Wall clock time and date at job start Wed Apr 1 2020 01:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47288 * 2 1 4 4 C 1.52997 * 109.46808 * 240.00295 * 2 1 3 5 5 C 1.52995 * 109.47280 * 120.00398 * 2 1 3 6 6 H 1.09003 * 109.47322 * 303.27745 * 5 2 1 7 7 N 1.46502 * 109.47037 * 183.28026 * 5 2 1 8 8 C 1.34772 * 120.00117 * 85.00096 * 7 5 2 9 9 N 1.34778 * 120.00329 * 179.97438 * 8 7 5 10 10 O 1.21588 * 120.00205 * 359.97438 * 8 7 5 11 11 C 1.50699 * 109.47394 * 63.28042 * 5 2 1 12 12 O 1.21276 * 120.00085 * 93.24352 * 11 5 2 13 13 N 1.34773 * 119.99705 * 273.24718 * 11 5 2 14 14 C 1.46500 * 119.99825 * 185.28359 * 13 11 5 15 15 C 1.53002 * 109.47181 * 179.97438 * 14 13 11 16 16 H 1.09007 * 109.51059 * 60.00161 * 15 14 13 17 17 C 1.53299 * 109.55364 * 180.12312 * 15 14 13 18 18 N 1.47154 * 108.38329 * 172.25209 * 17 15 14 19 19 C 1.36937 * 120.98240 * 129.44308 * 18 17 15 20 20 H 1.08006 * 120.00294 * 210.64535 * 19 18 17 21 21 C 1.38817 * 119.99837 * 30.64167 * 19 18 17 22 22 N 1.31616 * 120.00130 * 10.38760 * 21 19 18 23 23 Si 1.86799 * 120.00010 * 190.38208 * 21 19 18 24 24 H 1.48505 * 109.46989 * 90.00125 * 23 21 19 25 25 H 1.48500 * 109.47186 * 210.00186 * 23 21 19 26 26 H 1.48505 * 109.47092 * 330.00343 * 23 21 19 27 27 C 1.47152 * 118.03472 * 309.46589 * 18 17 15 28 28 C 1.53292 * 108.38438 * 50.53727 * 27 18 17 29 29 O 1.42961 * 109.22674 * 307.69489 * 28 27 18 30 30 H 1.09006 * 109.46969 * 303.88717 * 1 2 3 31 31 H 1.08997 * 109.47407 * 63.88720 * 1 2 3 32 32 H 1.09001 * 109.47249 * 183.89143 * 1 2 3 33 33 H 1.08993 * 109.47544 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47400 * 300.00842 * 3 2 1 35 35 H 1.09007 * 109.46922 * 60.00285 * 3 2 1 36 36 H 1.08999 * 109.47457 * 299.99443 * 4 2 1 37 37 H 1.09003 * 109.47260 * 60.00343 * 4 2 1 38 38 H 1.09004 * 109.47100 * 179.97438 * 4 2 1 39 39 H 0.97001 * 120.00018 * 264.99987 * 7 5 2 40 40 H 0.97001 * 119.99806 * 0.02562 * 9 8 7 41 41 H 0.96998 * 120.00511 * 179.97438 * 9 8 7 42 42 H 0.97002 * 120.00295 * 5.27412 * 13 11 5 43 43 H 1.08994 * 109.47731 * 59.99791 * 14 13 11 44 44 H 1.08997 * 109.46941 * 299.99408 * 14 13 11 45 45 H 1.08996 * 109.68296 * 291.97526 * 17 15 14 46 46 H 1.08999 * 109.68131 * 52.53196 * 17 15 14 47 47 H 0.96994 * 120.00040 * 179.97438 * 22 21 19 48 48 H 1.08997 * 109.68184 * 290.80788 * 27 18 17 49 49 H 1.09010 * 109.70963 * 170.27585 * 27 18 17 50 50 H 1.09005 * 109.51435 * 187.76953 * 28 27 18 51 51 H 1.08997 * 109.55841 * 67.64428 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2491 6 1 1.6295 -0.2426 2.1382 7 7 3.5029 -0.6532 1.2893 8 6 4.1130 0.4248 1.8203 9 7 5.4589 0.4873 1.8577 10 8 3.4494 1.3411 2.2657 11 6 1.6052 -2.1637 1.2091 12 8 2.3404 -3.0058 0.7389 13 7 0.3994 -2.5176 1.6959 14 6 0.0232 -3.9319 1.7636 15 6 -1.3840 -4.0579 2.3508 16 1 -2.0921 -3.5239 1.7170 17 6 -1.7783 -5.5374 2.4254 18 7 -3.0486 -5.6426 3.1607 19 6 -4.1027 -6.3512 2.6490 20 1 -5.1154 -6.0545 2.8790 21 6 -3.8697 -7.4509 1.8345 22 7 -2.6523 -7.9372 1.7177 23 14 -5.2841 -8.2406 0.9043 24 1 -5.4221 -7.5965 -0.4267 25 1 -5.0123 -9.6897 0.7271 26 1 -6.5424 -8.0633 1.6729 27 6 -3.1527 -4.9635 4.4620 28 6 -2.6915 -3.5120 4.2882 29 8 -1.4043 -3.4984 3.6662 30 1 -0.3633 0.5730 0.8532 31 1 -0.3634 0.4523 -0.9227 32 1 -0.3634 -1.0253 0.0697 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6767 -1.7489 -1.2493 37 1 1.6766 -0.2073 -2.1393 38 1 3.1300 -0.7208 -1.2496 39 1 4.0324 -1.3840 0.9336 40 1 5.9883 -0.2435 1.5021 41 1 5.8980 1.2633 2.2396 42 1 -0.2195 -1.8360 2.0015 43 1 0.7304 -4.4661 2.3981 44 1 0.0387 -4.3603 0.7615 45 1 -1.9030 -5.9353 1.4183 46 1 -1.0037 -6.0978 2.9488 47 1 -2.4896 -8.7058 1.1489 48 1 -2.5165 -5.4662 5.1904 49 1 -4.1876 -4.9814 4.8042 50 1 -2.6295 -3.0303 5.2640 51 1 -3.4041 -2.9753 3.6619 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698791321.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:35 Heat of formation + Delta-G solvation = -120.612220 kcal Electronic energy + Delta-G solvation = -31883.256369 eV Core-core repulsion = 27624.212150 eV Total energy + Delta-G solvation = -4259.044219 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.99533 -40.52320 -39.92056 -37.82859 -36.48269 -35.91480 -34.96884 -33.85903 -33.25237 -32.57103 -29.45179 -28.61959 -28.19085 -27.83180 -26.66630 -25.03572 -23.36663 -22.27383 -21.99212 -21.36469 -20.01239 -19.60636 -18.94712 -18.52910 -17.57113 -17.51793 -17.10917 -16.94020 -16.90388 -16.10904 -16.07292 -15.72052 -15.53123 -15.42911 -15.10859 -15.02336 -14.72217 -14.67840 -14.51847 -14.28743 -13.93230 -13.53756 -13.19145 -13.05265 -12.93206 -12.89344 -12.71277 -12.54428 -12.52911 -12.30693 -12.17030 -12.08468 -11.92492 -11.88680 -11.74036 -11.34888 -11.29967 -10.97982 -10.74119 -10.59111 -10.57973 -10.16750 -9.97547 -8.69349 -7.90862 -5.44532 1.37369 1.46979 1.47406 1.56687 1.72922 2.15565 2.31041 2.47619 2.79833 3.24911 3.47366 3.52798 3.63255 3.71591 3.85920 4.03781 4.08065 4.08802 4.28204 4.33343 4.45737 4.49289 4.52558 4.61971 4.68705 4.73616 4.79779 4.83451 4.90418 4.97923 5.00926 5.02880 5.08340 5.13243 5.23535 5.24295 5.29848 5.34212 5.42295 5.49267 5.55288 5.59951 5.84940 6.07860 6.27959 6.34739 6.43424 7.03088 7.06936 7.09093 7.66559 7.73656 8.29157 9.14398 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.018167 B = 0.002534 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.928301 B =11047.460646 C =11406.014670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.068 4.068 3 C -0.117 4.117 4 C -0.138 4.138 5 C 0.163 3.837 6 H 0.106 0.894 7 N -0.723 5.723 8 C 0.706 3.294 9 N -0.849 5.849 10 O -0.624 6.624 11 C 0.517 3.483 12 O -0.565 6.565 13 N -0.704 5.704 14 C 0.144 3.856 15 C 0.074 3.926 16 H 0.065 0.935 17 C 0.162 3.838 18 N -0.614 5.614 19 C -0.267 4.267 20 H 0.072 0.928 21 C -0.048 4.048 22 N -0.936 5.936 23 Si 0.972 3.028 24 H -0.282 1.282 25 H -0.296 1.296 26 H -0.267 1.267 27 C 0.102 3.898 28 C 0.057 3.943 29 O -0.390 6.390 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.045 0.955 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.042 0.958 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.410 0.590 40 H 0.411 0.589 41 H 0.423 0.577 42 H 0.414 0.586 43 H 0.060 0.940 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.000 1.000 47 H 0.252 0.748 48 H 0.014 0.986 49 H 0.071 0.929 50 H 0.119 0.881 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.980 19.148 -2.851 22.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.070 4.070 3 C -0.175 4.175 4 C -0.195 4.195 5 C 0.053 3.947 6 H 0.124 0.876 7 N -0.380 5.380 8 C 0.404 3.596 9 N -0.418 5.418 10 O -0.505 6.505 11 C 0.303 3.697 12 O -0.444 6.444 13 N -0.356 5.356 14 C 0.020 3.980 15 C 0.015 3.985 16 H 0.083 0.917 17 C 0.036 3.964 18 N -0.339 5.339 19 C -0.397 4.397 20 H 0.089 0.911 21 C -0.243 4.243 22 N -0.581 5.581 23 Si 0.799 3.201 24 H -0.209 1.209 25 H -0.222 1.222 26 H -0.192 1.192 27 C -0.023 4.023 28 C -0.021 4.021 29 O -0.309 6.309 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.247 0.753 40 H 0.242 0.758 41 H 0.256 0.744 42 H 0.251 0.749 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.085 0.915 46 H 0.018 0.982 47 H 0.061 0.939 48 H 0.032 0.968 49 H 0.090 0.910 50 H 0.137 0.863 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.013 19.126 -2.802 22.759 hybrid contribution -0.382 -1.401 -0.463 1.524 sum 11.632 17.725 -3.265 21.451 Atomic orbital electron populations 1.22050 0.92831 1.02421 1.03847 1.20859 0.96677 0.96194 0.93223 1.21749 1.00418 0.93570 1.01729 1.21848 1.01289 0.99509 0.96882 1.20664 0.81513 0.91235 1.01322 0.87646 1.44683 1.05847 1.21805 1.65689 1.15954 0.83259 0.82144 0.78255 1.42789 1.04034 1.26829 1.68168 1.90957 1.65015 1.39433 1.55097 1.20747 0.81398 0.90776 0.76746 1.90680 1.54175 1.53288 1.46248 1.45881 1.17435 1.08670 1.63599 1.21130 0.94044 0.82233 1.00609 1.22797 0.95529 0.95719 0.84475 0.91713 1.21061 0.86657 0.91210 0.97521 1.44291 1.12160 1.59862 1.17596 1.19523 0.87433 1.05852 1.26845 0.91062 1.25970 0.98869 0.96830 1.02667 1.70127 1.21287 1.25181 1.41505 0.85210 0.79197 0.76944 0.78725 1.20865 1.22248 1.19187 1.21824 0.99928 0.93206 0.87371 1.23077 0.84398 0.95938 0.98659 1.87792 1.31614 1.81659 1.29874 0.91004 0.90623 0.92717 0.93612 0.92012 0.92582 0.93887 0.91306 0.92429 0.75326 0.75847 0.74395 0.74876 0.92133 0.90243 0.91549 0.98236 0.93913 0.96762 0.91026 0.86270 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 7.96 71.98 0.57 -2.03 16 2 C -0.07 -1.27 0.62 -52.18 -0.03 -1.30 16 3 C -0.12 -2.22 6.97 71.98 0.50 -1.71 16 4 C -0.14 -2.65 7.94 71.98 0.57 -2.07 16 5 C 0.16 3.49 1.93 44.24 0.09 3.57 16 6 H 0.11 2.37 7.58 -2.39 -0.02 2.36 16 7 N -0.72 -13.93 4.27 -461.41 -1.97 -15.90 16 8 C 0.71 13.92 7.08 179.06 1.27 15.19 16 9 N -0.85 -9.34 8.88 -184.75 -1.64 -10.98 16 10 O -0.62 -16.67 14.30 -3.99 -0.06 -16.73 16 11 C 0.52 13.45 5.31 87.66 0.47 13.92 16 12 O -0.56 -17.77 15.28 -3.02 -0.05 -17.82 16 13 N -0.70 -18.26 4.44 -463.08 -2.05 -20.31 16 14 C 0.14 4.66 5.38 86.38 0.46 5.12 16 15 C 0.07 2.67 2.86 30.69 0.09 2.76 16 16 H 0.06 2.25 8.14 -2.38 -0.02 2.24 16 17 C 0.16 7.66 4.67 86.35 0.40 8.06 16 18 N -0.61 -30.27 3.04 -697.52 -2.12 -32.39 16 19 C -0.27 -14.25 9.64 84.03 0.81 -13.44 16 20 H 0.07 3.67 7.85 -2.91 -0.02 3.64 16 21 C -0.05 -2.60 5.07 84.86 0.43 -2.17 16 22 N -0.94 -54.41 11.07 21.65 0.24 -54.17 16 23 Si 0.97 43.74 29.57 68.60 2.03 45.76 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.30 -13.53 7.11 99.48 0.71 -12.82 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 27 C 0.10 4.08 6.73 86.35 0.58 4.66 16 28 C 0.06 1.78 6.98 72.08 0.50 2.29 16 29 O -0.39 -13.38 10.14 -148.98 -1.51 -14.89 16 30 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.05 1.03 5.99 -2.39 -0.01 1.01 16 33 H 0.04 0.93 5.87 -2.39 -0.01 0.92 16 34 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.06 1.22 7.30 -2.38 -0.02 1.20 16 36 H 0.04 1.00 6.70 -2.39 -0.02 0.98 16 37 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.06 1.07 7.70 -2.38 -0.02 1.05 16 39 H 0.41 7.32 7.82 -92.71 -0.72 6.59 16 40 H 0.41 2.37 8.84 -92.71 -0.82 1.55 16 41 H 0.42 3.61 8.93 -92.71 -0.83 2.78 16 42 H 0.41 9.25 7.50 -92.71 -0.70 8.56 16 43 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 45 H 0.07 3.50 6.27 -2.39 -0.01 3.49 16 46 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 47 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 48 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.07 2.68 7.96 -2.38 -0.02 2.66 16 50 H 0.12 2.92 8.14 -2.38 -0.02 2.90 16 51 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -70.77 395.62 -2.50 -73.27 By element: Atomic # 1 Polarization: 33.41 SS G_CDS: -2.09 Total: 31.32 kcal Atomic # 6 Polarization: 26.13 SS G_CDS: 6.71 Total: 32.84 kcal Atomic # 7 Polarization: -126.21 SS G_CDS: -7.54 Total: -133.76 kcal Atomic # 8 Polarization: -47.83 SS G_CDS: -1.61 Total: -49.44 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -70.77 -2.50 -73.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698791321.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.338 kcal (2) G-P(sol) polarization free energy of solvation -70.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds