Wall clock time and date at job start Wed Apr 1 2020 01:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47288 * 2 1 4 4 C 1.52997 * 109.46808 * 240.00295 * 2 1 3 5 5 C 1.52995 * 109.47280 * 120.00398 * 2 1 3 6 6 H 1.09003 * 109.47322 * 303.27745 * 5 2 1 7 7 N 1.46502 * 109.47037 * 183.28026 * 5 2 1 8 8 C 1.34772 * 120.00117 * 85.00096 * 7 5 2 9 9 N 1.34778 * 120.00329 * 179.97438 * 8 7 5 10 10 O 1.21588 * 120.00205 * 359.97438 * 8 7 5 11 11 C 1.50699 * 109.47394 * 63.28042 * 5 2 1 12 12 O 1.21276 * 120.00085 * 93.24352 * 11 5 2 13 13 N 1.34773 * 119.99705 * 273.24718 * 11 5 2 14 14 C 1.46500 * 119.99825 * 185.28359 * 13 11 5 15 15 C 1.53002 * 109.47181 * 179.97438 * 14 13 11 16 16 H 1.09007 * 109.51059 * 60.00161 * 15 14 13 17 17 C 1.53299 * 109.55364 * 180.12312 * 15 14 13 18 18 N 1.47154 * 108.38329 * 172.25209 * 17 15 14 19 19 C 1.36937 * 120.98240 * 129.44308 * 18 17 15 20 20 H 1.08006 * 120.00294 * 210.64535 * 19 18 17 21 21 C 1.38817 * 119.99837 * 30.64167 * 19 18 17 22 22 N 1.31616 * 120.00130 * 10.38760 * 21 19 18 23 23 Si 1.86799 * 120.00010 * 190.38208 * 21 19 18 24 24 H 1.48505 * 109.46989 * 90.00125 * 23 21 19 25 25 H 1.48500 * 109.47186 * 210.00186 * 23 21 19 26 26 H 1.48505 * 109.47092 * 330.00343 * 23 21 19 27 27 C 1.47152 * 118.03472 * 309.46589 * 18 17 15 28 28 C 1.53292 * 108.38438 * 50.53727 * 27 18 17 29 29 O 1.42961 * 109.22674 * 307.69489 * 28 27 18 30 30 H 1.09006 * 109.46969 * 303.88717 * 1 2 3 31 31 H 1.08997 * 109.47407 * 63.88720 * 1 2 3 32 32 H 1.09001 * 109.47249 * 183.89143 * 1 2 3 33 33 H 1.08993 * 109.47544 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47400 * 300.00842 * 3 2 1 35 35 H 1.09007 * 109.46922 * 60.00285 * 3 2 1 36 36 H 1.08999 * 109.47457 * 299.99443 * 4 2 1 37 37 H 1.09003 * 109.47260 * 60.00343 * 4 2 1 38 38 H 1.09004 * 109.47100 * 179.97438 * 4 2 1 39 39 H 0.97001 * 120.00018 * 264.99987 * 7 5 2 40 40 H 0.97001 * 119.99806 * 0.02562 * 9 8 7 41 41 H 0.96998 * 120.00511 * 179.97438 * 9 8 7 42 42 H 0.97002 * 120.00295 * 5.27412 * 13 11 5 43 43 H 1.08994 * 109.47731 * 59.99791 * 14 13 11 44 44 H 1.08997 * 109.46941 * 299.99408 * 14 13 11 45 45 H 1.08996 * 109.68296 * 291.97526 * 17 15 14 46 46 H 1.08999 * 109.68131 * 52.53196 * 17 15 14 47 47 H 0.96994 * 120.00040 * 179.97438 * 22 21 19 48 48 H 1.08997 * 109.68184 * 290.80788 * 27 18 17 49 49 H 1.09010 * 109.70963 * 170.27585 * 27 18 17 50 50 H 1.09005 * 109.51435 * 187.76953 * 28 27 18 51 51 H 1.08997 * 109.55841 * 67.64428 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2491 6 1 1.6295 -0.2426 2.1382 7 7 3.5029 -0.6532 1.2893 8 6 4.1130 0.4248 1.8203 9 7 5.4589 0.4873 1.8577 10 8 3.4494 1.3411 2.2657 11 6 1.6052 -2.1637 1.2091 12 8 2.3404 -3.0058 0.7389 13 7 0.3994 -2.5176 1.6959 14 6 0.0232 -3.9319 1.7636 15 6 -1.3840 -4.0579 2.3508 16 1 -2.0921 -3.5239 1.7170 17 6 -1.7783 -5.5374 2.4254 18 7 -3.0486 -5.6426 3.1607 19 6 -4.1027 -6.3512 2.6490 20 1 -5.1154 -6.0545 2.8790 21 6 -3.8697 -7.4509 1.8345 22 7 -2.6523 -7.9372 1.7177 23 14 -5.2841 -8.2406 0.9043 24 1 -5.4221 -7.5965 -0.4267 25 1 -5.0123 -9.6897 0.7271 26 1 -6.5424 -8.0633 1.6729 27 6 -3.1527 -4.9635 4.4620 28 6 -2.6915 -3.5120 4.2882 29 8 -1.4043 -3.4984 3.6662 30 1 -0.3633 0.5730 0.8532 31 1 -0.3634 0.4523 -0.9227 32 1 -0.3634 -1.0253 0.0697 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6767 -1.7489 -1.2493 37 1 1.6766 -0.2073 -2.1393 38 1 3.1300 -0.7208 -1.2496 39 1 4.0324 -1.3840 0.9336 40 1 5.9883 -0.2435 1.5021 41 1 5.8980 1.2633 2.2396 42 1 -0.2195 -1.8360 2.0015 43 1 0.7304 -4.4661 2.3981 44 1 0.0387 -4.3603 0.7615 45 1 -1.9030 -5.9353 1.4183 46 1 -1.0037 -6.0978 2.9488 47 1 -2.4896 -8.7058 1.1489 48 1 -2.5165 -5.4662 5.1904 49 1 -4.1876 -4.9814 4.8042 50 1 -2.6295 -3.0303 5.2640 51 1 -3.4041 -2.9753 3.6619 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698791321.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:36 Heat of formation + Delta-G solvation = -94.534132 kcal Electronic energy + Delta-G solvation = -31882.125538 eV Core-core repulsion = 27624.212150 eV Total energy + Delta-G solvation = -4257.913388 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.04504 -39.43375 -38.49519 -36.90764 -34.97620 -34.38221 -34.11279 -33.12129 -31.41718 -31.03097 -28.19039 -27.38364 -27.19382 -26.91990 -25.14992 -23.30646 -21.86539 -21.45375 -20.85363 -19.76174 -19.11711 -18.74470 -17.80403 -16.99447 -16.45903 -16.31994 -16.05548 -15.77287 -15.27836 -14.99847 -14.77158 -14.44418 -14.31695 -14.24611 -13.92992 -13.76057 -13.53576 -13.26646 -12.99662 -12.97976 -12.77503 -12.30147 -12.24508 -12.06725 -11.72894 -11.57646 -11.45104 -11.09124 -11.03296 -10.94052 -10.90541 -10.76355 -10.45649 -10.42287 -10.28259 -10.13659 -9.88151 -9.87517 -9.68450 -9.21956 -9.05893 -8.92094 -8.60774 -6.73813 -5.88307 -3.38144 2.37187 2.69700 2.99428 3.29862 3.32743 3.38256 3.39507 4.21056 4.24138 4.39474 4.52191 4.57127 4.70958 4.91184 5.14951 5.18370 5.31847 5.33258 5.50332 5.51272 5.57165 5.58176 5.69402 5.77925 5.82393 5.83298 5.89868 5.93715 5.97999 6.02485 6.07683 6.14273 6.19649 6.23050 6.30257 6.32957 6.43726 6.47697 6.58725 6.68092 6.76136 7.03596 7.45163 7.51861 7.67358 7.73228 7.80381 8.17179 8.32319 8.40689 9.07886 9.68634 10.27744 11.19488 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.018167 B = 0.002534 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.928301 B =11047.460646 C =11406.014670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.072 4.072 3 C -0.127 4.127 4 C -0.142 4.142 5 C 0.156 3.844 6 H 0.108 0.892 7 N -0.725 5.725 8 C 0.709 3.291 9 N -0.868 5.868 10 O -0.590 6.590 11 C 0.514 3.486 12 O -0.540 6.540 13 N -0.712 5.712 14 C 0.132 3.868 15 C 0.054 3.946 16 H 0.056 0.944 17 C 0.155 3.845 18 N -0.594 5.594 19 C -0.258 4.258 20 H 0.067 0.933 21 C 0.006 3.994 22 N -0.903 5.903 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.289 1.289 26 H -0.278 1.278 27 C 0.109 3.891 28 C 0.050 3.950 29 O -0.390 6.390 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.048 0.952 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.406 0.594 40 H 0.397 0.603 41 H 0.415 0.585 42 H 0.405 0.595 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.095 0.905 46 H 0.031 0.969 47 H 0.256 0.744 48 H 0.027 0.973 49 H 0.062 0.938 50 H 0.082 0.918 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.258 17.133 -2.712 21.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.074 4.074 3 C -0.184 4.184 4 C -0.200 4.200 5 C 0.046 3.954 6 H 0.126 0.874 7 N -0.383 5.383 8 C 0.407 3.593 9 N -0.436 5.436 10 O -0.468 6.468 11 C 0.298 3.702 12 O -0.417 6.417 13 N -0.363 5.363 14 C 0.008 3.992 15 C -0.006 4.006 16 H 0.074 0.926 17 C 0.028 3.972 18 N -0.318 5.318 19 C -0.387 4.387 20 H 0.085 0.915 21 C -0.193 4.193 22 N -0.547 5.547 23 Si 0.737 3.263 24 H -0.213 1.213 25 H -0.215 1.215 26 H -0.204 1.204 27 C -0.018 4.018 28 C -0.028 4.028 29 O -0.310 6.310 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.242 0.758 40 H 0.225 0.775 41 H 0.247 0.753 42 H 0.240 0.760 43 H 0.093 0.907 44 H 0.102 0.898 45 H 0.113 0.887 46 H 0.049 0.951 47 H 0.067 0.933 48 H 0.045 0.955 49 H 0.080 0.920 50 H 0.100 0.900 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 12.264 17.078 -2.682 21.196 hybrid contribution -0.504 -0.766 -0.577 1.084 sum 11.760 16.312 -3.259 20.371 Atomic orbital electron populations 1.22043 0.93553 1.02740 1.02844 1.20876 0.96103 0.96428 0.94003 1.21863 1.00999 0.93810 1.01769 1.21894 1.01201 1.00576 0.96293 1.20741 0.80750 0.93119 1.00749 0.87372 1.44745 1.06247 1.21618 1.65656 1.15803 0.82293 0.82654 0.78501 1.42961 1.05378 1.26116 1.69163 1.90977 1.63939 1.38302 1.53568 1.20401 0.82010 0.90065 0.77704 1.90688 1.53509 1.52324 1.45201 1.46056 1.16988 1.09772 1.63524 1.21470 0.95587 0.80695 1.01405 1.23178 0.94361 0.99198 0.83847 0.92597 1.21291 0.87738 0.88391 0.99760 1.43990 1.12420 1.59537 1.15844 1.19175 0.86547 1.05834 1.27155 0.91516 1.25203 0.96669 0.96024 1.01427 1.69954 1.19397 1.24757 1.40590 0.86220 0.81660 0.78512 0.79921 1.21289 1.21548 1.20356 1.21615 0.99321 0.91411 0.89403 1.23010 0.84838 0.98323 0.96615 1.87776 1.30751 1.82251 1.30198 0.91872 0.91652 0.91834 0.92858 0.93280 0.91360 0.91984 0.92525 0.92576 0.75802 0.77512 0.75346 0.76007 0.90677 0.89777 0.88687 0.95068 0.93348 0.95548 0.91968 0.89999 0.93852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 7.96 37.16 0.30 -1.15 16 2 C -0.07 -0.73 0.62 -154.51 -0.10 -0.83 16 3 C -0.13 -1.31 6.97 37.16 0.26 -1.05 16 4 C -0.14 -1.46 7.94 37.16 0.29 -1.16 16 5 C 0.16 1.76 1.93 -69.08 -0.13 1.62 16 6 H 0.11 1.28 7.58 -51.93 -0.39 0.89 16 7 N -0.73 -7.38 4.27 -59.81 -0.26 -7.64 16 8 C 0.71 7.45 7.08 -86.92 -0.62 6.83 16 9 N -0.87 -5.52 8.88 27.63 0.25 -5.27 16 10 O -0.59 -8.18 14.30 5.29 0.08 -8.10 16 11 C 0.51 6.84 5.31 -10.99 -0.06 6.78 16 12 O -0.54 -8.54 15.28 5.56 0.08 -8.46 16 13 N -0.71 -9.53 4.44 -60.30 -0.27 -9.79 16 14 C 0.13 2.12 5.38 -4.04 -0.02 2.10 16 15 C 0.05 0.97 2.86 -26.58 -0.08 0.90 16 16 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 17 C 0.15 3.55 4.67 -3.53 -0.02 3.53 16 18 N -0.59 -14.52 3.04 -171.82 -0.52 -15.04 16 19 C -0.26 -6.86 9.64 -15.06 -0.15 -7.00 16 20 H 0.07 1.74 7.85 -52.48 -0.41 1.33 16 21 C 0.01 0.16 5.07 -17.43 -0.09 0.07 16 22 N -0.90 -25.47 11.07 55.49 0.61 -24.86 16 23 Si 0.91 21.11 29.57 -169.99 -5.03 16.09 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 C 0.11 2.22 6.73 -3.54 -0.02 2.20 16 28 C 0.05 0.85 6.98 37.31 0.26 1.11 16 29 O -0.39 -7.02 10.14 -35.23 -0.36 -7.38 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.65 5.99 -51.93 -0.31 0.34 16 33 H 0.05 0.58 5.87 -51.93 -0.30 0.28 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.79 7.30 -51.93 -0.38 0.41 16 36 H 0.06 0.74 6.70 -51.93 -0.35 0.40 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.56 7.70 -51.93 -0.40 0.16 16 39 H 0.41 3.84 7.82 -40.82 -0.32 3.52 16 40 H 0.40 1.53 8.84 -40.82 -0.36 1.17 16 41 H 0.41 2.14 8.93 -40.82 -0.36 1.78 16 42 H 0.40 4.85 7.50 -40.82 -0.31 4.54 16 43 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.10 2.40 6.27 -51.93 -0.33 2.08 16 46 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 48 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.06 1.21 7.96 -51.92 -0.41 0.79 16 50 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 51 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 395.62 15.07 5.96 5.96 Total: -1.00 -32.41 395.62 -8.03 -40.44 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -8.42 Total: 10.09 kcal Atomic # 6 Polarization: 14.13 SS G_CDS: -0.16 Total: 13.96 kcal Atomic # 7 Polarization: -62.42 SS G_CDS: -0.19 Total: -62.61 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.20 Total: -23.94 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.41 -8.03 -40.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698791321.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.090 kcal (2) G-P(sol) polarization free energy of solvation -32.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds