Wall clock time and date at job start Wed Apr 1 2020 01:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47427 * 2 1 4 4 C 1.52993 * 109.47114 * 64.99796 * 3 2 1 5 5 C 1.53004 * 109.47179 * 185.37596 * 4 3 2 6 6 C 1.53000 * 109.46877 * 184.99789 * 3 2 1 7 7 N 1.46905 * 109.47345 * 64.61096 * 6 3 2 8 8 C 1.46898 * 111.00254 * 175.47681 * 7 6 3 9 9 C 1.52992 * 109.47101 * 180.02562 * 8 7 6 10 10 H 1.09004 * 110.64607 * 56.68958 * 9 8 7 11 11 C 1.54320 * 110.72117 * 293.54494 * 9 8 7 12 12 N 1.47022 * 107.27258 * 219.44680 * 11 9 8 13 13 C 1.34779 * 125.64857 * 178.97902 * 12 11 9 14 14 O 1.21282 * 120.00071 * 359.97438 * 13 12 11 15 15 C 1.50694 * 119.99954 * 179.97438 * 13 12 11 16 16 S 1.81004 * 109.47134 * 179.97438 * 15 13 12 17 17 C 1.76200 * 99.99990 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99996 * 359.97438 * 17 16 15 19 19 C 1.38797 * 120.00056 * 180.02562 * 17 16 15 20 20 N 1.31640 * 119.99870 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00219 * 179.97438 * 19 17 16 22 22 H 1.48490 * 109.47132 * 59.99627 * 21 19 17 23 23 H 1.48498 * 109.46879 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46727 * 299.99681 * 21 19 17 25 25 C 1.47422 * 108.70470 * 358.93936 * 12 11 9 26 26 C 1.54915 * 104.83082 * 24.12777 * 25 12 11 27 27 H 1.09004 * 111.00267 * 204.91516 * 26 25 12 28 28 C 1.52995 * 111.00004 * 81.06412 * 26 25 12 29 29 H 1.09002 * 109.46918 * 59.99877 * 1 2 3 30 30 H 1.09000 * 109.47257 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47182 * 300.00521 * 1 2 3 32 32 H 1.09002 * 109.47459 * 239.99561 * 2 1 3 33 33 H 1.09002 * 109.46918 * 120.00123 * 2 1 3 34 34 H 1.09000 * 109.46800 * 304.99591 * 3 2 1 35 35 H 1.08997 * 109.47324 * 305.37470 * 4 3 2 36 36 H 1.09000 * 109.47436 * 65.37566 * 4 3 2 37 37 H 1.09001 * 109.47022 * 54.12413 * 5 4 3 38 38 H 1.09006 * 109.47191 * 174.12663 * 5 4 3 39 39 H 1.09002 * 109.47022 * 294.12691 * 5 4 3 40 40 H 1.08995 * 109.47702 * 304.61025 * 6 3 2 41 41 H 1.09007 * 109.47064 * 184.60586 * 6 3 2 42 42 H 1.00907 * 110.99925 * 51.52192 * 7 6 3 43 43 H 1.09000 * 109.46788 * 59.99882 * 8 7 6 44 44 H 1.09002 * 109.46753 * 300.00009 * 8 7 6 45 45 H 1.08998 * 109.88351 * 338.86565 * 11 9 8 46 46 H 1.09001 * 109.88308 * 99.87122 * 11 9 8 47 47 H 1.08997 * 109.47596 * 299.99819 * 15 13 12 48 48 H 1.09000 * 109.47193 * 59.99925 * 15 13 12 49 49 H 0.96998 * 119.99784 * 180.02562 * 20 19 17 50 50 H 1.08996 * 110.37197 * 142.96886 * 25 12 11 51 51 H 1.09004 * 110.36941 * 265.18224 * 25 12 11 52 52 H 1.08997 * 109.47455 * 307.80631 * 28 26 25 53 53 H 1.09001 * 109.46922 * 67.80478 * 28 26 25 54 54 H 1.09005 * 109.46918 * 187.80129 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6353 2.1265 1.3073 5 6 2.0271 3.6045 1.2521 6 6 3.5649 1.4441 -0.1257 7 7 3.9494 0.8874 -1.4296 8 6 5.4022 0.9717 -1.6303 9 6 5.7632 0.3842 -2.9961 10 1 5.2193 0.8956 -3.7904 11 6 5.4809 -1.1325 -3.0299 12 7 6.5783 -1.7642 -3.7770 13 6 6.7107 -3.0848 -4.0117 14 8 5.8797 -3.8618 -3.5913 15 6 7.8913 -3.5960 -4.7965 16 16 7.7860 -5.3972 -4.9401 17 6 9.2462 -5.7156 -5.8735 18 1 9.8853 -4.8978 -6.1720 19 6 9.5744 -7.0173 -6.2262 20 7 8.7951 -8.0140 -5.8629 21 14 11.1220 -7.3547 -7.2164 22 1 12.3075 -6.8783 -6.4598 23 1 11.2450 -8.8143 -7.4605 24 1 11.0440 -6.6399 -8.5157 25 6 7.5095 -0.7139 -4.2277 26 6 7.2940 0.4583 -3.2381 27 1 7.5723 1.4093 -3.6924 28 6 8.0666 0.2273 -1.9379 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.6055 1.9814 -0.8419 35 1 0.5572 2.0413 1.4433 36 1 2.1459 1.6462 2.1420 37 1 1.6003 4.0604 0.3586 38 1 1.6468 4.1145 2.1373 39 1 3.1132 3.6916 1.2210 40 1 3.9958 0.8366 0.6700 41 1 3.9351 2.4661 -0.0436 42 1 3.4536 1.3463 -2.1792 43 1 5.9104 0.4097 -0.8468 44 1 5.7146 2.0152 -1.5900 45 1 5.4490 -1.5264 -2.0141 46 1 4.5314 -1.3218 -3.5306 47 1 7.8864 -3.1510 -5.7915 48 1 8.8137 -3.3261 -4.2823 49 1 9.0247 -8.9237 -6.1090 50 1 8.5381 -1.0707 -4.1751 51 1 7.2680 -0.4036 -5.2443 52 1 7.8229 -0.7580 -1.5406 53 1 9.1369 0.2845 -2.1362 54 1 7.7905 0.9909 -1.2107 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699957997.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:30 Heat of formation + Delta-G solvation = -85.293286 kcal Electronic energy + Delta-G solvation = -27806.302838 eV Core-core repulsion = 24095.083378 eV Total energy + Delta-G solvation = -3711.219461 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.208 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.27278 -39.36984 -38.61067 -35.85816 -34.59201 -33.68212 -32.58658 -31.63769 -30.49443 -28.30981 -27.71666 -27.59518 -25.80351 -24.10978 -23.44229 -23.07285 -20.95456 -20.70395 -20.19880 -19.52785 -18.07342 -17.49000 -16.88855 -16.79186 -16.38495 -16.22306 -16.04114 -15.67803 -15.53222 -15.23361 -14.98087 -14.64932 -14.47592 -14.35466 -14.18680 -14.00161 -13.70395 -13.58717 -13.25149 -13.21961 -13.14302 -12.90830 -12.86614 -12.82375 -12.70319 -12.64635 -12.56451 -12.31273 -11.97473 -11.81554 -11.69307 -11.58741 -11.47769 -11.39012 -11.29001 -11.13317 -11.03295 -10.93705 -10.29449 -9.65927 -9.21931 -8.69307 -8.34764 -6.14203 1.23788 1.43949 1.44815 1.55159 1.57174 2.12779 2.27112 2.98988 3.11004 3.27013 3.52395 3.58254 3.81868 3.89589 3.95272 3.97209 4.16123 4.19913 4.23922 4.31157 4.39985 4.42062 4.45232 4.51437 4.63030 4.63769 4.64287 4.66257 4.66985 4.76451 4.81185 4.83866 4.88457 4.92146 4.95680 5.00411 5.07939 5.15472 5.16420 5.19987 5.24940 5.29288 5.35058 5.37719 5.40475 5.44796 5.49438 5.55364 5.61754 6.14680 6.18985 6.42376 6.56093 7.05674 7.13348 8.74376 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.020220 B = 0.001908 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.425709 B =14672.682754 C =15737.840677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.078 4.078 4 C -0.120 4.120 5 C -0.152 4.152 6 C 0.068 3.932 7 N -0.701 5.701 8 C 0.076 3.924 9 C -0.078 4.078 10 H 0.102 0.898 11 C 0.126 3.874 12 N -0.616 5.616 13 C 0.542 3.458 14 O -0.571 6.571 15 C -0.118 4.118 16 S -0.153 6.153 17 C -0.547 4.547 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 1.000 3.000 22 H -0.261 1.261 23 H -0.278 1.278 24 H -0.261 1.261 25 C 0.091 3.909 26 C -0.086 4.086 27 H 0.126 0.874 28 C -0.145 4.145 29 H 0.054 0.946 30 H 0.045 0.955 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.042 0.958 42 H 0.346 0.654 43 H 0.066 0.934 44 H 0.055 0.945 45 H 0.048 0.952 46 H 0.050 0.950 47 H 0.106 0.894 48 H 0.105 0.895 49 H 0.271 0.729 50 H 0.080 0.920 51 H 0.087 0.913 52 H 0.030 0.970 53 H 0.066 0.934 54 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.700 30.677 10.886 33.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.097 4.097 4 C -0.158 4.158 5 C -0.209 4.209 6 C -0.061 4.061 7 N -0.333 5.333 8 C -0.053 4.053 9 C -0.098 4.098 10 H 0.120 0.880 11 C 0.004 3.996 12 N -0.350 5.350 13 C 0.330 3.670 14 O -0.450 6.450 15 C -0.269 4.269 16 S 0.075 5.925 17 C -0.695 4.695 18 H 0.101 0.899 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.822 3.178 22 H -0.186 1.186 23 H -0.203 1.203 24 H -0.185 1.185 25 C -0.031 4.031 26 C -0.105 4.105 27 H 0.144 0.856 28 C -0.202 4.202 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.164 0.836 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.124 0.876 48 H 0.123 0.877 49 H 0.080 0.920 50 H 0.099 0.901 51 H 0.105 0.895 52 H 0.050 0.950 53 H 0.085 0.915 54 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.937 28.637 11.734 32.504 hybrid contribution 1.569 0.667 -1.055 2.005 sum -8.368 29.304 10.679 32.292 Atomic orbital electron populations 1.21829 0.95899 1.01288 1.01958 1.21451 0.95515 0.96557 1.01612 1.21176 0.94361 0.95838 0.98341 1.21587 1.01554 0.95803 0.96810 1.21812 1.01459 0.95737 1.01874 1.22002 0.95416 0.97462 0.91240 1.60402 1.06210 1.62030 1.04622 1.21937 0.88322 0.99393 0.95684 1.22236 0.96399 0.92233 0.98894 0.87998 1.21858 0.88916 0.93633 0.95203 1.48490 1.26985 1.04684 1.54884 1.19807 0.86238 0.81333 0.79594 1.90683 1.44850 1.56356 1.53126 1.23290 0.99507 1.00946 1.03146 1.85618 1.35093 0.99557 1.72279 1.23158 1.09884 0.96430 1.39995 0.89872 1.26166 1.01445 0.94615 0.96947 1.70191 1.39197 1.00180 1.45209 0.84979 0.76990 0.77410 0.78458 1.18581 1.20329 1.18547 1.22766 0.93809 0.87284 0.99228 1.22382 0.93744 0.98594 0.95785 0.85627 1.21810 1.00374 1.01183 0.96862 0.92654 0.93583 0.92030 0.92280 0.93356 0.90961 0.91333 0.92373 0.92585 0.92520 0.92651 0.92392 0.93972 0.83579 0.91524 0.92661 0.93377 0.93134 0.87613 0.87704 0.91963 0.90119 0.89531 0.95027 0.91547 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.67 71.98 0.70 -1.42 16 2 C -0.11 -1.78 5.35 30.59 0.16 -1.62 16 3 C -0.08 -0.92 1.95 -10.80 -0.02 -0.94 16 4 C -0.12 -1.22 5.27 30.59 0.16 -1.06 16 5 C -0.15 -1.28 9.53 71.98 0.69 -0.60 16 6 C 0.07 0.83 4.96 86.30 0.43 1.26 16 7 N -0.70 -9.51 5.70 -513.89 -2.93 -12.44 16 8 C 0.08 0.95 3.94 86.30 0.34 1.29 16 9 C -0.08 -1.13 3.00 -9.61 -0.03 -1.16 16 10 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 11 C 0.13 3.22 5.96 86.73 0.52 3.74 16 12 N -0.62 -18.28 3.31 -811.80 -2.69 -20.97 16 13 C 0.54 22.42 7.87 87.65 0.69 23.11 16 14 O -0.57 -29.29 16.19 -3.04 -0.05 -29.34 16 15 C -0.12 -5.02 5.16 71.23 0.37 -4.66 16 16 S -0.15 -8.83 20.57 -56.49 -1.16 -9.99 16 17 C -0.55 -31.91 9.50 67.95 0.65 -31.26 16 18 H 0.08 4.48 7.80 -2.91 -0.02 4.45 16 19 C 0.01 0.75 5.49 84.86 0.47 1.22 16 20 N -0.91 -56.96 13.22 21.65 0.29 -56.67 16 21 Si 1.00 44.03 29.55 68.60 2.03 46.06 16 22 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 23 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 24 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 25 C 0.09 1.77 6.15 86.86 0.53 2.30 16 26 C -0.09 -1.10 3.54 -9.40 -0.03 -1.13 16 27 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 28 C -0.15 -2.06 8.13 71.98 0.59 -1.48 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.73 6.45 -2.39 -0.02 0.72 16 32 H 0.06 1.15 7.61 -2.39 -0.02 1.13 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.07 0.81 8.13 -2.39 -0.02 0.79 16 35 H 0.07 0.69 6.33 -2.39 -0.02 0.67 16 36 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 39 H 0.05 0.46 6.77 -2.39 -0.02 0.44 16 40 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.04 0.43 6.49 -2.38 -0.02 0.42 16 42 H 0.35 3.91 8.66 -89.69 -0.78 3.13 16 43 H 0.07 1.04 6.67 -2.39 -0.02 1.02 16 44 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.05 1.44 7.77 -2.39 -0.02 1.42 16 46 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.11 4.09 8.14 -2.40 -0.02 4.07 16 48 H 0.10 4.07 7.85 -2.40 -0.02 4.05 16 49 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 50 H 0.08 1.58 7.39 -2.39 -0.02 1.56 16 51 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 52 H 0.03 0.64 7.91 -2.39 -0.02 0.62 16 53 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 54 H 0.08 0.83 6.76 -2.38 -0.02 0.81 16 Total: -1.00 -78.10 430.23 1.76 -76.34 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.07 Total: 19.42 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: 6.20 Total: -12.41 kcal Atomic # 7 Polarization: -84.75 SS G_CDS: -5.33 Total: -90.08 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.05 Total: -29.34 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: -8.83 SS G_CDS: -1.16 Total: -9.99 kcal Total: -78.10 1.76 -76.34 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699957997.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.952 kcal (2) G-P(sol) polarization free energy of solvation -78.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds