Wall clock time and date at job start Wed Apr 1 2020 02:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47492 * 2 1 4 4 H 1.09002 * 109.47054 * 305.23614 * 3 2 1 5 5 C 1.52994 * 109.47526 * 185.23291 * 3 2 1 6 6 N 1.46505 * 109.47158 * 184.99998 * 5 3 2 7 7 C 1.34773 * 120.00109 * 179.97438 * 6 5 3 8 8 O 1.21288 * 119.99994 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.00308 * 179.97438 * 7 6 5 10 10 H 1.08995 * 109.50668 * 305.08848 * 9 7 6 11 11 C 1.53101 * 109.50155 * 65.21980 * 9 7 6 12 12 N 1.47021 * 109.25546 * 176.78578 * 11 9 7 13 13 C 1.46904 * 110.99867 * 177.60668 * 12 11 9 14 14 C 1.47010 * 110.75183 * 301.37995 * 12 11 9 15 15 C 1.53101 * 109.25909 * 58.61655 * 14 12 11 16 16 O 1.43013 * 109.25913 * 303.15481 * 15 14 12 17 17 N 1.46900 * 109.47041 * 65.23037 * 3 2 1 18 18 C 1.46898 * 110.99980 * 58.35800 * 17 3 2 19 19 C 1.50701 * 109.47252 * 174.49153 * 18 17 3 20 20 O 1.21288 * 119.99915 * 359.97438 * 19 18 17 21 21 N 1.34779 * 120.00100 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.99953 * 179.97438 * 21 19 18 23 23 H 1.07996 * 120.00326 * 0.02562 * 22 21 19 24 24 C 1.38947 * 119.99593 * 180.02562 * 22 21 19 25 25 N 1.31406 * 120.00318 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99697 * 179.72477 * 24 22 21 27 27 H 1.48498 * 109.47119 * 180.27277 * 26 24 22 28 28 H 1.48493 * 109.47310 * 300.27949 * 26 24 22 29 29 H 1.48510 * 109.47030 * 60.27908 * 26 24 22 30 30 H 1.08996 * 109.47463 * 54.88569 * 1 2 3 31 31 H 1.09001 * 109.47284 * 174.88762 * 1 2 3 32 32 H 1.09006 * 109.46939 * 294.88994 * 1 2 3 33 33 H 1.09001 * 109.47349 * 240.00008 * 2 1 3 34 34 H 1.09007 * 109.47432 * 120.00053 * 2 1 3 35 35 H 1.08997 * 109.47471 * 304.99921 * 5 3 2 36 36 H 1.09001 * 109.47435 * 64.99921 * 5 3 2 37 37 H 0.96996 * 119.99617 * 359.97438 * 6 5 3 38 38 H 1.09001 * 109.50550 * 296.71323 * 11 9 7 39 39 H 1.08998 * 109.51207 * 56.85104 * 11 9 7 40 40 H 1.09000 * 109.46529 * 187.59041 * 13 12 11 41 41 H 1.09004 * 109.46721 * 307.58385 * 13 12 11 42 42 H 1.08998 * 109.47291 * 67.58797 * 13 12 11 43 43 H 1.09005 * 109.50879 * 298.68637 * 14 12 11 44 44 H 1.08995 * 109.54247 * 178.57199 * 14 12 11 45 45 H 1.08990 * 109.50957 * 183.21547 * 15 14 12 46 46 H 1.09004 * 109.50257 * 63.08287 * 15 14 12 47 47 H 1.00908 * 111.00188 * 294.40465 * 17 3 2 48 48 H 1.08994 * 109.47165 * 54.49134 * 18 17 3 49 49 H 1.09004 * 109.46894 * 294.48818 * 18 17 3 50 50 H 0.97003 * 119.99741 * 0.02562 * 21 19 18 51 51 H 0.97001 * 120.00195 * 359.72068 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6022 1.9827 -0.8394 5 6 3.5643 1.4445 -0.1316 6 7 4.0630 2.8168 -0.0118 7 6 5.3853 3.0631 -0.0964 8 8 6.1626 2.1485 -0.2712 9 6 5.8983 4.4748 0.0262 10 1 5.3976 5.1088 -0.7055 11 6 5.6173 5.0000 1.4365 12 7 6.1877 6.3480 1.5745 13 6 5.8905 6.9125 2.8978 14 6 7.6360 6.3290 1.3230 15 6 7.8969 5.7903 -0.0861 16 8 7.3084 4.4929 -0.2116 17 7 1.6562 2.0976 1.2576 18 6 2.1973 1.3729 2.4152 19 6 1.8996 2.1445 3.6749 20 8 1.2965 3.1951 3.6143 21 7 2.3035 1.6673 4.8689 22 6 2.0331 2.3696 6.0149 23 1 1.4961 3.3050 5.9610 24 6 2.4500 1.8778 7.2457 25 7 3.1039 0.7398 7.3113 26 14 2.0884 2.8385 8.8064 27 1 2.6399 2.1084 9.9761 28 1 2.7179 4.1805 8.7187 29 1 0.6196 2.9901 8.9652 30 1 -0.3634 0.5911 -0.8406 31 1 -0.3634 -1.0236 -0.0916 32 1 -0.3633 0.4325 0.9323 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.9980 0.8302 0.6575 36 1 3.8457 1.0392 -1.1035 37 1 3.4414 3.5482 0.1283 38 1 4.5406 5.0419 1.6015 39 1 6.0731 4.3351 2.1702 40 1 6.2047 7.9559 2.9265 41 1 4.8188 6.8504 3.0869 42 1 6.4275 6.3502 3.6616 43 1 8.1241 5.6852 2.0548 44 1 8.0337 7.3404 1.4054 45 1 8.9712 5.7207 -0.2561 46 1 7.4543 6.4632 -0.8207 47 1 0.6537 2.1907 1.3256 48 1 3.2758 1.2625 2.3030 49 1 1.7354 0.3873 2.4751 50 1 2.7862 0.8273 4.9173 51 1 3.2920 0.2411 6.5009 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698593667.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:40 Heat of formation + Delta-G solvation = -135.368129 kcal Electronic energy + Delta-G solvation = -31578.293169 eV Core-core repulsion = 27318.609086 eV Total energy + Delta-G solvation = -4259.684083 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.50975 -40.54867 -39.84167 -38.66560 -36.79323 -36.33954 -35.24910 -33.25085 -32.77161 -32.72955 -30.22722 -29.41302 -28.02549 -26.28214 -25.83569 -25.17576 -24.07577 -22.08594 -21.89460 -21.33784 -20.66893 -19.93616 -18.73330 -18.51396 -17.88590 -17.23973 -16.93751 -16.82340 -16.65319 -16.37881 -16.21371 -16.05264 -15.79837 -15.55602 -15.35703 -15.27660 -14.92907 -14.83068 -14.45493 -14.25334 -14.16197 -13.60073 -13.40404 -13.34809 -13.24472 -13.02285 -12.90036 -12.81958 -12.72874 -12.50091 -12.34780 -11.94410 -11.92079 -11.89508 -11.82787 -11.71764 -11.51041 -10.91860 -10.82151 -10.40489 -10.12609 -10.10818 -9.62614 -9.40771 -8.92580 -6.06509 1.41461 1.51512 1.52722 1.77637 1.80500 2.01183 2.39471 2.63527 2.78725 3.00658 3.16842 3.41194 3.58937 3.65435 3.69735 3.83217 3.91024 3.95405 4.07666 4.11326 4.12959 4.25084 4.28429 4.36064 4.39713 4.42704 4.45956 4.53029 4.55333 4.58984 4.69874 4.74315 4.76043 4.85985 4.89530 4.92442 5.08741 5.20827 5.34221 5.35737 5.58726 5.67916 5.79657 5.89782 5.94602 5.96537 6.33938 6.48809 6.57364 6.75036 7.12791 7.44962 7.92646 8.54608 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.007143 B = 0.003980 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3919.214792 B = 7033.333159 C =10034.450709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.157 4.157 3 C 0.084 3.916 4 H 0.117 0.883 5 C 0.125 3.875 6 N -0.698 5.698 7 C 0.516 3.484 8 O -0.571 6.571 9 C 0.087 3.913 10 H 0.117 0.883 11 C 0.035 3.965 12 N -0.536 5.536 13 C 0.023 3.977 14 C 0.011 3.989 15 C 0.060 3.940 16 O -0.387 6.387 17 N -0.663 5.663 18 C 0.062 3.938 19 C 0.446 3.554 20 O -0.608 6.608 21 N -0.591 5.591 22 C -0.406 4.406 23 H 0.076 0.924 24 C -0.044 4.044 25 N -0.920 5.920 26 Si 1.131 2.869 27 H -0.275 1.275 28 H -0.273 1.273 29 H -0.270 1.270 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.039 0.961 33 H 0.088 0.912 34 H 0.058 0.942 35 H 0.049 0.951 36 H 0.084 0.916 37 H 0.418 0.582 38 H 0.096 0.904 39 H 0.018 0.982 40 H 0.097 0.903 41 H 0.066 0.934 42 H 0.018 0.982 43 H 0.029 0.971 44 H 0.117 0.883 45 H 0.123 0.877 46 H 0.079 0.921 47 H 0.353 0.647 48 H 0.089 0.911 49 H 0.067 0.933 50 H 0.380 0.620 51 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.786 6.613 -17.874 19.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.196 4.196 3 C -0.025 4.025 4 H 0.135 0.865 5 C 0.001 3.999 6 N -0.351 5.351 7 C 0.301 3.699 8 O -0.450 6.450 9 C 0.026 3.974 10 H 0.135 0.865 11 C -0.095 4.095 12 N -0.261 5.261 13 C -0.125 4.125 14 C -0.117 4.117 15 C -0.017 4.017 16 O -0.305 6.305 17 N -0.296 5.296 18 C -0.070 4.070 19 C 0.234 3.766 20 O -0.493 6.493 21 N -0.230 5.230 22 C -0.535 4.535 23 H 0.094 0.906 24 C -0.242 4.242 25 N -0.559 5.559 26 Si 0.951 3.049 27 H -0.200 1.200 28 H -0.198 1.198 29 H -0.195 1.195 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.107 0.893 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.102 0.898 37 H 0.255 0.745 38 H 0.114 0.886 39 H 0.037 0.963 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.037 0.963 43 H 0.047 0.953 44 H 0.135 0.865 45 H 0.141 0.859 46 H 0.097 0.903 47 H 0.174 0.826 48 H 0.107 0.893 49 H 0.084 0.916 50 H 0.214 0.786 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.514 7.265 -16.801 18.639 hybrid contribution -0.416 -1.535 -0.419 1.645 sum 3.098 5.730 -17.220 18.411 Atomic orbital electron populations 1.21740 0.94688 1.02575 1.01800 1.22173 0.97108 0.96881 1.03452 1.21988 0.93176 0.94601 0.92782 0.86470 1.21518 0.93686 0.82716 1.01932 1.45685 1.06227 1.11028 1.72166 1.20430 0.82842 0.90383 0.76246 1.90688 1.57060 1.47143 1.50131 1.21895 0.84458 0.93446 0.97650 0.86515 1.22583 1.01639 0.90069 0.95163 1.62319 1.13121 1.19726 1.30930 1.22455 1.01809 1.00881 0.87358 1.22982 0.87655 1.03296 0.97794 1.23008 1.00025 0.83140 0.95478 1.88074 1.19649 1.31647 1.91167 1.60153 1.18626 1.51072 0.99710 1.21520 1.01421 0.95310 0.88770 1.20804 0.83157 0.87533 0.85144 1.90492 1.45835 1.25861 1.87130 1.42039 1.52109 1.22594 1.06234 1.20501 1.38900 1.07349 0.86753 0.90606 1.27790 0.94329 0.97791 1.04252 1.70974 1.39157 1.14603 1.31180 0.82662 0.77268 0.74070 0.70872 1.20018 1.19822 1.19545 0.91013 0.91826 0.94176 0.89309 0.92373 0.93245 0.89791 0.74492 0.88611 0.96347 0.88488 0.91492 0.96328 0.95278 0.86517 0.85933 0.90268 0.82601 0.89312 0.91574 0.78614 0.93207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.57 71.98 0.69 -1.67 16 2 C -0.16 -2.56 5.15 30.59 0.16 -2.40 16 3 C 0.08 1.54 2.70 44.91 0.12 1.66 16 4 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 5 C 0.13 2.76 4.72 86.38 0.41 3.17 16 6 N -0.70 -16.70 5.35 -463.06 -2.48 -19.18 16 7 C 0.52 15.19 7.18 87.66 0.63 15.82 16 8 O -0.57 -21.67 16.51 15.90 0.26 -21.40 16 9 C 0.09 2.21 3.22 29.88 0.10 2.31 16 10 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 11 C 0.03 0.93 4.89 86.31 0.42 1.35 16 12 N -0.54 -12.24 4.99 -921.40 -4.59 -16.84 16 13 C 0.02 0.50 9.63 127.69 1.23 1.73 16 14 C 0.01 0.21 5.66 86.32 0.49 0.69 16 15 C 0.06 1.11 7.01 72.02 0.50 1.61 16 16 O -0.39 -10.75 10.01 -130.02 -1.30 -12.05 16 17 N -0.66 -17.07 5.35 -495.59 -2.65 -19.72 16 18 C 0.06 1.99 5.33 85.56 0.46 2.45 16 19 C 0.45 20.29 7.83 87.66 0.69 20.98 16 20 O -0.61 -31.73 15.90 -3.05 -0.05 -31.78 16 21 N -0.59 -29.74 5.28 -306.99 -1.62 -31.37 16 22 C -0.41 -22.93 9.68 84.04 0.81 -22.12 16 23 H 0.08 4.56 7.16 -2.91 -0.02 4.54 16 24 C -0.04 -2.38 5.50 84.93 0.47 -1.91 16 25 N -0.92 -51.92 13.68 21.66 0.30 -51.62 16 26 Si 1.13 48.40 29.92 68.60 2.05 50.46 16 27 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16 28 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 29 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.04 0.76 7.16 -2.38 -0.02 0.75 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.06 1.12 6.22 -2.38 -0.01 1.10 16 35 H 0.05 1.30 6.59 -2.39 -0.02 1.28 16 36 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.42 9.03 8.02 -92.71 -0.74 8.29 16 38 H 0.10 2.58 7.99 -2.39 -0.02 2.56 16 39 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.07 1.61 8.08 -2.39 -0.02 1.59 16 42 H 0.02 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.03 0.66 8.14 -2.38 -0.02 0.64 16 44 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.35 9.40 7.40 -89.69 -0.66 8.73 16 48 H 0.09 2.86 6.18 -2.39 -0.01 2.84 16 49 H 0.07 1.91 6.48 -2.38 -0.02 1.89 16 50 H 0.38 18.08 6.73 -92.71 -0.62 17.46 16 51 H 0.26 14.15 6.78 -92.71 -0.63 13.53 16 Total: -1.00 -76.46 407.01 -3.84 -80.30 By element: Atomic # 1 Polarization: 50.45 SS G_CDS: -0.93 Total: 49.52 kcal Atomic # 6 Polarization: 16.51 SS G_CDS: 7.17 Total: 23.68 kcal Atomic # 7 Polarization: -127.68 SS G_CDS: -11.05 Total: -138.73 kcal Atomic # 8 Polarization: -64.15 SS G_CDS: -1.09 Total: -65.23 kcal Atomic # 14 Polarization: 48.40 SS G_CDS: 2.05 Total: 50.46 kcal Total: -76.46 -3.84 -80.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698593667.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.066 kcal (2) G-P(sol) polarization free energy of solvation -76.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds