Wall clock time and date at job start Wed Apr 1 2020 02:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47241 * 2 1 4 4 H 1.08994 * 109.46886 * 54.60613 * 3 2 1 5 5 C 1.52995 * 109.47130 * 174.60903 * 3 2 1 6 6 N 1.46506 * 109.46834 * 174.99845 * 5 3 2 7 7 C 1.34775 * 119.99821 * 179.97438 * 6 5 3 8 8 O 1.21279 * 120.00210 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99954 * 179.97438 * 7 6 5 10 10 H 1.08997 * 109.50356 * 55.08740 * 9 7 6 11 11 C 1.53098 * 109.50624 * 295.00223 * 9 7 6 12 12 N 1.47018 * 109.25613 * 183.21332 * 11 9 7 13 13 C 1.46899 * 110.99882 * 182.39307 * 12 11 9 14 14 C 1.47010 * 110.75163 * 58.61865 * 12 11 9 15 15 C 1.53096 * 109.25843 * 301.38259 * 14 12 11 16 16 O 1.43016 * 109.50547 * 175.22136 * 9 7 6 17 17 N 1.46904 * 109.46515 * 294.60907 * 3 2 1 18 18 C 1.46898 * 111.00005 * 300.91809 * 17 3 2 19 19 C 1.50704 * 109.47322 * 185.68035 * 18 17 3 20 20 O 1.21295 * 119.99335 * 0.02562 * 19 18 17 21 21 N 1.34771 * 119.99985 * 180.02562 * 19 18 17 22 22 C 1.37101 * 119.99528 * 180.02562 * 21 19 18 23 23 H 1.07996 * 120.00159 * 359.97438 * 22 21 19 24 24 C 1.38952 * 119.99769 * 179.97438 * 22 21 19 25 25 N 1.31412 * 120.00262 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00005 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46773 * 89.99990 * 26 24 22 28 28 H 1.48495 * 109.47043 * 209.99697 * 26 24 22 29 29 H 1.48499 * 109.47333 * 330.00300 * 26 24 22 30 30 H 1.08997 * 109.47227 * 58.86001 * 1 2 3 31 31 H 1.09001 * 109.47071 * 178.86795 * 1 2 3 32 32 H 1.09001 * 109.47230 * 298.86251 * 1 2 3 33 33 H 1.08999 * 109.47468 * 239.99684 * 2 1 3 34 34 H 1.09002 * 109.47248 * 119.99843 * 2 1 3 35 35 H 1.08998 * 109.46892 * 294.99641 * 5 3 2 36 36 H 1.08996 * 109.47677 * 55.00055 * 5 3 2 37 37 H 0.96995 * 119.99880 * 359.97438 * 6 5 3 38 38 H 1.08993 * 109.51059 * 303.15050 * 11 9 7 39 39 H 1.09004 * 109.50562 * 63.23756 * 11 9 7 40 40 H 1.08999 * 109.47134 * 59.99848 * 13 12 11 41 41 H 1.08995 * 109.47156 * 180.02562 * 13 12 11 42 42 H 1.08999 * 109.46962 * 300.00152 * 13 12 11 43 43 H 1.09005 * 109.50879 * 61.31203 * 14 12 11 44 44 H 1.08998 * 109.50666 * 181.40502 * 14 12 11 45 45 H 1.09005 * 109.51130 * 176.78153 * 15 14 12 46 46 H 1.08994 * 109.50596 * 296.87274 * 15 14 12 47 47 H 1.00895 * 110.99984 * 64.87603 * 17 3 2 48 48 H 1.09002 * 109.46957 * 65.67870 * 18 17 3 49 49 H 1.09004 * 109.47254 * 305.67948 * 18 17 3 50 50 H 0.96994 * 120.00423 * 359.97438 * 21 19 18 51 51 H 0.96991 * 120.00518 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6000 1.9835 0.8377 5 6 3.5639 1.4446 0.1355 6 7 4.0629 2.8169 0.0158 7 6 5.3850 3.0634 0.1046 8 8 6.1616 2.1491 0.2832 9 6 5.8983 4.4749 -0.0191 10 1 5.3972 5.1097 0.7116 11 6 5.6174 4.9991 -1.4298 12 7 6.1882 6.3469 -1.5688 13 6 5.8912 6.9104 -2.8925 14 6 7.6365 6.3276 -1.3173 15 6 7.8972 5.7900 0.0922 16 8 7.3085 4.4927 0.2186 17 7 1.6594 2.0964 -1.2593 18 6 2.2178 1.3803 -2.4140 19 6 1.9258 2.1537 -3.6740 20 8 1.3131 3.1989 -3.6156 21 7 2.3453 1.6840 -4.8655 22 6 2.0801 2.3880 -6.0117 23 1 1.5346 3.3186 -5.9598 24 6 2.5131 1.9041 -7.2401 25 7 3.1773 0.7719 -7.3032 26 14 2.1510 2.8628 -8.8019 27 1 3.2594 3.8151 -9.0662 28 1 2.0250 1.9209 -9.9429 29 1 0.8810 3.6147 -8.6380 30 1 -0.3633 0.5314 -0.8796 31 1 -0.3633 -1.0275 -0.0203 32 1 -0.3634 0.4961 0.9000 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.8427 1.0403 1.1086 36 1 3.9997 0.8297 -0.6519 37 1 3.4418 3.5480 -0.1274 38 1 6.0730 4.3336 -2.1630 39 1 4.5408 5.0403 -1.5952 40 1 4.8113 6.9726 -3.0269 41 1 6.3253 7.9073 -2.9686 42 1 6.3170 6.2692 -3.6642 43 1 8.1245 5.6831 -2.0486 44 1 8.0340 7.3391 -1.4010 45 1 8.9716 5.7201 0.2623 46 1 7.4555 6.4639 0.8262 47 1 0.6567 2.1787 -1.3352 48 1 1.7651 0.3911 -2.4816 49 1 3.2962 1.2787 -2.2917 50 1 2.8356 0.8484 -4.9121 51 1 3.4799 0.4343 -8.1607 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698593666.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:38 Heat of formation + Delta-G solvation = -134.965416 kcal Electronic energy + Delta-G solvation = -31546.917511 eV Core-core repulsion = 27287.250891 eV Total energy + Delta-G solvation = -4259.666620 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.47264 -40.42596 -39.76586 -38.57231 -36.76322 -35.95100 -35.19800 -33.30776 -32.78387 -32.69898 -30.19491 -29.38572 -28.11166 -26.32539 -25.85740 -25.14695 -24.03186 -21.93366 -21.72901 -21.23242 -20.56694 -19.87319 -18.48729 -18.31288 -17.84922 -17.22223 -16.96115 -16.66248 -16.49632 -16.40059 -16.07343 -15.92426 -15.89327 -15.64278 -15.28740 -15.20183 -14.87893 -14.76576 -14.38442 -14.12179 -14.02714 -13.54902 -13.53234 -13.38411 -13.16721 -12.99413 -12.91113 -12.84863 -12.71193 -12.47522 -12.41722 -12.29565 -12.13893 -11.84370 -11.78982 -11.66656 -11.49432 -10.88411 -10.79292 -10.33132 -10.08000 -10.00993 -9.59973 -9.33501 -8.46698 -5.95308 1.36460 1.40133 1.45393 1.52793 1.81605 2.06498 2.27722 2.66373 2.89239 3.06311 3.20898 3.52949 3.62323 3.70372 3.75219 3.86262 3.94215 4.02930 4.11143 4.17554 4.27075 4.28436 4.36123 4.43336 4.47391 4.49916 4.52802 4.56148 4.58206 4.62757 4.75809 4.76472 4.80832 4.88317 4.94301 4.94876 5.13230 5.26582 5.39201 5.39890 5.40700 5.70638 5.82394 5.87644 5.97427 6.08438 6.41791 6.53208 6.59576 7.12773 7.16974 7.57090 8.11599 8.70853 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.007101 B = 0.003998 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3942.043578 B = 7002.146112 C =10019.648741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.157 4.157 3 C 0.084 3.916 4 H 0.116 0.884 5 C 0.125 3.875 6 N -0.698 5.698 7 C 0.516 3.484 8 O -0.572 6.572 9 C 0.087 3.913 10 H 0.117 0.883 11 C 0.035 3.965 12 N -0.536 5.536 13 C 0.023 3.977 14 C 0.010 3.990 15 C 0.060 3.940 16 O -0.387 6.387 17 N -0.663 5.663 18 C 0.062 3.938 19 C 0.442 3.558 20 O -0.614 6.614 21 N -0.577 5.577 22 C -0.329 4.329 23 H 0.082 0.918 24 C -0.014 4.014 25 N -0.924 5.924 26 Si 0.990 3.010 27 H -0.273 1.273 28 H -0.273 1.273 29 H -0.269 1.269 30 H 0.041 0.959 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.050 0.950 37 H 0.418 0.582 38 H 0.019 0.981 39 H 0.096 0.904 40 H 0.070 0.930 41 H 0.095 0.905 42 H 0.015 0.985 43 H 0.029 0.971 44 H 0.116 0.884 45 H 0.122 0.878 46 H 0.079 0.921 47 H 0.353 0.647 48 H 0.065 0.935 49 H 0.088 0.912 50 H 0.392 0.608 51 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.965 6.117 17.144 18.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.196 4.196 3 C -0.026 4.026 4 H 0.134 0.866 5 C 0.001 3.999 6 N -0.351 5.351 7 C 0.301 3.699 8 O -0.451 6.451 9 C 0.025 3.975 10 H 0.135 0.865 11 C -0.095 4.095 12 N -0.261 5.261 13 C -0.125 4.125 14 C -0.117 4.117 15 C -0.017 4.017 16 O -0.305 6.305 17 N -0.296 5.296 18 C -0.070 4.070 19 C 0.230 3.770 20 O -0.500 6.500 21 N -0.215 5.215 22 C -0.459 4.459 23 H 0.100 0.900 24 C -0.214 4.214 25 N -0.565 5.565 26 Si 0.814 3.186 27 H -0.198 1.198 28 H -0.198 1.198 29 H -0.194 1.194 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.255 0.745 38 H 0.037 0.963 39 H 0.115 0.885 40 H 0.088 0.912 41 H 0.114 0.886 42 H 0.034 0.966 43 H 0.047 0.953 44 H 0.135 0.865 45 H 0.140 0.860 46 H 0.097 0.903 47 H 0.174 0.826 48 H 0.083 0.917 49 H 0.106 0.894 50 H 0.226 0.774 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.563 6.663 17.567 19.123 hybrid contribution -0.323 -1.131 -2.146 2.447 sum 3.240 5.533 15.421 16.700 Atomic orbital electron populations 1.21739 0.94701 1.02313 1.02030 1.22174 0.97113 0.96933 1.03416 1.21968 0.93152 0.94590 0.92840 0.86571 1.21519 0.93720 0.82720 1.01904 1.45684 1.06257 1.11054 1.72070 1.20422 0.82849 0.90356 0.76272 1.90684 1.57084 1.47156 1.50128 1.21897 0.84417 0.93480 0.97657 0.86534 1.22580 1.01736 0.89980 0.95161 1.62313 1.13055 1.19850 1.30882 1.22450 1.02437 1.00321 0.87284 1.22982 0.87729 1.03256 0.97782 1.23001 0.99997 0.83177 0.95476 1.88076 1.19676 1.31623 1.91158 1.60164 1.18053 1.51603 0.99750 1.21514 1.01281 0.95360 0.88879 1.20811 0.83359 0.87520 0.85351 1.90486 1.45960 1.26320 1.87197 1.41968 1.50718 1.23221 1.05547 1.19659 1.35049 1.06086 0.85065 0.90041 1.26028 0.96177 0.97240 1.01930 1.69681 1.38253 1.20775 1.27772 0.84961 0.78765 0.77854 0.77000 1.19836 1.19769 1.19399 0.93968 0.92019 0.91033 0.92358 0.89409 0.89865 0.93183 0.74477 0.96280 0.88529 0.91150 0.88597 0.96596 0.95300 0.86544 0.85981 0.90290 0.82619 0.91699 0.89403 0.77442 0.91466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.71 71.98 0.70 -1.71 16 2 C -0.16 -2.64 5.17 30.60 0.16 -2.48 16 3 C 0.08 1.58 2.70 44.92 0.12 1.70 16 4 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 5 C 0.13 2.82 4.70 86.38 0.41 3.22 16 6 N -0.70 -16.93 5.35 -463.06 -2.48 -19.41 16 7 C 0.52 15.34 7.18 87.66 0.63 15.97 16 8 O -0.57 -21.86 16.51 15.94 0.26 -21.60 16 9 C 0.09 2.23 3.22 29.88 0.10 2.33 16 10 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 11 C 0.03 0.93 4.90 86.31 0.42 1.36 16 12 N -0.54 -12.33 4.99 -921.45 -4.59 -16.92 16 13 C 0.02 0.51 9.60 127.69 1.23 1.74 16 14 C 0.01 0.20 5.66 86.31 0.49 0.69 16 15 C 0.06 1.12 7.01 72.01 0.50 1.62 16 16 O -0.39 -10.84 10.01 -130.02 -1.30 -12.14 16 17 N -0.66 -17.32 5.35 -495.56 -2.65 -19.97 16 18 C 0.06 2.02 5.34 85.56 0.46 2.48 16 19 C 0.44 20.22 7.83 87.66 0.69 20.90 16 20 O -0.61 -31.92 15.90 -3.08 -0.05 -31.97 16 21 N -0.58 -29.39 5.29 -306.98 -1.62 -31.01 16 22 C -0.33 -18.48 9.68 84.04 0.81 -17.67 16 23 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 24 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 25 N -0.92 -50.45 13.05 21.66 0.28 -50.16 16 26 Si 0.99 42.84 29.55 68.60 2.03 44.87 16 27 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 28 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 29 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 30 H 0.04 0.81 6.85 -2.39 -0.02 0.79 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 33 H 0.06 1.15 6.23 -2.39 -0.01 1.14 16 34 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.05 1.34 6.57 -2.39 -0.02 1.33 16 37 H 0.42 9.16 8.00 -92.71 -0.74 8.41 16 38 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.10 2.61 8.01 -2.39 -0.02 2.59 16 40 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 41 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.02 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.03 0.66 8.14 -2.38 -0.02 0.64 16 44 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.12 1.76 8.14 -2.38 -0.02 1.74 16 46 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.35 9.49 7.23 -89.70 -0.65 8.84 16 48 H 0.07 1.92 6.49 -2.39 -0.02 1.91 16 49 H 0.09 2.90 6.15 -2.39 -0.01 2.88 16 50 H 0.39 19.49 7.90 -92.71 -0.73 18.76 16 51 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -73.55 408.41 -4.11 -77.66 By element: Atomic # 1 Polarization: 51.95 SS G_CDS: -1.16 Total: 50.79 kcal Atomic # 6 Polarization: 22.69 SS G_CDS: 7.18 Total: 29.86 kcal Atomic # 7 Polarization: -126.41 SS G_CDS: -11.07 Total: -137.48 kcal Atomic # 8 Polarization: -64.62 SS G_CDS: -1.09 Total: -65.70 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -73.55 -4.11 -77.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698593666.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.309 kcal (2) G-P(sol) polarization free energy of solvation -73.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds