Wall clock time and date at job start Wed Apr 1 2020 02:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47319 * 2 1 4 4 H 1.08995 * 109.47010 * 54.34787 * 3 2 1 5 5 C 1.52997 * 109.46935 * 294.34596 * 3 2 1 6 6 N 1.46499 * 109.46927 * 184.99687 * 5 3 2 7 7 C 1.34787 * 119.99902 * 180.02562 * 6 5 3 8 8 O 1.21281 * 119.99985 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99940 * 180.02562 * 7 6 5 10 10 H 1.08996 * 109.50879 * 55.08493 * 9 7 6 11 11 C 1.53103 * 109.50402 * 294.99997 * 9 7 6 12 12 N 1.47021 * 109.25409 * 183.17225 * 11 9 7 13 13 C 1.46896 * 110.99619 * 182.39130 * 12 11 9 14 14 C 1.47014 * 110.75373 * 58.61805 * 12 11 9 15 15 C 1.53094 * 109.29117 * 301.36420 * 14 12 11 16 16 O 1.43012 * 109.54169 * 175.19689 * 9 7 6 17 17 N 1.46903 * 109.47182 * 174.34698 * 3 2 1 18 18 C 1.46892 * 110.99978 * 272.72299 * 17 3 2 19 19 C 1.50700 * 109.47240 * 182.68175 * 18 17 3 20 20 O 1.21295 * 119.99906 * 359.97438 * 19 18 17 21 21 N 1.34774 * 120.00353 * 180.02562 * 19 18 17 22 22 C 1.37094 * 120.00190 * 179.97438 * 21 19 18 23 23 H 1.08004 * 119.99788 * 0.02562 * 22 21 19 24 24 C 1.38951 * 119.99992 * 179.97438 * 22 21 19 25 25 N 1.31406 * 120.00133 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99835 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47268 * 90.00781 * 26 24 22 28 28 H 1.48507 * 109.46719 * 210.00379 * 26 24 22 29 29 H 1.48496 * 109.47244 * 330.00168 * 26 24 22 30 30 H 1.09002 * 109.47218 * 182.68891 * 1 2 3 31 31 H 1.08998 * 109.46811 * 302.68315 * 1 2 3 32 32 H 1.08991 * 109.47299 * 62.68377 * 1 2 3 33 33 H 1.09001 * 109.47099 * 239.99851 * 2 1 3 34 34 H 1.08999 * 109.47303 * 120.00325 * 2 1 3 35 35 H 1.09008 * 109.47216 * 64.99936 * 5 3 2 36 36 H 1.09001 * 109.47738 * 304.99900 * 5 3 2 37 37 H 0.96991 * 120.00483 * 0.02562 * 6 5 3 38 38 H 1.08998 * 109.50440 * 63.24388 * 11 9 7 39 39 H 1.08997 * 109.54573 * 303.12880 * 11 9 7 40 40 H 1.09005 * 109.47713 * 292.41163 * 13 12 11 41 41 H 1.09003 * 109.47462 * 52.41426 * 13 12 11 42 42 H 1.09004 * 109.47178 * 172.41330 * 13 12 11 43 43 H 1.09003 * 109.50459 * 61.31452 * 14 12 11 44 44 H 1.08991 * 109.50929 * 181.40235 * 14 12 11 45 45 H 1.09007 * 109.50813 * 176.80493 * 15 14 12 46 46 H 1.09008 * 109.50402 * 296.92904 * 15 14 12 47 47 H 1.00902 * 110.99897 * 36.68124 * 17 3 2 48 48 H 1.09007 * 109.47381 * 302.67893 * 18 17 3 49 49 H 1.09003 * 109.47555 * 62.68117 * 18 17 3 50 50 H 0.97000 * 119.99742 * 359.97438 * 21 19 18 51 51 H 0.97005 * 120.00220 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8350 5 6 1.6494 2.1215 -1.3142 6 7 2.2388 3.4617 -1.3654 7 6 2.0273 4.2504 -2.4378 8 8 1.3488 3.8507 -3.3601 9 6 2.6341 5.6288 -2.4907 10 1 3.7118 5.5580 -2.3439 11 6 2.0241 6.4985 -1.3882 12 7 2.5631 7.8623 -1.4925 13 6 2.0453 8.7168 -0.4157 14 6 2.2674 8.4399 -2.8117 15 6 2.8749 7.5515 -3.9005 16 8 2.3634 6.2221 -3.7635 17 7 3.5027 1.4447 0.1364 18 6 3.8995 1.4253 1.5506 19 6 5.4015 1.4947 1.6519 20 8 6.0752 1.5538 0.6450 21 7 5.9964 1.4899 2.8613 22 6 7.3628 1.5524 2.9534 23 1 7.9625 1.6059 2.0567 24 6 7.9760 1.5480 4.2002 25 7 7.2463 1.4833 5.2911 26 14 9.8378 1.6339 4.3257 27 1 10.2641 3.0545 4.3971 28 1 10.2849 0.9209 5.5493 29 1 10.4445 0.9944 3.1307 30 1 -0.3634 -1.0265 0.0482 31 1 -0.3633 0.5549 0.8650 32 1 -0.3633 0.4716 -0.9130 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 0.5638 2.1995 -1.3743 36 1 2.0180 1.5302 -2.1524 37 1 2.7811 3.7816 -0.6276 38 1 2.2767 6.0809 -0.4136 39 1 0.9405 6.5257 -1.5028 40 1 0.9762 8.8744 -0.5590 41 1 2.2153 8.2326 0.5460 42 1 2.5599 9.6775 -0.4348 43 1 1.1877 8.4979 -2.9498 44 1 2.6968 9.4396 -2.8759 45 1 2.6097 7.9454 -4.8817 46 1 3.9598 7.5366 -3.7947 47 1 3.9138 0.6717 -0.3652 48 1 3.4610 2.2818 2.0629 49 1 3.5462 0.5045 2.0146 50 1 5.4577 1.4422 3.6665 51 1 7.6744 1.4799 6.1616 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698593664.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:32 Heat of formation + Delta-G solvation = -138.994181 kcal Electronic energy + Delta-G solvation = -30606.686625 eV Core-core repulsion = 26346.845304 eV Total energy + Delta-G solvation = -4259.841321 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.42323 -40.26114 -39.77397 -38.40451 -36.73967 -35.95111 -35.12196 -33.63416 -33.14628 -32.61207 -30.06819 -29.27684 -27.73438 -26.26273 -25.37857 -25.10509 -24.24836 -21.95611 -21.76963 -21.21534 -21.01485 -19.88128 -18.59154 -18.01888 -17.61957 -17.10208 -16.89039 -16.79601 -16.39104 -16.28918 -16.27552 -15.99179 -15.75060 -15.66766 -15.24295 -15.03018 -14.81628 -14.60272 -14.36279 -14.09765 -13.84730 -13.57192 -13.42651 -13.31585 -13.29958 -12.95163 -12.90606 -12.79696 -12.58318 -12.51954 -12.43445 -12.38284 -12.11534 -12.06163 -11.80878 -11.57753 -11.47066 -10.89039 -10.76832 -10.30161 -10.04422 -9.97411 -9.50169 -9.30600 -8.44189 -5.91961 1.39406 1.43576 1.48187 1.55399 1.84176 2.10786 2.30746 2.69847 2.88317 3.05544 3.23996 3.54938 3.62619 3.74540 3.81633 3.88359 3.94988 3.99695 4.13991 4.22929 4.28859 4.36205 4.40164 4.47163 4.52162 4.53824 4.59231 4.61411 4.62507 4.64613 4.75400 4.76762 4.85748 4.88744 4.93802 5.00483 5.16750 5.23216 5.36644 5.44053 5.48045 5.78588 5.88834 5.91137 5.97800 6.12209 6.36597 6.54296 6.64112 7.16806 7.18307 7.61484 8.17250 8.73060 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.008432 B = 0.002754 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3319.927214 B =10165.391064 C =12447.258641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.147 4.147 3 C 0.083 3.917 4 H 0.102 0.898 5 C 0.136 3.864 6 N -0.697 5.697 7 C 0.519 3.481 8 O -0.572 6.572 9 C 0.079 3.921 10 H 0.096 0.904 11 C 0.038 3.962 12 N -0.552 5.552 13 C 0.024 3.976 14 C 0.017 3.983 15 C 0.055 3.945 16 O -0.387 6.387 17 N -0.674 5.674 18 C 0.066 3.934 19 C 0.439 3.561 20 O -0.622 6.622 21 N -0.574 5.574 22 C -0.331 4.331 23 H 0.077 0.923 24 C -0.011 4.011 25 N -0.920 5.920 26 Si 0.988 3.012 27 H -0.271 1.271 28 H -0.272 1.272 29 H -0.274 1.274 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.052 0.948 37 H 0.415 0.585 38 H 0.105 0.895 39 H 0.042 0.958 40 H 0.032 0.968 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.041 0.959 44 H 0.111 0.889 45 H 0.122 0.878 46 H 0.065 0.935 47 H 0.346 0.654 48 H 0.111 0.889 49 H 0.067 0.933 50 H 0.396 0.604 51 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.993 9.743 -7.803 20.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.187 4.187 3 C -0.027 4.027 4 H 0.120 0.880 5 C 0.012 3.988 6 N -0.349 5.349 7 C 0.304 3.696 8 O -0.452 6.452 9 C 0.017 3.983 10 H 0.113 0.887 11 C -0.091 4.091 12 N -0.277 5.277 13 C -0.123 4.123 14 C -0.111 4.111 15 C -0.021 4.021 16 O -0.305 6.305 17 N -0.305 5.305 18 C -0.066 4.066 19 C 0.226 3.774 20 O -0.509 6.509 21 N -0.212 5.212 22 C -0.460 4.460 23 H 0.095 0.905 24 C -0.211 4.211 25 N -0.561 5.561 26 Si 0.812 3.188 27 H -0.197 1.197 28 H -0.197 1.197 29 H -0.199 1.199 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.070 0.930 37 H 0.252 0.748 38 H 0.123 0.877 39 H 0.060 0.940 40 H 0.050 0.950 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.059 0.941 44 H 0.129 0.871 45 H 0.140 0.860 46 H 0.083 0.917 47 H 0.165 0.835 48 H 0.129 0.871 49 H 0.085 0.915 50 H 0.230 0.770 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.501 10.057 -9.057 20.578 hybrid contribution 0.181 -0.759 1.136 1.378 sum -15.319 9.297 -7.921 19.593 Atomic orbital electron populations 1.21756 0.94024 1.02429 1.02418 1.22157 0.97895 0.95948 1.02689 1.21921 0.87041 0.96270 0.97499 0.87990 1.21438 0.97862 0.81941 0.97553 1.45689 1.52786 1.15857 1.20590 1.20344 0.80335 0.86741 0.82208 1.90674 1.40772 1.75690 1.38018 1.21930 1.00448 0.90337 0.85572 0.88660 1.22592 0.97373 0.90063 0.99032 1.62224 1.59390 1.02007 1.04082 1.22460 0.98095 0.97869 0.93926 1.22881 0.99537 1.00011 0.88646 1.23021 0.98705 0.80438 0.99971 1.88079 1.79556 1.30561 1.32345 1.60111 1.08062 1.52155 1.10162 1.21582 0.90757 1.03253 0.91009 1.20939 0.91298 0.82028 0.83088 1.90516 1.67118 1.56346 1.36871 1.41924 1.06900 1.65088 1.07260 1.19625 0.83287 1.49481 0.93651 0.90481 1.25955 1.04494 0.96484 0.94183 1.69659 1.37664 1.50501 0.98299 0.84998 0.77389 0.78611 0.77791 1.19680 1.19712 1.19922 0.92112 0.91737 0.92359 0.91693 0.91307 0.90096 0.92974 0.74844 0.87668 0.94010 0.94959 0.90537 0.89695 0.94060 0.87115 0.85996 0.91665 0.83533 0.87114 0.91477 0.76980 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.62 71.98 0.69 -1.36 16 2 C -0.15 -2.47 5.38 30.59 0.16 -2.31 16 3 C 0.08 1.57 2.22 44.91 0.10 1.67 16 4 H 0.10 1.64 7.72 -2.39 -0.02 1.63 16 5 C 0.14 2.96 5.01 86.38 0.43 3.39 16 6 N -0.70 -16.42 5.35 -463.04 -2.48 -18.90 16 7 C 0.52 14.72 7.18 87.65 0.63 15.35 16 8 O -0.57 -20.85 16.51 15.91 0.26 -20.59 16 9 C 0.08 1.94 3.22 29.88 0.10 2.04 16 10 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 11 C 0.04 0.75 4.89 86.31 0.42 1.18 16 12 N -0.55 -9.88 4.99 -921.42 -4.59 -14.47 16 13 C 0.02 0.32 9.63 127.69 1.23 1.55 16 14 C 0.02 0.27 5.66 86.31 0.49 0.76 16 15 C 0.05 1.00 7.02 72.01 0.51 1.51 16 16 O -0.39 -10.48 10.01 -130.03 -1.30 -11.78 16 17 N -0.67 -17.86 5.28 -495.59 -2.61 -20.47 16 18 C 0.07 1.94 5.98 85.56 0.51 2.45 16 19 C 0.44 19.36 7.83 87.66 0.69 20.04 16 20 O -0.62 -32.77 15.84 -3.07 -0.05 -32.82 16 21 N -0.57 -27.94 5.29 -306.98 -1.62 -29.56 16 22 C -0.33 -18.24 9.68 84.04 0.81 -17.43 16 23 H 0.08 4.57 7.16 -2.91 -0.02 4.55 16 24 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 25 N -0.92 -48.35 13.05 21.66 0.28 -48.07 16 26 Si 0.99 42.16 29.55 68.60 2.03 44.19 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 28 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 29 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.82 6.83 -2.39 -0.02 0.80 16 33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.19 7.55 -2.39 -0.02 1.17 16 35 H 0.08 1.63 6.89 -2.38 -0.02 1.62 16 36 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.41 9.07 8.00 -92.71 -0.74 8.33 16 38 H 0.11 1.78 7.97 -2.39 -0.02 1.76 16 39 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.03 0.41 8.14 -2.38 -0.02 0.39 16 41 H 0.08 0.99 8.08 -2.39 -0.02 0.97 16 42 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.12 1.68 8.14 -2.38 -0.02 1.66 16 46 H 0.07 1.15 8.14 -2.38 -0.02 1.14 16 47 H 0.35 10.24 8.25 -89.69 -0.74 9.50 16 48 H 0.11 2.74 7.99 -2.38 -0.02 2.72 16 49 H 0.07 1.72 7.57 -2.39 -0.02 1.70 16 50 H 0.40 18.23 7.90 -92.71 -0.73 17.49 16 51 H 0.28 13.66 8.31 -92.70 -0.77 12.89 16 Total: -1.00 -73.38 413.91 -4.11 -77.49 By element: Atomic # 1 Polarization: 47.53 SS G_CDS: -1.26 Total: 46.26 kcal Atomic # 6 Polarization: 21.48 SS G_CDS: 7.24 Total: 28.72 kcal Atomic # 7 Polarization: -120.45 SS G_CDS: -11.03 Total: -131.47 kcal Atomic # 8 Polarization: -64.10 SS G_CDS: -1.09 Total: -65.19 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -73.38 -4.11 -77.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698593664.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.503 kcal (2) G-P(sol) polarization free energy of solvation -73.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds