Wall clock time and date at job start Wed Apr 1 2020 02:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47241 * 2 1 4 4 H 1.08994 * 109.46886 * 54.60613 * 3 2 1 5 5 C 1.52995 * 109.47130 * 174.60903 * 3 2 1 6 6 N 1.46506 * 109.46834 * 174.99845 * 5 3 2 7 7 C 1.34775 * 119.99821 * 179.97438 * 6 5 3 8 8 O 1.21279 * 120.00210 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99954 * 179.97438 * 7 6 5 10 10 H 1.08997 * 109.50356 * 55.08740 * 9 7 6 11 11 C 1.53098 * 109.50624 * 295.00223 * 9 7 6 12 12 N 1.47018 * 109.25613 * 183.21332 * 11 9 7 13 13 C 1.46899 * 110.99882 * 182.39307 * 12 11 9 14 14 C 1.47010 * 110.75163 * 58.61865 * 12 11 9 15 15 C 1.53096 * 109.25843 * 301.38259 * 14 12 11 16 16 O 1.43016 * 109.50547 * 175.22136 * 9 7 6 17 17 N 1.46904 * 109.46515 * 294.60907 * 3 2 1 18 18 C 1.46898 * 111.00005 * 300.91809 * 17 3 2 19 19 C 1.50704 * 109.47322 * 185.68035 * 18 17 3 20 20 O 1.21295 * 119.99335 * 0.02562 * 19 18 17 21 21 N 1.34771 * 119.99985 * 180.02562 * 19 18 17 22 22 C 1.37101 * 119.99528 * 180.02562 * 21 19 18 23 23 H 1.07996 * 120.00159 * 359.97438 * 22 21 19 24 24 C 1.38952 * 119.99769 * 179.97438 * 22 21 19 25 25 N 1.31412 * 120.00262 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00005 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46773 * 89.99990 * 26 24 22 28 28 H 1.48495 * 109.47043 * 209.99697 * 26 24 22 29 29 H 1.48499 * 109.47333 * 330.00300 * 26 24 22 30 30 H 1.08997 * 109.47227 * 58.86001 * 1 2 3 31 31 H 1.09001 * 109.47071 * 178.86795 * 1 2 3 32 32 H 1.09001 * 109.47230 * 298.86251 * 1 2 3 33 33 H 1.08999 * 109.47468 * 239.99684 * 2 1 3 34 34 H 1.09002 * 109.47248 * 119.99843 * 2 1 3 35 35 H 1.08998 * 109.46892 * 294.99641 * 5 3 2 36 36 H 1.08996 * 109.47677 * 55.00055 * 5 3 2 37 37 H 0.96995 * 119.99880 * 359.97438 * 6 5 3 38 38 H 1.08993 * 109.51059 * 303.15050 * 11 9 7 39 39 H 1.09004 * 109.50562 * 63.23756 * 11 9 7 40 40 H 1.08999 * 109.47134 * 59.99848 * 13 12 11 41 41 H 1.08995 * 109.47156 * 180.02562 * 13 12 11 42 42 H 1.08999 * 109.46962 * 300.00152 * 13 12 11 43 43 H 1.09005 * 109.50879 * 61.31203 * 14 12 11 44 44 H 1.08998 * 109.50666 * 181.40502 * 14 12 11 45 45 H 1.09005 * 109.51130 * 176.78153 * 15 14 12 46 46 H 1.08994 * 109.50596 * 296.87274 * 15 14 12 47 47 H 1.00895 * 110.99984 * 64.87603 * 17 3 2 48 48 H 1.09002 * 109.46957 * 65.67870 * 18 17 3 49 49 H 1.09004 * 109.47254 * 305.67948 * 18 17 3 50 50 H 0.96994 * 120.00423 * 359.97438 * 21 19 18 51 51 H 0.96991 * 120.00518 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6000 1.9835 0.8377 5 6 3.5639 1.4446 0.1355 6 7 4.0629 2.8169 0.0158 7 6 5.3850 3.0634 0.1046 8 8 6.1616 2.1491 0.2832 9 6 5.8983 4.4749 -0.0191 10 1 5.3972 5.1097 0.7116 11 6 5.6174 4.9991 -1.4298 12 7 6.1882 6.3469 -1.5688 13 6 5.8912 6.9104 -2.8925 14 6 7.6365 6.3276 -1.3173 15 6 7.8972 5.7900 0.0922 16 8 7.3085 4.4927 0.2186 17 7 1.6594 2.0964 -1.2593 18 6 2.2178 1.3803 -2.4140 19 6 1.9258 2.1537 -3.6740 20 8 1.3131 3.1989 -3.6156 21 7 2.3453 1.6840 -4.8655 22 6 2.0801 2.3880 -6.0117 23 1 1.5346 3.3186 -5.9598 24 6 2.5131 1.9041 -7.2401 25 7 3.1773 0.7719 -7.3032 26 14 2.1510 2.8628 -8.8019 27 1 3.2594 3.8151 -9.0662 28 1 2.0250 1.9209 -9.9429 29 1 0.8810 3.6147 -8.6380 30 1 -0.3633 0.5314 -0.8796 31 1 -0.3633 -1.0275 -0.0203 32 1 -0.3634 0.4961 0.9000 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.8427 1.0403 1.1086 36 1 3.9997 0.8297 -0.6519 37 1 3.4418 3.5480 -0.1274 38 1 6.0730 4.3336 -2.1630 39 1 4.5408 5.0403 -1.5952 40 1 4.8113 6.9726 -3.0269 41 1 6.3253 7.9073 -2.9686 42 1 6.3170 6.2692 -3.6642 43 1 8.1245 5.6831 -2.0486 44 1 8.0340 7.3391 -1.4010 45 1 8.9716 5.7201 0.2623 46 1 7.4555 6.4639 0.8262 47 1 0.6567 2.1787 -1.3352 48 1 1.7651 0.3911 -2.4816 49 1 3.2962 1.2787 -2.2917 50 1 2.8356 0.8484 -4.9121 51 1 3.4799 0.4343 -8.1607 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698593666.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:39 Heat of formation + Delta-G solvation = -107.443928 kcal Electronic energy + Delta-G solvation = -31545.724089 eV Core-core repulsion = 27287.250891 eV Total energy + Delta-G solvation = -4258.473199 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.39866 -39.15681 -38.36634 -37.25059 -35.78127 -34.14316 -33.89282 -31.82066 -31.73779 -31.18913 -29.24302 -28.33774 -26.63795 -25.15899 -24.26889 -24.21123 -23.16435 -20.91794 -20.52610 -20.03800 -19.13818 -17.95702 -17.42159 -16.87309 -16.78707 -16.12787 -15.65829 -15.54717 -15.36013 -15.07068 -14.96802 -14.75358 -14.39253 -14.18758 -14.17094 -13.93121 -13.77738 -13.52122 -13.29435 -13.04095 -12.58402 -12.42651 -12.34646 -12.09699 -11.93080 -11.84513 -11.79208 -11.53958 -11.52447 -11.37903 -11.10434 -10.92668 -10.88006 -10.80406 -10.42368 -10.24366 -9.86969 -9.65734 -9.53052 -8.98505 -8.60253 -8.53873 -8.11018 -7.98440 -6.43868 -3.84989 2.61609 2.81990 3.15006 3.24034 3.29288 3.62658 3.88362 3.93115 4.08950 4.31731 4.59605 4.62704 4.70860 4.75159 4.87025 4.90724 4.96391 5.01229 5.12085 5.14095 5.22556 5.26519 5.34455 5.40520 5.43580 5.45540 5.55038 5.56102 5.58830 5.66788 5.73356 5.76874 5.79365 5.85943 5.86907 5.95926 6.06155 6.17677 6.24338 6.46138 6.69494 6.74156 6.89371 7.10994 7.52401 7.53966 7.60481 8.03567 8.28164 8.58668 9.15457 9.52250 10.03358 10.73782 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.007101 B = 0.003998 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3942.043578 B = 7002.146112 C =10019.648741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.161 4.161 3 C 0.074 3.926 4 H 0.091 0.909 5 C 0.128 3.872 6 N -0.710 5.710 7 C 0.520 3.480 8 O -0.526 6.526 9 C 0.081 3.919 10 H 0.091 0.909 11 C 0.027 3.973 12 N -0.539 5.539 13 C 0.023 3.977 14 C 0.012 3.988 15 C 0.064 3.936 16 O -0.358 6.358 17 N -0.658 5.658 18 C 0.043 3.957 19 C 0.442 3.558 20 O -0.583 6.583 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.901 5.901 26 Si 0.928 3.072 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.269 1.269 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.412 0.588 38 H 0.052 0.948 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.031 0.969 43 H 0.046 0.954 44 H 0.088 0.912 45 H 0.102 0.898 46 H 0.061 0.939 47 H 0.353 0.647 48 H 0.048 0.952 49 H 0.086 0.914 50 H 0.391 0.609 51 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.261 5.230 15.866 17.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C -0.037 4.037 4 H 0.109 0.891 5 C 0.004 3.996 6 N -0.363 5.363 7 C 0.304 3.696 8 O -0.402 6.402 9 C 0.019 3.981 10 H 0.109 0.891 11 C -0.101 4.101 12 N -0.264 5.264 13 C -0.125 4.125 14 C -0.117 4.117 15 C -0.013 4.013 16 O -0.275 6.275 17 N -0.291 5.291 18 C -0.090 4.090 19 C 0.227 3.773 20 O -0.467 6.467 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.542 5.542 26 Si 0.755 3.245 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.248 0.752 38 H 0.070 0.930 39 H 0.118 0.882 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.050 0.950 43 H 0.064 0.936 44 H 0.106 0.894 45 H 0.120 0.880 46 H 0.079 0.921 47 H 0.173 0.827 48 H 0.066 0.934 49 H 0.104 0.896 50 H 0.224 0.776 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.883 5.772 16.270 17.695 hybrid contribution -0.411 -0.882 -1.825 2.068 sum 3.472 4.889 14.445 15.640 Atomic orbital electron populations 1.21752 0.95242 1.01986 1.02014 1.22212 0.96777 0.97932 1.03117 1.21925 0.94206 0.93625 0.93978 0.89123 1.21419 0.92925 0.83397 1.01881 1.45695 1.06791 1.10443 1.73404 1.20019 0.82573 0.89954 0.77071 1.90714 1.55950 1.45774 1.47739 1.21906 0.84302 0.94377 0.97509 0.89115 1.22706 1.02183 0.89611 0.95616 1.62246 1.12008 1.21258 1.30857 1.22411 1.02781 0.99378 0.87915 1.22864 0.88893 1.01918 0.97983 1.22728 0.98836 0.84412 0.95344 1.88107 1.19238 1.29156 1.91029 1.60206 1.18097 1.51220 0.99575 1.21772 1.00933 0.95491 0.90776 1.19790 0.85311 0.87870 0.84294 1.90516 1.44983 1.24775 1.86458 1.41870 1.49896 1.23093 1.05175 1.19674 1.33831 1.05990 0.83413 0.87968 1.25254 0.96752 0.96424 0.99443 1.69608 1.37879 1.19848 1.26854 0.85885 0.79002 0.78968 0.80600 1.20439 1.20921 1.19410 0.92443 0.92506 0.92548 0.91024 0.91283 0.91158 0.91290 0.75214 0.92994 0.88188 0.90416 0.91148 0.94996 0.93611 0.89417 0.87980 0.92089 0.82682 0.93450 0.89564 0.77553 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.71 37.16 0.36 -1.03 16 2 C -0.16 -1.53 5.17 -26.73 -0.14 -1.67 16 3 C 0.07 0.76 2.70 -67.71 -0.18 0.58 16 4 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 5 C 0.13 1.51 4.70 -4.04 -0.02 1.49 16 6 N -0.71 -8.85 5.35 -60.29 -0.32 -9.17 16 7 C 0.52 7.72 7.18 -10.98 -0.08 7.64 16 8 O -0.53 -9.88 16.51 -14.27 -0.24 -10.12 16 9 C 0.08 1.05 3.22 -27.83 -0.09 0.96 16 10 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 11 C 0.03 0.37 4.90 -3.71 -0.02 0.35 16 12 N -0.54 -6.41 4.99 -242.60 -1.21 -7.62 16 13 C 0.02 0.26 9.60 60.06 0.58 0.84 16 14 C 0.01 0.12 5.66 -3.71 -0.02 0.10 16 15 C 0.06 0.65 7.01 37.21 0.26 0.91 16 16 O -0.36 -5.09 10.01 -55.06 -0.55 -5.65 16 17 N -0.66 -8.96 5.35 -107.99 -0.58 -9.54 16 18 C 0.04 0.70 5.34 -4.98 -0.03 0.67 16 19 C 0.44 9.92 7.83 -10.99 -0.09 9.84 16 20 O -0.58 -14.89 15.90 5.54 0.09 -14.80 16 21 N -0.56 -13.97 5.29 -10.96 -0.06 -14.02 16 22 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 23 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 24 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 25 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16 26 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 29 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 30 H 0.06 0.60 6.85 -51.93 -0.36 0.24 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.77 6.23 -51.93 -0.32 0.44 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.94 6.57 -51.93 -0.34 0.59 16 37 H 0.41 4.74 8.00 -40.82 -0.33 4.41 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.10 1.33 8.01 -51.93 -0.42 0.91 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.35 4.95 7.23 -39.29 -0.28 4.67 16 48 H 0.05 0.72 6.49 -51.93 -0.34 0.38 16 49 H 0.09 1.42 6.15 -51.93 -0.32 1.10 16 50 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 51 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 408.41 15.07 6.15 6.15 Total: -1.00 -33.16 408.41 -9.17 -42.33 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: -8.45 Total: 17.45 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: 0.30 Total: 12.86 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: -1.44 Total: -64.04 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -0.70 Total: -30.56 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.16 -9.17 -42.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698593666.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.117 kcal (2) G-P(sol) polarization free energy of solvation -33.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds