Wall clock time and date at job start Wed Apr 1 2020 01:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47344 * 2 1 4 4 C 1.53000 * 109.47304 * 239.99988 * 2 1 3 5 5 C 1.53003 * 109.46755 * 120.00049 * 2 1 3 6 6 H 1.08992 * 109.47003 * 304.30898 * 5 2 1 7 7 N 1.46499 * 109.47368 * 64.31057 * 5 2 1 8 8 C 1.34776 * 119.99944 * 275.27765 * 7 5 2 9 9 N 1.34779 * 120.00148 * 179.72652 * 8 7 5 10 10 O 1.21588 * 119.99802 * 359.71947 * 8 7 5 11 11 C 1.50702 * 109.46934 * 184.30864 * 5 2 1 12 12 O 1.21287 * 120.00150 * 260.03859 * 11 5 2 13 13 N 1.34775 * 119.99838 * 80.03783 * 11 5 2 14 14 C 1.46507 * 120.00107 * 184.87948 * 13 11 5 15 15 C 1.52992 * 109.47231 * 180.02562 * 14 13 11 16 16 H 1.08999 * 109.51708 * 305.00439 * 15 14 13 17 17 C 1.53296 * 109.51506 * 184.90079 * 15 14 13 18 18 N 1.47162 * 108.37768 * 187.82419 * 17 15 14 19 19 C 1.36937 * 120.94515 * 230.47160 * 18 17 15 20 20 H 1.08006 * 119.99560 * 31.48779 * 19 18 17 21 21 C 1.38808 * 120.00258 * 211.48838 * 19 18 17 22 22 N 1.31615 * 120.00124 * 10.83174 * 21 19 18 23 23 Si 1.86806 * 120.00095 * 190.83247 * 21 19 18 24 24 H 1.48503 * 109.47061 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47172 * 119.99774 * 23 21 19 26 26 H 1.48493 * 109.47376 * 240.00143 * 23 21 19 27 27 C 1.47151 * 118.07509 * 50.45801 * 18 17 15 28 28 C 1.53294 * 108.38198 * 309.49316 * 27 18 17 29 29 O 1.42961 * 109.51354 * 65.10405 * 15 14 13 30 30 H 1.09000 * 109.47640 * 300.00127 * 1 2 3 31 31 H 1.09006 * 109.47109 * 60.00177 * 1 2 3 32 32 H 1.08998 * 109.47299 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.46994 * 186.19373 * 3 2 1 34 34 H 1.08992 * 109.47067 * 306.20047 * 3 2 1 35 35 H 1.09003 * 109.46920 * 66.19509 * 3 2 1 36 36 H 1.09007 * 109.46826 * 300.00435 * 4 2 1 37 37 H 1.08997 * 109.47322 * 59.99890 * 4 2 1 38 38 H 1.09002 * 109.47348 * 180.02562 * 4 2 1 39 39 H 0.97003 * 119.99847 * 94.99258 * 7 5 2 40 40 H 0.97003 * 119.99704 * 359.97438 * 9 8 7 41 41 H 0.96992 * 120.00028 * 180.02562 * 9 8 7 42 42 H 0.96997 * 120.00031 * 4.89127 * 13 11 5 43 43 H 1.09000 * 109.47211 * 300.00498 * 14 13 11 44 44 H 1.09004 * 109.46551 * 60.00434 * 14 13 11 45 45 H 1.09005 * 109.67940 * 307.50327 * 17 15 14 46 46 H 1.09003 * 109.67910 * 68.05131 * 17 15 14 47 47 H 0.97008 * 119.99942 * 180.02562 * 22 21 19 48 48 H 1.09004 * 109.68158 * 189.77178 * 27 18 17 49 49 H 1.09004 * 109.71436 * 69.23789 * 27 18 17 50 50 H 1.09000 * 109.51433 * 292.37835 * 28 27 18 51 51 H 1.09001 * 109.51246 * 172.22557 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0399 -0.7213 1.2493 6 1 1.6149 -0.2540 2.1375 7 7 1.6382 -2.1292 1.1985 8 6 0.4175 -2.4978 1.6351 9 7 0.0458 -3.7923 1.5833 10 8 -0.3483 -1.6626 2.0758 11 6 3.5431 -0.6295 1.3039 12 8 4.2215 -1.5678 0.9426 13 7 4.1337 0.4952 1.7541 14 6 5.5922 0.6259 1.7075 15 6 6.0006 1.9868 2.2747 16 1 5.4764 2.7773 1.7378 17 6 7.5135 2.1752 2.1144 18 7 7.9074 3.3982 2.8319 19 6 8.6665 4.3598 2.2203 20 1 8.5757 4.5240 1.1566 21 6 9.5529 5.1235 2.9672 22 7 9.8234 4.7892 4.2111 23 14 10.3617 6.6260 2.2069 24 1 9.8933 6.7851 0.8067 25 1 9.9977 7.8339 2.9904 26 1 11.8366 6.4538 2.2194 27 6 7.4615 3.5577 4.2251 28 6 5.9510 3.3026 4.2815 29 8 5.6623 2.0467 3.6624 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.1243 1.4444 -0.1109 34 1 1.5890 1.9873 -0.8292 35 1 1.7701 1.9233 0.9403 36 1 1.6766 -1.7489 -1.2492 37 1 1.6767 -0.2075 -2.1392 38 1 3.1300 -0.7216 -1.2490 39 1 2.2491 -2.7955 0.8469 40 1 0.6567 -4.4586 1.2315 41 1 -0.8328 -4.0575 1.8971 42 1 3.5931 1.2180 2.1092 43 1 6.0472 -0.1665 2.3017 44 1 5.9312 0.5458 0.6746 45 1 8.0370 1.3176 2.5371 46 1 7.7613 2.2727 1.0575 47 1 10.4425 5.3231 4.7332 48 1 7.6756 4.5709 4.5654 49 1 7.9791 2.8398 4.8614 50 1 5.4272 4.0984 3.7520 51 1 5.6242 3.2796 5.3212 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698791319.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:27 Heat of formation + Delta-G solvation = -120.497041 kcal Electronic energy + Delta-G solvation = -31711.235959 eV Core-core repulsion = 27452.196735 eV Total energy + Delta-G solvation = -4259.039224 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.97824 -40.51376 -39.91172 -37.83584 -36.52800 -35.87122 -34.95373 -33.83020 -33.36083 -32.41135 -29.58134 -28.56342 -28.17456 -27.82604 -26.62815 -24.95065 -23.43540 -22.27600 -21.98704 -21.34755 -20.01494 -19.58764 -18.89709 -18.52716 -17.57355 -17.41116 -17.21791 -16.94980 -16.76491 -16.24757 -16.04346 -15.76993 -15.49199 -15.40796 -15.13447 -14.99108 -14.74015 -14.64048 -14.47812 -14.32439 -13.85641 -13.49780 -13.20922 -13.05441 -12.98231 -12.91822 -12.74507 -12.54628 -12.50515 -12.26291 -12.15894 -12.04265 -11.92101 -11.87957 -11.71116 -11.36774 -11.31124 -10.95681 -10.75281 -10.58433 -10.56639 -10.10890 -9.98048 -8.68418 -7.91023 -5.45107 1.44320 1.46094 1.47795 1.58155 1.68471 2.16654 2.32834 2.48064 2.79690 3.25748 3.47844 3.51914 3.63720 3.72232 3.87416 3.98881 4.08694 4.10420 4.27346 4.34988 4.48619 4.50189 4.55235 4.62955 4.73861 4.76360 4.78235 4.81182 4.91303 4.91565 5.02935 5.04265 5.07545 5.13968 5.24796 5.26616 5.32462 5.34651 5.44259 5.50546 5.57423 5.61247 5.86219 6.08008 6.28134 6.35054 6.44031 7.04291 7.07533 7.09915 7.67184 7.73575 8.29493 9.14724 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.022733 B = 0.002300 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.377839 B =12171.735730 C =12487.950599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.067 4.067 3 C -0.154 4.154 4 C -0.136 4.136 5 C 0.161 3.839 6 H 0.104 0.896 7 N -0.722 5.722 8 C 0.704 3.296 9 N -0.849 5.849 10 O -0.625 6.625 11 C 0.520 3.480 12 O -0.565 6.565 13 N -0.705 5.705 14 C 0.142 3.858 15 C 0.078 3.922 16 H 0.072 0.928 17 C 0.117 3.883 18 N -0.613 5.613 19 C -0.265 4.265 20 H 0.072 0.928 21 C -0.048 4.048 22 N -0.937 5.937 23 Si 0.972 3.028 24 H -0.263 1.263 25 H -0.289 1.289 26 H -0.293 1.293 27 C 0.146 3.854 28 C 0.054 3.946 29 O -0.391 6.391 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.046 0.954 39 H 0.411 0.589 40 H 0.412 0.588 41 H 0.422 0.578 42 H 0.413 0.587 43 H 0.063 0.937 44 H 0.094 0.906 45 H 0.016 0.984 46 H 0.074 0.926 47 H 0.251 0.749 48 H 0.063 0.937 49 H -0.002 1.002 50 H 0.052 0.948 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.411 -13.298 -9.003 25.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.069 4.069 3 C -0.212 4.212 4 C -0.194 4.194 5 C 0.051 3.949 6 H 0.122 0.878 7 N -0.379 5.379 8 C 0.402 3.598 9 N -0.418 5.418 10 O -0.506 6.506 11 C 0.305 3.695 12 O -0.445 6.445 13 N -0.357 5.357 14 C 0.017 3.983 15 C 0.018 3.982 16 H 0.090 0.910 17 C -0.009 4.009 18 N -0.337 5.337 19 C -0.395 4.395 20 H 0.090 0.910 21 C -0.244 4.244 22 N -0.582 5.582 23 Si 0.800 3.200 24 H -0.187 1.187 25 H -0.215 1.215 26 H -0.220 1.220 27 C 0.020 3.980 28 C -0.024 4.024 29 O -0.310 6.310 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.248 0.752 40 H 0.242 0.758 41 H 0.255 0.745 42 H 0.250 0.750 43 H 0.081 0.919 44 H 0.112 0.888 45 H 0.034 0.966 46 H 0.092 0.908 47 H 0.060 0.940 48 H 0.081 0.919 49 H 0.016 0.984 50 H 0.071 0.929 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -20.390 -13.235 -8.731 25.829 hybrid contribution 1.183 0.562 0.085 1.313 sum -19.206 -12.672 -8.646 24.581 Atomic orbital electron populations 1.21765 0.92699 1.01783 1.01455 1.20857 0.96888 0.95785 0.93360 1.22080 1.01497 0.94113 1.03467 1.21819 1.00409 1.00448 0.96701 1.20669 0.89801 0.83269 1.01198 0.87821 1.44672 1.16188 1.08707 1.68347 1.15991 0.81713 0.83826 0.78243 1.42793 1.22302 1.06216 1.70525 1.90966 1.53728 1.51595 1.54276 1.20655 0.90341 0.82090 0.76368 1.90675 1.66117 1.37837 1.49828 1.45897 1.07724 1.19093 1.63023 1.21223 0.80257 0.95421 1.01356 1.22678 0.95769 0.96746 0.82988 0.91017 1.21613 0.93167 0.88798 0.97329 1.44281 1.60296 1.18191 1.10949 1.19548 1.14903 1.11335 0.93721 0.91033 1.25990 0.97814 1.03337 0.97264 1.70157 1.37557 1.40270 1.10235 0.85141 0.77510 0.78958 0.78426 1.18730 1.21533 1.22035 1.21251 0.91500 0.99883 0.85329 1.23156 0.95800 0.85194 0.98233 1.87808 1.84231 1.35606 1.23345 0.93033 0.92106 0.93321 0.92220 0.90726 0.91450 0.92374 0.91385 0.93527 0.75203 0.75821 0.74450 0.74966 0.91904 0.88788 0.96620 0.90800 0.93962 0.91884 0.98420 0.92924 0.87588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.15 7.06 71.98 0.51 -1.64 16 2 C -0.07 -1.13 0.62 -52.18 -0.03 -1.16 16 3 C -0.15 -2.36 7.22 71.98 0.52 -1.84 16 4 C -0.14 -2.24 8.08 71.98 0.58 -1.65 16 5 C 0.16 3.12 1.95 44.25 0.09 3.21 16 6 H 0.10 2.18 7.58 -2.39 -0.02 2.17 16 7 N -0.72 -12.68 4.04 -461.41 -1.87 -14.55 16 8 C 0.70 13.10 7.36 179.05 1.32 14.42 16 9 N -0.85 -8.46 8.88 -184.74 -1.64 -10.10 16 10 O -0.62 -16.19 14.30 -3.99 -0.06 -16.25 16 11 C 0.52 11.90 5.47 87.66 0.48 12.38 16 12 O -0.57 -15.82 15.65 -3.05 -0.05 -15.87 16 13 N -0.71 -15.70 4.07 -463.05 -1.89 -17.58 16 14 C 0.14 3.73 5.35 86.38 0.46 4.19 16 15 C 0.08 2.44 2.81 30.69 0.09 2.52 16 16 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 17 C 0.12 4.66 6.02 86.35 0.52 5.18 16 18 N -0.61 -30.03 3.03 -697.50 -2.11 -32.15 16 19 C -0.27 -14.11 9.62 84.03 0.81 -13.30 16 20 H 0.07 3.66 7.85 -2.91 -0.02 3.64 16 21 C -0.05 -2.63 5.05 84.86 0.43 -2.21 16 22 N -0.94 -54.54 11.17 21.65 0.24 -54.30 16 23 Si 0.97 43.59 29.57 68.60 2.03 45.62 16 24 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 25 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 26 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 27 C 0.15 6.92 5.38 86.35 0.46 7.38 16 28 C 0.05 1.94 6.98 72.08 0.50 2.44 16 29 O -0.39 -13.47 10.33 -148.98 -1.54 -15.01 16 30 H 0.05 1.06 7.80 -2.39 -0.02 1.04 16 31 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.05 0.98 5.64 -2.39 -0.01 0.97 16 33 H 0.06 1.00 6.52 -2.39 -0.02 0.98 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 0.95 7.91 -2.39 -0.02 0.93 16 36 H 0.06 0.92 7.49 -2.38 -0.02 0.90 16 37 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 38 H 0.05 0.89 7.14 -2.39 -0.02 0.88 16 39 H 0.41 6.54 7.75 -92.71 -0.72 5.82 16 40 H 0.41 1.88 8.84 -92.71 -0.82 1.06 16 41 H 0.42 3.26 8.93 -92.71 -0.83 2.44 16 42 H 0.41 8.09 7.57 -92.71 -0.70 7.38 16 43 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 45 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 46 H 0.07 2.75 7.96 -2.39 -0.02 2.73 16 47 H 0.25 14.14 8.31 -92.70 -0.77 13.37 16 48 H 0.06 3.32 6.36 -2.39 -0.02 3.30 16 49 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 50 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 51 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 Total: -1.00 -70.91 396.41 -2.23 -73.15 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: -2.09 Total: 27.12 kcal Atomic # 6 Polarization: 23.19 SS G_CDS: 6.74 Total: 29.92 kcal Atomic # 7 Polarization: -121.42 SS G_CDS: -7.26 Total: -128.68 kcal Atomic # 8 Polarization: -45.48 SS G_CDS: -1.64 Total: -47.12 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -70.91 -2.23 -73.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698791319.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.351 kcal (2) G-P(sol) polarization free energy of solvation -70.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds