Wall clock time and date at job start Wed Apr 1 2020 02:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47404 * 322.10075 * 3 2 1 5 5 C 1.34776 * 120.00115 * 90.00239 * 4 3 2 6 6 O 1.21278 * 120.00288 * 180.02562 * 5 4 3 7 7 C 1.50700 * 119.99933 * 359.97438 * 5 4 3 8 8 H 1.09001 * 115.48378 * 325.31696 * 7 5 4 9 9 C 1.53004 * 117.42556 * 110.62002 * 7 5 4 10 10 H 1.08992 * 119.98790 * 355.25890 * 9 7 5 11 11 C 1.52998 * 117.42963 * 180.02562 * 7 5 4 12 12 H 1.08996 * 119.98810 * 5.86644 * 11 7 5 13 13 C 1.55930 * 117.16937 * 160.66548 * 11 7 5 14 14 H 1.09004 * 115.92296 * 263.04802 * 13 11 7 15 15 C 1.55929 * 104.49507 * 133.36725 * 13 11 7 16 16 C 1.54582 * 104.64140 * 289.72324 * 15 13 11 17 17 C 1.55929 * 104.64590 * 359.97438 * 16 15 13 18 18 H 1.08998 * 115.92383 * 199.97231 * 17 16 15 19 19 C 1.56943 * 100.65471 * 29.30871 * 13 11 7 20 20 C 1.46502 * 120.00119 * 270.00235 * 4 3 2 21 21 C 1.53041 * 109.45829 * 60.06362 * 20 4 3 22 22 C 1.53192 * 109.31114 * 178.61483 * 21 20 4 23 23 N 1.46931 * 108.77606 * 54.63632 * 22 21 20 24 24 C 1.36937 * 120.62962 * 126.36888 * 23 22 21 25 25 H 1.07999 * 120.00107 * 331.85784 * 24 23 22 26 26 C 1.38809 * 119.99936 * 151.86358 * 24 23 22 27 27 N 1.31618 * 120.00117 * 343.06882 * 26 24 23 28 28 Si 1.86807 * 119.99894 * 163.06382 * 26 24 23 29 29 H 1.48497 * 109.46854 * 90.00149 * 28 26 24 30 30 H 1.48502 * 109.47057 * 210.00050 * 28 26 24 31 31 H 1.48498 * 109.47111 * 329.99991 * 28 26 24 32 32 C 1.46928 * 118.73822 * 306.39704 * 23 22 21 33 33 C 1.53048 * 109.45788 * 300.00071 * 20 4 3 34 34 H 4.40644 * 5.51482 * 180.02562 * 4 1 2 35 35 H 1.09003 * 109.46931 * 202.09879 * 3 2 1 36 36 H 1.08998 * 109.46861 * 82.10095 * 3 2 1 37 37 H 1.08998 * 110.40834 * 48.51062 * 15 13 11 38 38 H 1.08996 * 110.40379 * 170.93290 * 15 13 11 39 39 H 1.09003 * 110.40232 * 241.20932 * 16 15 13 40 40 H 1.09000 * 110.40763 * 118.78711 * 16 15 13 41 41 H 1.08994 * 112.02958 * 170.30117 * 19 13 11 42 42 H 1.09004 * 112.02543 * 296.75180 * 19 13 11 43 43 H 1.08991 * 109.46031 * 180.02562 * 20 4 3 44 44 H 1.09001 * 109.50309 * 298.56801 * 21 20 4 45 45 H 1.08996 * 109.49632 * 58.66591 * 21 20 4 46 46 H 1.09000 * 109.59212 * 294.85199 * 22 21 20 47 47 H 1.08994 * 109.70473 * 174.49492 * 22 21 20 48 48 H 0.97001 * 120.00002 * 179.97438 * 27 26 24 49 49 H 1.09002 * 109.58414 * 293.81346 * 32 23 22 50 50 H 1.08995 * 109.70257 * 173.46341 * 32 23 22 51 51 H 1.09000 * 109.49576 * 301.33552 * 33 20 4 52 52 H 1.08996 * 109.49817 * 61.40153 * 33 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.0890 0.8484 5 6 3.3602 -2.3072 0.3177 6 8 3.7644 -3.2094 1.0201 7 6 3.1086 -2.5486 -1.1484 8 1 2.2684 -2.0017 -1.5764 9 6 4.3274 -2.7813 -2.0437 10 1 5.3319 -2.6919 -1.6303 11 6 3.3833 -3.9534 -1.6888 12 1 3.6543 -4.7570 -1.0041 13 6 2.7100 -4.3405 -3.0409 14 1 1.7794 -4.9032 -2.9659 15 6 3.8544 -4.9949 -3.8735 16 6 4.7986 -3.8235 -4.2283 17 6 4.1354 -2.5715 -3.5772 18 1 4.4434 -1.6061 -3.9786 19 6 2.6164 -2.9343 -3.7315 20 6 3.3790 -0.8545 2.2738 21 6 2.0769 -0.4174 2.9488 22 6 2.3280 -0.2066 4.4453 23 7 3.4400 0.7396 4.6095 24 6 3.2943 1.8599 5.3833 25 1 2.3198 2.3094 5.5046 26 6 4.3991 2.4180 6.0116 27 7 5.5030 1.7146 6.1490 28 14 4.3190 4.1673 6.6621 29 1 3.8389 4.1514 8.0672 30 1 5.6716 4.7779 6.6081 31 1 3.3830 4.9632 5.8281 32 6 4.7112 0.4611 3.9273 33 6 4.4333 0.2428 2.4368 34 1 -1.0499 -0.0004 0.0001 35 1 3.0089 0.9530 0.3866 36 1 3.0094 -0.1404 -1.0179 37 1 4.3807 -5.7397 -3.2765 38 1 3.4535 -5.4478 -4.7802 39 1 4.8618 -3.7005 -5.3095 40 1 5.7890 -3.9922 -3.8056 41 1 2.3191 -3.0114 -4.7773 42 1 1.9732 -2.2494 -3.1789 43 1 3.7370 -1.7739 2.7369 44 1 1.7311 0.5153 2.5030 45 1 1.3194 -1.1892 2.8122 46 1 2.5862 -1.1581 4.9101 47 1 1.4315 0.1980 4.9149 48 1 6.2752 2.1048 6.5878 49 1 5.1637 -0.4360 4.3499 50 1 5.3884 1.3058 4.0529 51 1 5.3530 -0.0591 1.9356 52 1 4.0657 1.1691 1.9953 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699789968.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:39 Heat of formation + Delta-G solvation = 70.678940 kcal Electronic energy + Delta-G solvation = -30794.389254 eV Core-core repulsion = 26954.489305 eV Total energy + Delta-G solvation = -3839.899949 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.44633 -40.89538 -38.98545 -37.05654 -34.88414 -34.27005 -33.50295 -31.88542 -31.42855 -29.85608 -28.93730 -28.22104 -27.31180 -25.54758 -23.93806 -23.42796 -22.59473 -21.26361 -20.84203 -19.88050 -19.55851 -19.13997 -18.57978 -18.33689 -17.50880 -16.93879 -16.72845 -16.49240 -16.08574 -15.74958 -15.42826 -15.25973 -14.86670 -14.70348 -14.37397 -14.29869 -14.15409 -13.86870 -13.70058 -13.30977 -13.20776 -13.04751 -12.70621 -12.58290 -12.44330 -12.42123 -12.21426 -12.15949 -12.06412 -12.01797 -11.96999 -11.80221 -11.58222 -11.42382 -11.35569 -11.22165 -11.11965 -10.87504 -10.68052 -10.58840 -10.58183 -9.85512 -8.73939 -7.89462 -5.35881 1.30264 1.46577 1.48237 1.49845 1.58582 1.93127 2.27247 2.50462 2.73783 3.21666 3.26959 3.49766 3.53041 3.58145 3.60999 3.73159 3.93729 3.95795 3.97408 4.05999 4.15840 4.19617 4.27438 4.28851 4.40742 4.45997 4.46689 4.50910 4.58821 4.59816 4.70543 4.74270 4.79840 4.87878 4.96871 4.99013 5.02647 5.07688 5.08093 5.12388 5.20276 5.23338 5.24562 5.24701 5.26733 5.39057 5.41385 5.50746 5.52355 5.61248 5.66592 6.31031 6.36406 6.71442 7.06425 7.11521 7.80746 8.34621 9.17919 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021080 B = 0.002569 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.961044 B =10897.402397 C =11277.769341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.235 4.235 3 C 0.214 3.786 4 N -0.594 5.594 5 C 0.540 3.460 6 O -0.586 6.586 7 C -0.166 4.166 8 H 0.143 0.857 9 C -0.126 4.126 10 H 0.102 0.898 11 C -0.138 4.138 12 H 0.095 0.905 13 C -0.071 4.071 14 H 0.107 0.893 15 C -0.116 4.116 16 C -0.117 4.117 17 C -0.064 4.064 18 H 0.120 0.880 19 C -0.132 4.132 20 C 0.155 3.845 21 C -0.114 4.114 22 C 0.144 3.856 23 N -0.607 5.607 24 C -0.263 4.263 25 H 0.069 0.931 26 C -0.050 4.050 27 N -0.937 5.937 28 Si 0.970 3.030 29 H -0.286 1.286 30 H -0.292 1.292 31 H -0.267 1.267 32 C 0.183 3.817 33 C -0.128 4.128 34 H 0.244 0.756 35 H 0.106 0.894 36 H 0.128 0.872 37 H 0.055 0.945 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.058 0.942 41 H 0.093 0.907 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.060 0.940 46 H 0.006 0.994 47 H 0.062 0.938 48 H 0.251 0.749 49 H -0.011 1.011 50 H 0.063 0.937 51 H 0.062 0.938 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.419 -7.502 -26.722 28.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.237 4.237 3 C 0.092 3.908 4 N -0.323 5.323 5 C 0.330 3.670 6 O -0.467 6.467 7 C -0.186 4.186 8 H 0.161 0.839 9 C -0.145 4.145 10 H 0.120 0.880 11 C -0.157 4.157 12 H 0.113 0.887 13 C -0.089 4.089 14 H 0.125 0.875 15 C -0.154 4.154 16 C -0.154 4.154 17 C -0.082 4.082 18 H 0.138 0.862 19 C -0.169 4.169 20 C 0.052 3.948 21 C -0.154 4.154 22 C 0.018 3.982 23 N -0.330 5.330 24 C -0.393 4.393 25 H 0.087 0.913 26 C -0.246 4.246 27 N -0.583 5.583 28 Si 0.797 3.203 29 H -0.213 1.213 30 H -0.218 1.218 31 H -0.192 1.192 32 C 0.056 3.944 33 C -0.167 4.167 34 H 0.260 0.740 35 H 0.124 0.876 36 H 0.146 0.854 37 H 0.074 0.926 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.077 0.923 41 H 0.112 0.888 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.079 0.921 46 H 0.023 0.977 47 H 0.080 0.920 48 H 0.060 0.940 49 H 0.007 0.993 50 H 0.081 0.919 51 H 0.080 0.920 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.023 -7.938 -26.271 28.328 hybrid contribution 0.285 0.565 1.589 1.711 sum -6.738 -7.373 -24.681 26.626 Atomic orbital electron populations 1.25663 0.96699 0.98000 0.98871 1.23704 0.95309 1.02582 1.02061 1.18614 0.84090 0.91250 0.96800 1.48069 1.64435 1.10554 1.09262 1.20343 0.75593 0.81305 0.89745 1.90662 1.48110 1.44125 1.63753 1.22292 1.03448 1.03209 0.89691 0.83918 1.23700 0.93251 1.02272 0.95248 0.87987 1.23629 1.03320 0.90043 0.98715 0.88678 1.23249 0.97823 0.97354 0.90484 0.87474 1.22531 0.95775 0.97508 0.99561 1.22550 0.98286 0.93618 1.00970 1.23265 0.96041 0.99307 0.89627 0.86224 1.23758 0.95825 0.95700 1.01618 1.20828 0.95788 0.98248 0.79972 1.22092 0.95959 1.00878 0.96434 1.20983 0.91416 0.91864 0.93907 1.44318 1.10231 1.23787 1.54708 1.19508 0.95030 1.02184 1.22584 0.91292 1.25852 0.97156 1.02649 0.98917 1.70198 1.04535 1.36753 1.46795 0.85249 0.76731 0.80158 0.78123 1.21265 1.21827 1.19203 1.20506 0.88026 0.97816 0.88039 1.22307 0.97848 0.98122 0.98464 0.74008 0.87565 0.85398 0.92613 0.89883 0.89671 0.92298 0.88804 0.90732 0.91681 0.91274 0.92119 0.97651 0.91967 0.94021 0.99302 0.91861 0.91954 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.38 19.25 74.32 1.43 -1.95 16 2 C -0.24 -5.29 11.73 31.13 0.37 -4.93 16 3 C 0.21 4.80 5.01 84.57 0.42 5.23 16 4 N -0.59 -17.71 2.37 -808.16 -1.91 -19.62 16 5 C 0.54 16.99 7.45 87.66 0.65 17.64 16 6 O -0.59 -23.85 15.68 -3.02 -0.05 -23.90 16 7 C -0.17 -3.67 3.99 -11.54 -0.05 -3.72 16 8 H 0.14 2.61 4.85 -2.39 -0.01 2.60 16 9 C -0.13 -2.38 6.20 -9.21 -0.06 -2.44 16 10 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 11 C -0.14 -2.92 5.93 -9.22 -0.05 -2.98 16 12 H 0.10 2.54 7.83 -2.39 -0.02 2.52 16 13 C -0.07 -1.00 5.18 -7.38 -0.04 -1.04 16 14 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 15 C -0.12 -1.41 6.21 32.15 0.20 -1.21 16 16 C -0.12 -1.31 6.21 32.15 0.20 -1.11 16 17 C -0.06 -0.78 5.18 -7.38 -0.04 -0.81 16 18 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 19 C -0.13 -1.45 6.23 33.35 0.21 -1.24 16 20 C 0.15 5.71 2.48 45.02 0.11 5.82 16 21 C -0.11 -4.14 4.73 30.67 0.15 -4.00 16 22 C 0.14 6.35 6.52 86.36 0.56 6.91 16 23 N -0.61 -31.26 2.99 -699.11 -2.09 -33.36 16 24 C -0.26 -14.56 9.58 84.03 0.81 -13.76 16 25 H 0.07 3.69 7.88 -2.91 -0.02 3.67 16 26 C -0.05 -2.83 4.92 84.86 0.42 -2.42 16 27 N -0.94 -56.20 11.19 21.65 0.24 -55.95 16 28 Si 0.97 44.78 29.59 68.60 2.03 46.81 16 29 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 30 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 31 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 32 C 0.18 9.12 5.30 86.36 0.46 9.58 16 33 C -0.13 -4.95 5.31 30.67 0.16 -4.79 16 34 H 0.24 2.91 7.80 -4.42 -0.03 2.88 16 35 H 0.11 2.42 6.45 -2.39 -0.02 2.40 16 36 H 0.13 2.10 6.65 -2.39 -0.02 2.08 16 37 H 0.06 0.80 8.04 -2.39 -0.02 0.78 16 38 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.06 0.77 8.04 -2.39 -0.02 0.75 16 41 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.07 0.86 5.92 -2.38 -0.01 0.85 16 43 H 0.06 2.84 6.90 -2.39 -0.02 2.82 16 44 H 0.07 2.45 7.02 -2.39 -0.02 2.43 16 45 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 47 H 0.06 2.62 7.93 -2.39 -0.02 2.60 16 48 H 0.25 14.53 8.31 -92.71 -0.77 13.75 16 49 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 50 H 0.06 3.50 6.06 -2.39 -0.01 3.49 16 51 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 52 H 0.07 2.58 6.72 -2.39 -0.02 2.57 16 Total: -1.00 -71.53 398.39 5.03 -66.51 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 0.90 Total: 20.73 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: 5.91 Total: -1.21 kcal Atomic # 7 Polarization: -105.17 SS G_CDS: -3.76 Total: -108.93 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.05 Total: -23.90 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -71.53 5.03 -66.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699789968.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.185 kcal (2) G-P(sol) polarization free energy of solvation -71.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds