Wall clock time and date at job start Wed Apr 1 2020 02:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47404 * 322.10075 * 3 2 1 5 5 C 1.34776 * 120.00115 * 90.00239 * 4 3 2 6 6 O 1.21278 * 120.00288 * 180.02562 * 5 4 3 7 7 C 1.50700 * 119.99933 * 359.97438 * 5 4 3 8 8 H 1.09001 * 115.48378 * 325.31696 * 7 5 4 9 9 C 1.53004 * 117.42556 * 110.62002 * 7 5 4 10 10 H 1.08992 * 119.98790 * 355.25890 * 9 7 5 11 11 C 1.52998 * 117.42963 * 180.02562 * 7 5 4 12 12 H 1.08996 * 119.98810 * 5.86644 * 11 7 5 13 13 C 1.55930 * 117.16937 * 160.66548 * 11 7 5 14 14 H 1.09004 * 115.92296 * 263.04802 * 13 11 7 15 15 C 1.55929 * 104.49507 * 133.36725 * 13 11 7 16 16 C 1.54582 * 104.64140 * 289.72324 * 15 13 11 17 17 C 1.55929 * 104.64590 * 359.97438 * 16 15 13 18 18 H 1.08998 * 115.92383 * 199.97231 * 17 16 15 19 19 C 1.56943 * 100.65471 * 29.30871 * 13 11 7 20 20 C 1.46502 * 120.00119 * 270.00235 * 4 3 2 21 21 C 1.53041 * 109.45829 * 60.06362 * 20 4 3 22 22 C 1.53192 * 109.31114 * 178.61483 * 21 20 4 23 23 N 1.46931 * 108.77606 * 54.63632 * 22 21 20 24 24 C 1.36937 * 120.62962 * 126.36888 * 23 22 21 25 25 H 1.07999 * 120.00107 * 331.85784 * 24 23 22 26 26 C 1.38809 * 119.99936 * 151.86358 * 24 23 22 27 27 N 1.31618 * 120.00117 * 343.06882 * 26 24 23 28 28 Si 1.86807 * 119.99894 * 163.06382 * 26 24 23 29 29 H 1.48497 * 109.46854 * 90.00149 * 28 26 24 30 30 H 1.48502 * 109.47057 * 210.00050 * 28 26 24 31 31 H 1.48498 * 109.47111 * 329.99991 * 28 26 24 32 32 C 1.46928 * 118.73822 * 306.39704 * 23 22 21 33 33 C 1.53048 * 109.45788 * 300.00071 * 20 4 3 34 34 H 4.40644 * 5.51482 * 180.02562 * 4 1 2 35 35 H 1.09003 * 109.46931 * 202.09879 * 3 2 1 36 36 H 1.08998 * 109.46861 * 82.10095 * 3 2 1 37 37 H 1.08998 * 110.40834 * 48.51062 * 15 13 11 38 38 H 1.08996 * 110.40379 * 170.93290 * 15 13 11 39 39 H 1.09003 * 110.40232 * 241.20932 * 16 15 13 40 40 H 1.09000 * 110.40763 * 118.78711 * 16 15 13 41 41 H 1.08994 * 112.02958 * 170.30117 * 19 13 11 42 42 H 1.09004 * 112.02543 * 296.75180 * 19 13 11 43 43 H 1.08991 * 109.46031 * 180.02562 * 20 4 3 44 44 H 1.09001 * 109.50309 * 298.56801 * 21 20 4 45 45 H 1.08996 * 109.49632 * 58.66591 * 21 20 4 46 46 H 1.09000 * 109.59212 * 294.85199 * 22 21 20 47 47 H 1.08994 * 109.70473 * 174.49492 * 22 21 20 48 48 H 0.97001 * 120.00002 * 179.97438 * 27 26 24 49 49 H 1.09002 * 109.58414 * 293.81346 * 32 23 22 50 50 H 1.08995 * 109.70257 * 173.46341 * 32 23 22 51 51 H 1.09000 * 109.49576 * 301.33552 * 33 20 4 52 52 H 1.08996 * 109.49817 * 61.40153 * 33 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.0890 0.8484 5 6 3.3602 -2.3072 0.3177 6 8 3.7644 -3.2094 1.0201 7 6 3.1086 -2.5486 -1.1484 8 1 2.2684 -2.0017 -1.5764 9 6 4.3274 -2.7813 -2.0437 10 1 5.3319 -2.6919 -1.6303 11 6 3.3833 -3.9534 -1.6888 12 1 3.6543 -4.7570 -1.0041 13 6 2.7100 -4.3405 -3.0409 14 1 1.7794 -4.9032 -2.9659 15 6 3.8544 -4.9949 -3.8735 16 6 4.7986 -3.8235 -4.2283 17 6 4.1354 -2.5715 -3.5772 18 1 4.4434 -1.6061 -3.9786 19 6 2.6164 -2.9343 -3.7315 20 6 3.3790 -0.8545 2.2738 21 6 2.0769 -0.4174 2.9488 22 6 2.3280 -0.2066 4.4453 23 7 3.4400 0.7396 4.6095 24 6 3.2943 1.8599 5.3833 25 1 2.3198 2.3094 5.5046 26 6 4.3991 2.4180 6.0116 27 7 5.5030 1.7146 6.1490 28 14 4.3190 4.1673 6.6621 29 1 3.8389 4.1514 8.0672 30 1 5.6716 4.7779 6.6081 31 1 3.3830 4.9632 5.8281 32 6 4.7112 0.4611 3.9273 33 6 4.4333 0.2428 2.4368 34 1 -1.0499 -0.0004 0.0001 35 1 3.0089 0.9530 0.3866 36 1 3.0094 -0.1404 -1.0179 37 1 4.3807 -5.7397 -3.2765 38 1 3.4535 -5.4478 -4.7802 39 1 4.8618 -3.7005 -5.3095 40 1 5.7890 -3.9922 -3.8056 41 1 2.3191 -3.0114 -4.7773 42 1 1.9732 -2.2494 -3.1789 43 1 3.7370 -1.7739 2.7369 44 1 1.7311 0.5153 2.5030 45 1 1.3194 -1.1892 2.8122 46 1 2.5862 -1.1581 4.9101 47 1 1.4315 0.1980 4.9149 48 1 6.2752 2.1048 6.5878 49 1 5.1637 -0.4360 4.3499 50 1 5.3884 1.3058 4.0529 51 1 5.3530 -0.0591 1.9356 52 1 4.0657 1.1691 1.9953 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699789968.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:40 Heat of formation + Delta-G solvation = 85.777873 kcal Electronic energy + Delta-G solvation = -30793.734515 eV Core-core repulsion = 26954.489305 eV Total energy + Delta-G solvation = -3839.245210 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.62757 -39.67447 -37.40518 -35.62422 -33.79812 -33.00085 -32.10175 -30.18025 -29.62419 -29.23718 -28.34777 -27.12289 -25.69477 -24.14655 -22.19135 -21.97122 -21.83835 -20.18897 -19.35542 -18.92095 -18.83917 -18.01405 -17.30416 -16.74196 -16.35779 -16.03660 -15.65997 -15.08594 -14.81164 -14.34395 -13.80776 -13.75773 -13.52206 -13.29684 -13.21529 -13.01189 -12.77367 -12.72127 -12.45447 -12.34941 -11.81352 -11.73918 -11.56312 -11.52621 -11.42911 -11.21058 -11.14222 -10.95407 -10.71797 -10.59788 -10.53648 -10.39483 -10.17484 -10.15530 -10.08789 -10.02142 -9.82806 -9.77312 -9.66873 -9.42370 -8.60050 -8.38277 -6.67616 -5.78836 -3.21209 2.41692 2.59288 2.82302 3.29712 3.37434 3.44315 3.46458 3.64031 4.04439 4.17609 4.21740 4.37213 4.49635 4.71182 4.76059 4.79722 4.86069 4.98618 5.02235 5.10577 5.16496 5.18767 5.28737 5.32520 5.40443 5.48168 5.48824 5.51490 5.62500 5.66675 5.66885 5.77491 5.82237 5.84694 5.89757 5.90683 5.95673 6.03812 6.09127 6.11499 6.23574 6.34346 6.52025 6.57266 6.63274 6.78627 6.90124 6.98241 7.33558 7.50874 7.59750 7.66133 7.79711 8.30033 8.45056 9.21189 9.84425 10.41668 11.29991 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021080 B = 0.002569 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.961044 B =10897.402397 C =11277.769341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.200 4.200 3 C 0.215 3.785 4 N -0.597 5.597 5 C 0.546 3.454 6 O -0.538 6.538 7 C -0.167 4.167 8 H 0.124 0.876 9 C -0.134 4.134 10 H 0.117 0.883 11 C -0.128 4.128 12 H 0.123 0.877 13 C -0.074 4.074 14 H 0.100 0.900 15 C -0.116 4.116 16 C -0.117 4.117 17 C -0.072 4.072 18 H 0.102 0.898 19 C -0.138 4.138 20 C 0.145 3.855 21 C -0.135 4.135 22 C 0.148 3.852 23 N -0.592 5.592 24 C -0.252 4.252 25 H 0.065 0.935 26 C 0.002 3.998 27 N -0.902 5.902 28 Si 0.901 3.099 29 H -0.287 1.287 30 H -0.290 1.290 31 H -0.280 1.280 32 C 0.175 3.825 33 C -0.146 4.146 34 H 0.215 0.785 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.096 0.904 44 H 0.061 0.939 45 H 0.050 0.950 46 H 0.019 0.981 47 H 0.056 0.944 48 H 0.254 0.746 49 H 0.020 0.980 50 H 0.091 0.909 51 H 0.052 0.948 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.486 -8.657 -23.384 25.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.201 4.201 3 C 0.092 3.908 4 N -0.328 5.328 5 C 0.334 3.666 6 O -0.415 6.415 7 C -0.188 4.188 8 H 0.142 0.858 9 C -0.153 4.153 10 H 0.135 0.865 11 C -0.147 4.147 12 H 0.141 0.859 13 C -0.092 4.092 14 H 0.119 0.881 15 C -0.154 4.154 16 C -0.155 4.155 17 C -0.090 4.090 18 H 0.120 0.880 19 C -0.176 4.176 20 C 0.044 3.956 21 C -0.175 4.175 22 C 0.021 3.979 23 N -0.314 5.314 24 C -0.382 4.382 25 H 0.083 0.917 26 C -0.196 4.196 27 N -0.547 5.547 28 Si 0.731 3.269 29 H -0.214 1.214 30 H -0.216 1.216 31 H -0.205 1.205 32 C 0.048 3.952 33 C -0.186 4.186 34 H 0.232 0.768 35 H 0.126 0.874 36 H 0.117 0.883 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.114 0.886 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.037 0.963 47 H 0.075 0.925 48 H 0.064 0.936 49 H 0.038 0.962 50 H 0.109 0.891 51 H 0.071 0.929 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.054 -9.102 -22.893 25.149 hybrid contribution -0.291 1.017 0.499 1.170 sum -5.345 -8.085 -22.394 24.402 Atomic orbital electron populations 1.24882 0.95862 0.99699 1.00475 1.23590 0.94926 1.01053 1.00550 1.18411 0.83653 0.92670 0.96018 1.48157 1.64599 1.09574 1.10434 1.19605 0.76791 0.82006 0.88191 1.90684 1.45933 1.42609 1.62255 1.22402 1.01913 1.02079 0.92402 0.85835 1.23596 0.94617 1.03419 0.93646 0.86507 1.23577 1.02278 0.90922 0.97878 0.85891 1.23183 0.97470 0.96239 0.92340 0.88147 1.22512 0.96090 0.97567 0.99222 1.22528 0.98880 0.94134 0.99916 1.23173 0.95480 0.98189 0.92188 0.87992 1.23759 0.96317 0.96829 1.00654 1.21250 0.96341 1.00258 0.77774 1.22351 0.95749 1.00318 0.99055 1.20872 0.92324 0.93200 0.91530 1.44079 1.09377 1.23451 1.54533 1.19159 0.94780 1.01502 1.22724 0.91728 1.25051 0.97448 0.98907 0.98221 1.70029 1.03913 1.35128 1.45599 0.86318 0.76877 0.84877 0.78822 1.21394 1.21557 1.20518 1.20741 0.88734 1.00538 0.85161 1.22584 0.96869 0.97090 1.02050 0.76798 0.87446 0.88281 0.91442 0.91644 0.91595 0.91451 0.90782 0.90641 0.88570 0.91989 0.93174 0.96304 0.92537 0.93599 0.96160 0.89102 0.92902 0.92404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.17 19.25 29.55 0.57 -1.60 16 2 C -0.20 -2.52 11.73 -37.12 -0.44 -2.95 16 3 C 0.22 2.64 5.01 -6.83 -0.03 2.60 16 4 N -0.60 -9.05 2.37 -169.37 -0.40 -9.45 16 5 C 0.55 8.52 7.45 -10.99 -0.08 8.44 16 6 O -0.54 -10.43 15.68 5.56 0.09 -10.34 16 7 C -0.17 -1.94 3.99 -91.77 -0.37 -2.30 16 8 H 0.12 1.29 4.85 -51.93 -0.25 1.04 16 9 C -0.13 -1.34 6.20 -88.18 -0.55 -1.89 16 10 H 0.12 1.28 8.14 -51.93 -0.42 0.85 16 11 C -0.13 -1.37 5.93 -88.20 -0.52 -1.90 16 12 H 0.12 1.54 7.83 -51.93 -0.41 1.13 16 13 C -0.07 -0.60 5.18 -85.35 -0.44 -1.04 16 14 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 15 C -0.12 -0.83 6.21 -24.33 -0.15 -0.98 16 16 C -0.12 -0.81 6.21 -24.33 -0.15 -0.97 16 17 C -0.07 -0.54 5.18 -85.34 -0.44 -0.99 16 18 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 19 C -0.14 -1.01 6.23 -22.47 -0.14 -1.15 16 20 C 0.15 2.64 2.48 -67.88 -0.17 2.47 16 21 C -0.13 -2.48 4.73 -26.61 -0.13 -2.60 16 22 C 0.15 3.20 6.52 -3.71 -0.02 3.17 16 23 N -0.59 -14.88 2.99 -172.32 -0.52 -15.39 16 24 C -0.25 -6.90 9.58 -15.06 -0.14 -7.05 16 25 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 26 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 27 N -0.90 -26.22 11.19 55.49 0.62 -25.60 16 28 Si 0.90 21.60 29.59 -169.99 -5.03 16.57 16 29 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 30 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 31 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 32 C 0.17 4.18 5.30 -3.71 -0.02 4.16 16 33 C -0.15 -2.79 5.31 -26.61 -0.14 -2.93 16 34 H 0.22 1.73 7.80 -54.10 -0.42 1.30 16 35 H 0.11 1.34 6.45 -51.93 -0.34 1.00 16 36 H 0.10 0.96 6.65 -51.93 -0.35 0.61 16 37 H 0.07 0.51 8.04 -51.93 -0.42 0.09 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.49 8.04 -51.93 -0.42 0.08 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.58 5.92 -51.93 -0.31 0.28 16 43 H 0.10 1.99 6.90 -51.93 -0.36 1.63 16 44 H 0.06 1.15 7.02 -51.93 -0.36 0.78 16 45 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 48 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 49 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.09 2.41 6.06 -51.93 -0.31 2.09 16 51 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 52 H 0.06 1.07 6.72 -51.93 -0.35 0.72 16 LS Contribution 398.39 15.07 6.00 6.00 Total: -1.00 -31.62 398.39 -11.17 -42.79 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -8.48 Total: 2.95 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -3.45 Total: -7.53 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: -0.30 Total: -50.44 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.34 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.62 -11.17 -42.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699789968.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.565 kcal (2) G-P(sol) polarization free energy of solvation -31.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds