 * 174.34698 * 3 2 1 18 18 C 1.46892 * 110.99978 * 272.72299 * 17 3 2 19 19 C 1.50700 * 109.47240 * 182.68175 * 18 17 3 20 20 O 1.21295 * 119.99906 * 359.97438 * 19 18 17 21 21 N 1.34774 * 120.00353 * 180.02562 * 19 18 17 22 22 C 1.37094 * 120.00190 * 179.97438 * 21 19 18 23 23 H 1.08004 * 119.99788 * 0.02562 * 22 21 19 24 24 C 1.38951 * 119.99992 * 179.97438 * 22 21 19 25 25 N 1.31406 * 120.00133 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99835 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47268 * 90.00781 * 26 24 22 28 28 H 1.48507 * 109.46719 * 210.00379 * 26 24 22 29 29 H 1.48496 * 109.47244 * 330.00168 * 26 24 22 30 30 H 1.09002 * 109.47218 * 182.68891 * 1 2 3 31 31 H 1.08998 * 109.46811 * 302.68315 * 1 2 3 32 32 H 1.08991 * 109.47299 * 62.68377 * 1 2 3 33 33 H 1.09001 * 109.47099 * 239.99851 * 2 1 3 34 34 H 1.08999 * 109.47303 * 120.00325 * 2 1 3 35 35 H 1.09008 * 109.47216 * 64.99936 * 5 3 2 36 36 H 1.09001 * 109.47738 * 304.99900 * 5 3 2 37 37 H 0.96991 * 120.00483 * 0.02562 * 6 5 3 38 38 H 1.08998 * 109.50440 * 63.24388 * 11 9 7 39 39 H 1.08997 * 109.54573 * 303.12880 * 11 9 7 40 40 H 1.09005 * 109.47713 * 292.41163 * 13 12 11 41 41 H 1.09003 * 109.47462 * 52.41426 * 13 12 11 42 42 H 1.09004 * 109.47178 * 172.41330 * 13 12 11 43 43 H 1.09003 * 109.50459 * 61.31452 * 14 12 11 44 44 H 1.08991 * 109.50929 * 181.40235 * 14 12 11 45 45 H 1.09007 * 109.50813 * 176.80493 * 15 14 12 46 46 H 1.09008 * 109.50402 * 296.92904 * 15 14 12 47 47 H 1.00902 * 110.99897 * 36.68124 * 17 3 2 48 48 H 1.09007 * 109.47381 * 302.67893 * 18 17 3 49 49 H 1.09003 * 109.47555 * 62.68117 * 18 17 3 50 50 H 0.97000 * 119.99742 * 359.97438 * 21 19 18 51 51 H 0.97005 * 120.00220 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8350 5 6 1.6494 2.1215 -1.3142 6 7 2.2388 3.4617 -1.3654 7 6 2.0273 4.2504 -2.4378 8 8 1.3488 3.8507 -3.3601 9 6 2.6341 5.6288 -2.4907 10 1 3.7118 5.5580 -2.3439 11 6 2.0241 6.4985 -1.3882 12 7 2.5631 7.8623 -1.4925 13 6 2.0453 8.7168 -0.4157 14 6 2.2674 8.4399 -2.8117 15 6 2.8749 7.5515 -3.9005 16 8 2.3634 6.2221 -3.7635 17 7 3.5027 1.4447 0.1364 18 6 3.8995 1.4253 1.5506 19 6 5.4015 1.4947 1.6519 20 8 6.0752 1.5538 0.6450 21 7 5.9964 1.4899 2.8613 22 6 7.3628 1.5524 2.9534 23 1 7.9625 1.6059 2.0567 24 6 7.9760 1.5480 4.2002 25 7 7.2463 1.4833 5.2911 26 14 9.8378 1.6339 4.3257 27 1 10.2641 3.0545 4.3971 28 1 10.2849 0.9209 5.5493 29 1 10.4445 0.9944 3.1307 30 1 -0.3634 -1.0265 0.0482 31 1 -0.3633 0.5549 0.8650 32 1 -0.3633 0.4716 -0.9130 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 0.5638 2.1995 -1.3743 36 1 2.0180 1.5302 -2.1524 37 1 2.7811 3.7816 -0.6276 38 1 2.2767 6.0809 -0.4136 39 1 0.9405 6.5257 -1.5028 40 1 0.9762 8.8744 -0.5590 41 1 2.2153 8.2326 0.5460 42 1 2.5599 9.6775 -0.4348 43 1 1.1877 8.4979 -2.9498 44 1 2.6968 9.4396 -2.8759 45 1 2.6097 7.9454 -4.8817 46 1 3.9598 7.5366 -3.7947 47 1 3.9138 0.6717 -0.3652 48 1 3.4610 2.2818 2.0629 49 1 3.5462 0.5045 2.0146 50 1 5.4577 1.4422 3.6665 51 1 7.6744 1.4799 6.1616 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698593664.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:33 Heat of formation + Delta-G solvation = -111.441008 kcal Electronic energy + Delta-G solvation = -30605.491830 eV Core-core repulsion = 26346.845304 eV Total energy + Delta-G solvation = -4258.646525 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.45681 -39.05606 -38.38099 -37.21757 -35.92361 -34.16577 -33.87234 -32.54886 -31.78698 -31.22962 -29.27657 -28.27096 -26.35421 -25.10063 -24.41843 -24.02598 -23.32148 -21.08448 -20.88638 -20.22383 -19.31561 -17.95988 -17.55381 -16.99332 -16.30469 -16.14709 -15.90963 -15.63235 -15.35509 -15.18737 -15.09209 -14.80553 -14.52603 -14.39181 -14.03167 -13.90236 -13.76075 -13.52099 -13.18170 -13.14024 -12.77717 -12.66706 -12.30294 -12.17057 -12.15338 -12.00215 -11.77991 -11.68436 -11.53624 -11.46604 -11.25676 -11.06876 -11.02300 -10.77979 -10.41764 -10.24713 -9.95777 -9.71335 -9.53894 -8.98660 -8.78547 -8.54351 -8.12880 -7.99499 -6.45051 -3.85848 2.56975 2.79157 3.15743 3.24802 3.30509 3.44059 3.86321 3.87287 4.02587 4.25993 4.47981 4.59688 4.60361 4.68253 4.74649 4.82242 4.91221 5.01319 5.02477 5.10157 5.14358 5.17482 5.18416 5.25176 5.26453 5.32225 5.40718 5.46000 5.55196 5.55509 5.61268 5.62853 5.73469 5.79944 5.84256 5.86692 6.00667 6.07695 6.22975 6.45498 6.50671 6.54569 6.81917 7.09414 7.52232 7.53320 7.57778 8.02871 8.24619 8.57615 9.14884 9.50739 10.02047 10.72590 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.008432 B = 0.002754 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3319.927214 B =10165.391064 C =12447.258641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.152 4.152 3 C 0.072 3.928 4 H 0.084 0.916 5 C 0.136 3.864 6 N -0.707 5.707 7 C 0.521 3.479 8 O -0.529 6.529 9 C 0.077 3.923 10 H 0.097 0.903 11 C 0.030 3.970 12 N -0.539 5.539 13 C 0.024 3.976 14 C 0.015 3.985 15 C 0.062 3.938 16 O -0.357 6.357 17 N -0.663 5.663 18 C 0.050 3.950 19 C 0.440 3.560 20 O -0.581 6.581 21 N -0.563 5.563 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.902 5.902 26 Si 0.929 3.071 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.269 1.269 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.410 0.590 38 H 0.094 0.906 39 H 0.048 0.952 40 H 0.027 0.973 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.044 0.956 44 H 0.089 0.911 45 H 0.103 0.897 46 H 0.064 0.936 47 H 0.354 0.646 48 H 0.085 0.915 49 H 0.045 0.955 50 H 0.392 0.608 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.228 8.978 -8.898 19.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.191 4.191 3 C -0.039 4.039 4 H 0.102 0.898 5 C 0.011 3.989 6 N -0.361 5.361 7 C 0.305 3.695 8 O -0.405 6.405 9 C 0.015 3.985 10 H 0.115 0.885 11 C -0.098 4.098 12 N -0.264 5.264 13 C -0.124 4.124 14 C -0.113 4.113 15 C -0.016 4.016 16 O -0.275 6.275 17 N -0.295 5.295 18 C -0.083 4.083 19 C 0.225 3.775 20 O -0.465 6.465 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.756 3.244 27 H -0.204 1.204 28 H -0.210 1.210 29 H -0.194 1.194 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.246 0.754 38 H 0.112 0.888 39 H 0.066 0.934 40 H 0.046 0.954 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.062 0.938 44 H 0.107 0.893 45 H 0.121 0.879 46 H 0.082 0.918 47 H 0.174 0.826 48 H 0.103 0.897 49 H 0.063 0.937 50 H 0.225 0.775 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.717 9.285 -10.194 20.167 hybrid contribution -0.034 -0.530 1.545 1.633 sum -14.751 8.755 -8.649 19.211 Atomic orbital electron populations 1.21780 0.95289 1.01831 1.02044 1.22216 0.96882 0.97153 1.02889 1.21931 0.89204 0.95242 0.97505 0.89785 1.21381 0.97347 0.82535 0.97604 1.45695 1.53446 1.15836 1.21079 1.19967 0.80961 0.86019 0.82567 1.90704 1.38629 1.74710 1.36460 1.21944 1.00710 0.90874 0.84933 0.88505 1.22684 0.98008 0.89643 0.99503 1.62189 1.59070 1.02082 1.03091 1.22406 0.97704 0.97723 0.94522 1.22856 0.99661 0.99359 0.89468 1.22771 0.98597 0.81759 0.98434 1.88119 1.78991 1.28639 1.31725 1.60148 1.05885 1.52204 1.11265 1.21728 0.95955 1.01065 0.89547 1.19795 0.88565 0.84671 0.84484 1.90541 1.65177 1.55178 1.35623 1.41864 1.07666 1.64194 1.06292 1.19698 0.81748 1.47413 0.94020 0.87923 1.25253 1.00552 0.97287 0.94790 1.69606 1.36229 1.50515 0.97982 0.85869 0.82272 0.78411 0.77821 1.20362 1.20951 1.19405 0.92699 0.92602 0.92304 0.91246 0.91290 0.91177 0.91435 0.75388 0.88758 0.93367 0.95408 0.90763 0.90861 0.93753 0.89303 0.87853 0.91770 0.82638 0.89673 0.93712 0.77520 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.62 37.16 0.36 -0.86 16 2 C -0.15 -1.42 5.38 -26.73 -0.14 -1.57 16 3 C 0.07 0.76 2.22 -67.71 -0.15 0.61 16 4 H 0.08 0.82 7.72 -51.93 -0.40 0.42 16 5 C 0.14 1.54 5.01 -4.04 -0.02 1.52 16 6 N -0.71 -8.55 5.35 -60.29 -0.32 -8.87 16 7 C 0.52 7.34 7.18 -10.98 -0.08 7.26 16 8 O -0.53 -9.43 16.51 -14.26 -0.24 -9.67 16 9 C 0.08 0.95 3.22 -27.83 -0.09 0.86 16 10 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 11 C 0.03 0.31 4.89 -3.71 -0.02 0.29 16 12 N -0.54 -5.21 4.99 -242.59 -1.21 -6.42 16 13 C 0.02 0.19 9.63 60.06 0.58 0.77 16 14 C 0.01 0.13 5.66 -3.71 -0.02 0.10 16 15 C 0.06 0.58 7.02 37.21 0.26 0.84 16 16 O -0.36 -4.80 10.01 -55.05 -0.55 -5.35 16 17 N -0.66 -9.24 5.28 -108.00 -0.57 -9.81 16 18 C 0.05 0.78 5.98 -4.98 -0.03 0.75 16 19 C 0.44 9.75 7.83 -10.99 -0.09 9.66 16 20 O -0.58 -15.07 15.84 5.54 0.09 -14.99 16 21 N -0.56 -13.68 5.29 -10.96 -0.06 -13.74 16 22 C -0.30 -8.13 9.68 -14.93 -0.14 -8.28 16 23 H 0.10 2.94 7.16 -52.48 -0.38 2.57 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.00 13.05 55.50 0.72 -23.27 16 26 Si 0.93 20.70 29.55 -169.99 -5.02 15.67 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 29 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.47 6.83 -51.93 -0.35 0.11 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.68 7.55 -51.93 -0.39 0.29 16 35 H 0.07 0.75 6.89 -51.92 -0.36 0.40 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.41 4.72 8.00 -40.82 -0.33 4.39 16 38 H 0.09 0.86 7.97 -51.93 -0.41 0.45 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 46 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 47 H 0.35 5.34 8.25 -39.29 -0.32 5.02 16 48 H 0.09 1.19 7.99 -51.92 -0.41 0.78 16 49 H 0.04 0.64 7.57 -51.93 -0.39 0.25 16 50 H 0.39 9.08 7.90 -40.82 -0.32 8.76 16 51 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 413.91 15.07 6.24 6.24 Total: -1.00 -33.50 413.91 -9.31 -42.81 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: -8.70 Total: 14.95 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: 0.32 Total: 12.46 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: -1.44 Total: -62.12 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.70 Total: -30.01 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.50 -9.31 -42.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698593664.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.632 kcal (2) G-P(sol) polarization free energy of solvation -33.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds