Wall clock time and date at job start Wed Apr 1 2020 01:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47301 * 2 1 4 4 C 1.53006 * 109.47083 * 239.99958 * 2 1 3 5 5 C 1.53000 * 109.47408 * 119.99854 * 2 1 3 6 6 H 1.09005 * 109.47626 * 185.57790 * 5 2 1 7 7 N 1.46501 * 109.47290 * 305.58282 * 5 2 1 8 8 C 1.34779 * 119.99880 * 275.00066 * 7 5 2 9 9 N 1.34775 * 119.99887 * 179.97438 * 8 7 5 10 10 O 1.21583 * 119.99733 * 359.97438 * 8 7 5 11 11 C 1.50707 * 109.46866 * 65.58136 * 5 2 1 12 12 O 1.21281 * 119.99629 * 266.23450 * 11 5 2 13 13 N 1.34769 * 120.00125 * 86.23627 * 11 5 2 14 14 C 1.46501 * 120.00053 * 174.84595 * 13 11 5 15 15 C 1.53006 * 109.47194 * 179.97438 * 14 13 11 16 16 H 1.09001 * 109.51005 * 60.00198 * 15 14 13 17 17 C 1.53286 * 109.55293 * 180.12811 * 15 14 13 18 18 N 1.47159 * 108.38427 * 172.25508 * 17 15 14 19 19 C 1.36936 * 120.98157 * 129.44456 * 18 17 15 20 20 H 1.07992 * 120.00185 * 330.75773 * 19 18 17 21 21 C 1.38815 * 119.99710 * 150.76767 * 19 18 17 22 22 N 1.31621 * 119.99990 * 162.29784 * 21 19 18 23 23 Si 1.86800 * 120.00154 * 342.29458 * 21 19 18 24 24 H 1.48501 * 109.47005 * 89.79147 * 23 21 19 25 25 H 1.48501 * 109.47166 * 209.79284 * 23 21 19 26 26 H 1.48498 * 109.46889 * 329.79586 * 23 21 19 27 27 C 1.47146 * 118.03135 * 309.46182 * 18 17 15 28 28 C 1.53294 * 108.38691 * 50.53893 * 27 18 17 29 29 O 1.42958 * 109.51376 * 299.90097 * 15 14 13 30 30 H 1.09007 * 109.47407 * 300.00251 * 1 2 3 31 31 H 1.08999 * 109.47083 * 59.99921 * 1 2 3 32 32 H 1.09003 * 109.47465 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47086 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.46813 * 299.99604 * 3 2 1 35 35 H 1.08997 * 109.47388 * 60.00017 * 3 2 1 36 36 H 1.08998 * 109.46560 * 303.63819 * 4 2 1 37 37 H 1.08997 * 109.47160 * 63.63910 * 4 2 1 38 38 H 1.08996 * 109.46945 * 183.64182 * 4 2 1 39 39 H 0.97003 * 119.99989 * 94.99336 * 7 5 2 40 40 H 0.97006 * 120.00076 * 0.02562 * 9 8 7 41 41 H 0.96996 * 119.99642 * 179.97438 * 9 8 7 42 42 H 0.97005 * 119.99995 * 354.84717 * 13 11 5 43 43 H 1.08998 * 109.47005 * 60.00191 * 14 13 11 44 44 H 1.08998 * 109.47301 * 299.99491 * 14 13 11 45 45 H 1.09000 * 109.68340 * 291.97341 * 17 15 14 46 46 H 1.08998 * 109.68421 * 52.52926 * 17 15 14 47 47 H 0.96998 * 119.99903 * 180.02562 * 22 21 19 48 48 H 1.09003 * 109.68344 * 290.81071 * 27 18 17 49 49 H 1.09007 * 109.71415 * 170.27890 * 27 18 17 50 50 H 1.08997 * 109.51600 * 187.77241 * 28 27 18 51 51 H 1.09001 * 109.55854 * 67.64348 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7212 1.2492 6 1 3.1254 -0.6355 1.3006 7 7 1.4451 -0.1126 2.4417 8 6 2.0124 0.9768 2.9966 9 7 1.4648 1.5371 4.0932 10 8 3.0182 1.4541 2.5078 11 6 1.6536 -2.1764 1.1821 12 8 0.6291 -2.5566 1.7080 13 7 2.4466 -3.0551 0.5376 14 6 2.1313 -4.4854 0.5680 15 6 3.1805 -5.2562 -0.2358 16 1 4.1659 -5.0925 0.2005 17 6 2.8505 -6.7529 -0.2079 18 7 3.7591 -7.4458 -1.1352 19 6 4.4680 -8.5473 -0.7361 20 1 4.7567 -8.6579 0.2986 21 6 4.8156 -9.5217 -1.6616 22 7 5.7690 -10.3849 -1.3818 23 14 3.9302 -9.6080 -3.3042 24 1 4.6409 -8.7600 -4.2947 25 1 3.9084 -11.0141 -3.7815 26 1 2.5377 -9.1185 -3.1422 27 6 3.8836 -6.9198 -2.5038 28 6 4.1633 -5.4149 -2.4198 29 8 3.1758 -4.7983 -1.5901 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6243 -1.7284 -1.2824 37 1 1.7308 -0.1712 -2.1380 38 1 3.1279 -0.7781 -1.2172 39 1 0.6428 -0.4935 2.8317 40 1 0.6626 1.1560 4.4834 41 1 1.8734 2.3208 4.4928 42 1 3.2262 -2.7405 0.0537 43 1 1.1464 -4.6497 0.1307 44 1 2.1338 -4.8362 1.5999 45 1 2.9899 -7.1408 0.8011 46 1 1.8181 -6.9071 -0.5217 47 1 6.0122 -11.0656 -2.0287 48 1 2.9552 -7.0908 -3.0487 49 1 4.7068 -7.4182 -3.0158 50 1 4.1222 -4.9807 -3.4187 51 1 5.1523 -5.2509 -1.9920 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698791320.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:30 Heat of formation + Delta-G solvation = -117.010257 kcal Electronic energy + Delta-G solvation = -31834.003923 eV Core-core repulsion = 27575.115897 eV Total energy + Delta-G solvation = -4258.888026 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.97500 -40.58599 -40.01914 -37.84087 -36.67117 -35.87786 -34.97195 -33.84785 -33.68285 -32.75735 -29.69720 -28.71250 -28.16861 -27.83602 -26.82854 -24.83530 -23.63726 -22.27090 -22.05048 -21.54157 -20.00148 -19.60074 -18.98435 -18.56961 -17.72685 -17.51083 -17.26338 -17.10285 -17.01473 -16.12100 -15.98856 -15.82884 -15.65849 -15.60967 -15.30117 -15.14147 -14.90931 -14.65597 -14.39789 -14.23622 -13.90070 -13.76060 -13.52054 -13.37919 -13.06707 -12.94905 -12.92082 -12.55097 -12.38598 -12.33567 -12.26309 -12.09630 -11.88768 -11.71000 -11.59755 -11.39319 -11.34425 -11.12958 -10.95128 -10.58107 -10.52738 -10.14730 -9.96105 -8.94855 -8.20774 -5.58135 1.26618 1.39950 1.40533 1.48436 1.70886 2.15933 2.33051 2.37302 2.69478 3.01431 3.19826 3.50255 3.64278 3.72205 3.86438 3.90349 4.00914 4.10163 4.17314 4.27853 4.34664 4.35272 4.49691 4.51104 4.57746 4.70051 4.76484 4.78658 4.81290 4.89039 4.91810 4.93746 5.02672 5.04295 5.13230 5.15103 5.26595 5.31479 5.34506 5.44136 5.50431 5.79011 5.85596 6.07649 6.07715 6.19067 6.43519 6.81386 7.03808 7.09512 7.52234 7.66766 7.93500 8.98630 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.023333 B = 0.002411 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.749507 B =11609.756296 C =12034.282759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.068 4.068 3 C -0.120 4.120 4 C -0.150 4.150 5 C 0.161 3.839 6 H 0.105 0.895 7 N -0.721 5.721 8 C 0.704 3.296 9 N -0.849 5.849 10 O -0.624 6.624 11 C 0.520 3.480 12 O -0.563 6.563 13 N -0.707 5.707 14 C 0.141 3.859 15 C 0.076 3.924 16 H 0.067 0.933 17 C 0.119 3.881 18 N -0.623 5.623 19 C -0.252 4.252 20 H 0.056 0.944 21 C -0.032 4.032 22 N -0.955 5.955 23 Si 0.949 3.051 24 H -0.266 1.266 25 H -0.311 1.311 26 H -0.267 1.267 27 C 0.079 3.921 28 C 0.059 3.941 29 O -0.379 6.379 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.045 0.955 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.411 0.589 40 H 0.412 0.588 41 H 0.422 0.578 42 H 0.414 0.586 43 H 0.072 0.928 44 H 0.090 0.910 45 H 0.072 0.928 46 H 0.039 0.961 47 H 0.263 0.737 48 H 0.035 0.965 49 H 0.064 0.936 50 H 0.122 0.878 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.984 26.445 5.058 29.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.070 4.070 3 C -0.177 4.177 4 C -0.208 4.208 5 C 0.051 3.949 6 H 0.123 0.877 7 N -0.379 5.379 8 C 0.402 3.598 9 N -0.418 5.418 10 O -0.505 6.505 11 C 0.306 3.694 12 O -0.442 6.442 13 N -0.359 5.359 14 C 0.017 3.983 15 C 0.016 3.984 16 H 0.085 0.915 17 C -0.007 4.007 18 N -0.349 5.349 19 C -0.381 4.381 20 H 0.074 0.926 21 C -0.227 4.227 22 N -0.601 5.601 23 Si 0.778 3.222 24 H -0.192 1.192 25 H -0.240 1.240 26 H -0.192 1.192 27 C -0.045 4.045 28 C -0.018 4.018 29 O -0.298 6.298 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.248 0.752 40 H 0.242 0.758 41 H 0.255 0.745 42 H 0.251 0.749 43 H 0.090 0.910 44 H 0.108 0.892 45 H 0.091 0.909 46 H 0.057 0.943 47 H 0.072 0.928 48 H 0.053 0.947 49 H 0.082 0.918 50 H 0.139 0.861 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.920 26.427 4.841 29.001 hybrid contribution -0.089 -1.086 -0.268 1.122 sum -11.008 25.340 4.573 28.004 Atomic orbital electron populations 1.21805 0.93633 1.01590 1.02291 1.20865 0.96662 0.96370 0.93089 1.21763 1.00862 0.93793 1.01298 1.22021 1.01829 1.00300 0.96648 1.20679 0.99830 0.88003 0.86424 0.87713 1.44672 1.32262 1.30568 1.30392 1.15991 0.82627 0.80245 0.80900 1.42800 1.33580 1.35421 1.30044 1.90967 1.27836 1.65902 1.65808 1.20630 0.83189 0.87993 0.77593 1.90679 1.25389 1.80329 1.47781 1.45868 1.30128 1.06696 1.53200 1.21243 0.97902 0.79357 0.99842 1.22665 0.98824 0.93605 0.83301 0.91547 1.21656 0.92931 0.91250 0.94869 1.44451 1.49636 1.31212 1.09561 1.18831 1.26776 0.96926 0.95598 0.92645 1.25949 0.98629 0.96007 1.02107 1.69928 1.30882 1.21354 1.37935 0.85906 0.80152 0.75322 0.80813 1.19211 1.23993 1.19215 1.22160 0.99516 0.95986 0.86863 1.23008 0.91273 0.91568 0.95992 1.87826 1.57520 1.64015 1.20420 0.92325 0.91620 0.93571 0.92984 0.92215 0.93228 0.92605 0.90935 0.91376 0.75206 0.75810 0.74452 0.74938 0.90997 0.89225 0.90910 0.94349 0.92784 0.94699 0.91802 0.86050 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 8.05 71.98 0.58 -1.68 16 2 C -0.07 -1.14 0.62 -52.18 -0.03 -1.17 16 3 C -0.12 -2.12 7.09 71.98 0.51 -1.61 16 4 C -0.15 -2.38 7.34 71.98 0.53 -1.85 16 5 C 0.16 2.97 1.94 44.25 0.09 3.05 16 6 H 0.11 2.06 7.58 -2.38 -0.02 2.04 16 7 N -0.72 -11.88 4.01 -461.40 -1.85 -13.73 16 8 C 0.70 12.43 7.43 179.05 1.33 13.76 16 9 N -0.85 -7.77 8.88 -184.75 -1.64 -9.41 16 10 O -0.62 -15.64 14.32 -3.98 -0.06 -15.69 16 11 C 0.52 11.18 5.35 87.66 0.47 11.65 16 12 O -0.56 -14.85 15.39 -3.03 -0.05 -14.90 16 13 N -0.71 -14.59 4.39 -463.05 -2.03 -16.62 16 14 C 0.14 3.37 5.38 86.38 0.46 3.83 16 15 C 0.08 2.16 2.86 30.69 0.09 2.25 16 16 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 17 C 0.12 4.30 6.03 86.35 0.52 4.83 16 18 N -0.62 -28.17 2.80 -697.56 -1.95 -30.13 16 19 C -0.25 -13.89 10.09 84.03 0.85 -13.04 16 20 H 0.06 3.33 8.06 -2.91 -0.02 3.31 16 21 C -0.03 -1.81 5.28 84.86 0.45 -1.36 16 22 N -0.96 -58.88 13.97 21.65 0.30 -58.57 16 23 Si 0.95 45.52 24.28 68.60 1.67 47.18 16 24 H -0.27 -11.73 6.55 99.48 0.65 -11.08 16 25 H -0.31 -15.28 7.11 99.48 0.71 -14.57 16 26 H -0.27 -12.50 6.62 99.48 0.66 -11.85 16 27 C 0.08 3.17 4.38 86.35 0.38 3.55 16 28 C 0.06 1.80 6.99 72.08 0.50 2.30 16 29 O -0.38 -10.99 10.14 -148.98 -1.51 -12.50 16 30 H 0.06 0.92 7.46 -2.38 -0.02 0.91 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.05 0.92 6.94 -2.39 -0.02 0.91 16 33 H 0.05 1.04 7.88 -2.39 -0.02 1.02 16 34 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.05 0.98 5.63 -2.39 -0.01 0.97 16 36 H 0.05 1.03 6.57 -2.39 -0.02 1.01 16 37 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.07 0.98 8.03 -2.39 -0.02 0.96 16 39 H 0.41 6.04 7.81 -92.71 -0.72 5.32 16 40 H 0.41 1.54 8.84 -92.70 -0.82 0.72 16 41 H 0.42 2.98 8.93 -92.71 -0.83 2.15 16 42 H 0.41 7.48 7.61 -92.70 -0.71 6.78 16 43 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.07 2.62 7.96 -2.39 -0.02 2.60 16 46 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 48 H 0.04 1.40 6.83 -2.39 -0.02 1.38 16 49 H 0.06 2.77 4.80 -2.38 -0.01 2.76 16 50 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 51 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -72.79 389.78 -2.60 -75.39 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: -2.20 Total: 24.48 kcal Atomic # 6 Polarization: 17.78 SS G_CDS: 6.72 Total: 24.50 kcal Atomic # 7 Polarization: -121.29 SS G_CDS: -7.17 Total: -128.46 kcal Atomic # 8 Polarization: -41.48 SS G_CDS: -1.61 Total: -43.09 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.67 Total: 47.18 kcal Total: -72.79 -2.60 -75.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698791320.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.621 kcal (2) G-P(sol) polarization free energy of solvation -72.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds