Wall clock time and date at job start Wed Apr 1 2020 01:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46858 * 2 1 4 4 C 1.53005 * 109.46476 * 174.60497 * 3 2 1 5 5 C 1.52999 * 109.47419 * 294.44203 * 4 3 2 6 6 C 1.52995 * 109.47385 * 294.60297 * 3 2 1 7 7 N 1.46906 * 109.46887 * 65.65136 * 6 3 2 8 8 C 1.46900 * 111.00001 * 180.02562 * 7 6 3 9 9 C 1.52999 * 109.47281 * 180.02562 * 8 7 6 10 10 H 1.09007 * 110.88206 * 308.88072 * 9 8 7 11 11 C 1.55128 * 110.90613 * 72.97104 * 9 8 7 12 12 N 1.47430 * 104.71839 * 155.27475 * 11 9 8 13 13 C 1.34777 * 125.64227 * 155.81648 * 12 11 9 14 14 O 1.21274 * 120.00462 * 359.71943 * 13 12 11 15 15 C 1.50701 * 119.99514 * 179.71934 * 13 12 11 16 16 S 1.81000 * 109.47050 * 180.02562 * 15 13 12 17 17 C 1.76202 * 100.00071 * 179.97438 * 16 15 13 18 18 H 1.07994 * 119.99959 * 359.97438 * 17 16 15 19 19 C 1.38800 * 119.99688 * 180.02562 * 17 16 15 20 20 N 1.31628 * 120.00293 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99782 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47169 * 179.97438 * 21 19 17 23 23 H 1.48502 * 109.46857 * 299.99798 * 21 19 17 24 24 H 1.48497 * 109.47225 * 59.99295 * 21 19 17 25 25 C 1.47016 * 108.70330 * 335.55557 * 12 11 9 26 26 C 1.54327 * 107.27393 * 1.28791 * 25 12 11 27 27 H 1.08998 * 110.71285 * 263.82889 * 26 25 12 28 28 C 1.52997 * 110.72203 * 140.55722 * 26 25 12 29 29 H 1.09006 * 109.47117 * 307.69446 * 1 2 3 30 30 H 1.08995 * 109.47147 * 67.68890 * 1 2 3 31 31 H 1.08998 * 109.47281 * 187.69755 * 1 2 3 32 32 H 1.08992 * 109.46817 * 239.99789 * 2 1 3 33 33 H 1.08995 * 109.46619 * 119.99856 * 2 1 3 34 34 H 1.08997 * 109.47320 * 54.60832 * 3 2 1 35 35 H 1.08996 * 109.47177 * 54.44799 * 4 3 2 36 36 H 1.09003 * 109.46389 * 174.44233 * 4 3 2 37 37 H 1.08993 * 109.46885 * 67.81651 * 5 4 3 38 38 H 1.08999 * 109.47250 * 187.82155 * 5 4 3 39 39 H 1.09004 * 109.46766 * 307.82003 * 5 4 3 40 40 H 1.09000 * 109.47056 * 305.65309 * 6 3 2 41 41 H 1.08992 * 109.47267 * 185.65142 * 6 3 2 42 42 H 1.00898 * 111.00001 * 56.04730 * 7 6 3 43 43 H 1.09002 * 109.47187 * 59.99746 * 8 7 6 44 44 H 1.08997 * 109.47089 * 300.00179 * 8 7 6 45 45 H 1.08999 * 110.49741 * 36.43617 * 11 9 8 46 46 H 1.08995 * 110.34549 * 274.04069 * 11 9 8 47 47 H 1.08999 * 109.47421 * 60.00006 * 15 13 12 48 48 H 1.08998 * 109.47337 * 299.99939 * 15 13 12 49 49 H 0.97000 * 120.00333 * 359.97438 * 20 19 17 50 50 H 1.09010 * 109.88090 * 120.70216 * 25 12 11 51 51 H 1.09000 * 109.88148 * 241.70888 * 25 12 11 52 52 H 1.08997 * 109.47412 * 61.44772 * 28 26 25 53 53 H 1.08997 * 109.47264 * 181.45586 * 28 26 25 54 54 H 1.09004 * 109.46665 * 301.45350 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5640 1.4445 0.1356 5 6 3.9548 0.8898 1.5069 6 6 1.6438 2.1236 -1.3115 7 7 0.1811 2.2427 -1.3789 8 6 -0.2370 2.8930 -2.6280 9 6 -1.7629 2.9996 -2.6615 10 1 -2.2245 2.0343 -2.4530 11 6 -2.2638 4.0865 -1.6744 12 7 -3.5696 4.5085 -2.2130 13 6 -4.5696 5.0658 -1.5017 14 8 -4.4355 5.2534 -0.3111 15 6 -5.8544 5.4560 -2.1859 16 16 -6.9905 6.1726 -0.9728 17 6 -8.3663 6.5280 -2.0147 18 1 -8.3204 6.2945 -3.0681 19 6 -9.5086 7.1090 -1.4817 20 7 -9.5644 7.3940 -0.1978 21 14 -10.9675 7.4851 -2.5861 22 1 -12.0536 8.0982 -1.7800 23 1 -10.5497 8.4290 -3.6537 24 1 -11.4591 6.2268 -3.2026 25 6 -3.5980 4.2266 -3.6556 26 6 -2.2510 3.5676 -4.0203 27 1 -1.5498 4.3095 -4.4025 28 6 -2.4565 2.4414 -5.0354 29 1 -0.3634 0.6284 0.8132 30 1 -0.3633 0.3901 -0.9507 31 1 -0.3634 -1.0184 0.1376 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6000 1.9835 0.8377 35 1 3.9992 0.8216 -0.6458 36 1 3.9361 2.4643 0.0367 37 1 3.7063 -0.1704 1.5542 38 1 5.0263 1.0191 1.6593 39 1 3.4100 1.4257 2.2843 40 1 1.9989 1.5275 -2.1521 41 1 2.0916 3.1163 -1.3551 42 1 -0.1789 2.7362 -0.5759 43 1 0.1050 2.3020 -3.4776 44 1 0.1978 3.8911 -2.6812 45 1 -1.5726 4.9290 -1.6517 46 1 -2.3832 3.6657 -0.6761 47 1 -6.3102 4.5730 -2.6338 48 1 -5.6435 6.1900 -2.9636 49 1 -8.8073 7.1977 0.3759 50 1 -4.4178 3.5454 -3.8841 51 1 -3.7219 5.1553 -4.2125 52 1 -2.8831 2.8510 -5.9510 53 1 -1.4975 1.9740 -5.2587 54 1 -3.1355 1.6970 -4.6196 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699958007.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:35 Heat of formation + Delta-G solvation = -86.277040 kcal Electronic energy + Delta-G solvation = -27837.985606 eV Core-core repulsion = 24126.723486 eV Total energy + Delta-G solvation = -3711.262119 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.208 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.29788 -39.43956 -38.64081 -35.81536 -34.76706 -33.92967 -32.44482 -31.87057 -30.59663 -28.52860 -27.33885 -27.09527 -26.01387 -23.87691 -23.36084 -22.49735 -21.27850 -20.91220 -20.66406 -20.11759 -18.12750 -17.74892 -16.97294 -16.81406 -16.41787 -15.91900 -15.87270 -15.66705 -15.40474 -15.35441 -14.92534 -14.73685 -14.61803 -14.46777 -14.20528 -13.97771 -13.76491 -13.64859 -13.62327 -13.35988 -13.29607 -12.97101 -12.80292 -12.74474 -12.66607 -12.38328 -12.24435 -11.95985 -11.93777 -11.77551 -11.72935 -11.59182 -11.52955 -11.43897 -11.19115 -11.11378 -11.10972 -11.07488 -10.35758 -9.79244 -9.10682 -8.94424 -8.90910 -6.30340 1.11958 1.42474 1.50785 1.60164 1.80438 1.97661 2.32681 3.00765 3.03099 3.12138 3.42771 3.46584 3.76956 3.83580 3.88374 3.97994 4.06567 4.16904 4.18299 4.27051 4.32497 4.37192 4.42874 4.49052 4.58262 4.62146 4.63236 4.68860 4.70313 4.74144 4.77363 4.78921 4.84515 4.92311 5.03157 5.09566 5.11004 5.12484 5.15237 5.19827 5.21600 5.36040 5.36337 5.38248 5.46985 5.48941 5.60479 5.61910 5.87864 6.12288 6.12561 6.28335 6.39117 6.97998 7.04610 8.48877 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.019289 B = 0.001899 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.223905 B =14742.474598 C =15627.598566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.103 4.103 3 C -0.085 4.085 4 C -0.116 4.116 5 C -0.153 4.153 6 C 0.068 3.932 7 N -0.686 5.686 8 C 0.076 3.924 9 C -0.080 4.080 10 H 0.091 0.909 11 C 0.106 3.894 12 N -0.614 5.614 13 C 0.543 3.457 14 O -0.568 6.568 15 C -0.100 4.100 16 S -0.195 6.195 17 C -0.614 4.614 18 H 0.075 0.925 19 C -0.019 4.019 20 N -0.912 5.912 21 Si 1.137 2.863 22 H -0.279 1.279 23 H -0.262 1.262 24 H -0.263 1.263 25 C 0.092 3.908 26 C -0.084 4.084 27 H 0.101 0.899 28 C -0.137 4.137 29 H 0.032 0.968 30 H 0.098 0.902 31 H 0.029 0.971 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.047 0.953 40 H 0.078 0.922 41 H 0.030 0.970 42 H 0.338 0.662 43 H 0.093 0.907 44 H 0.036 0.964 45 H 0.067 0.933 46 H 0.060 0.940 47 H 0.107 0.893 48 H 0.107 0.893 49 H 0.260 0.740 50 H 0.075 0.925 51 H 0.077 0.923 52 H 0.067 0.933 53 H 0.076 0.924 54 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.123 -15.179 -11.023 33.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.141 4.141 3 C -0.104 4.104 4 C -0.154 4.154 5 C -0.210 4.210 6 C -0.061 4.061 7 N -0.317 5.317 8 C -0.053 4.053 9 C -0.099 4.099 10 H 0.109 0.891 11 C -0.017 4.017 12 N -0.348 5.348 13 C 0.331 3.669 14 O -0.447 6.447 15 C -0.251 4.251 16 S 0.032 5.968 17 C -0.762 4.762 18 H 0.093 0.907 19 C -0.222 4.222 20 N -0.547 5.547 21 Si 0.954 3.046 22 H -0.205 1.205 23 H -0.187 1.187 24 H -0.187 1.187 25 C -0.030 4.030 26 C -0.104 4.104 27 H 0.119 0.881 28 C -0.194 4.194 29 H 0.051 0.949 30 H 0.116 0.884 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.048 0.952 42 H 0.156 0.844 43 H 0.111 0.889 44 H 0.054 0.946 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.125 0.875 48 H 0.125 0.875 49 H 0.071 0.929 50 H 0.093 0.907 51 H 0.095 0.905 52 H 0.086 0.914 53 H 0.095 0.905 54 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 26.692 -14.887 -9.484 32.000 hybrid contribution 1.337 0.316 -0.430 1.439 sum 28.028 -14.571 -9.913 33.109 Atomic orbital electron populations 1.22076 0.95836 0.99342 1.04348 1.21420 0.96124 0.95501 1.01032 1.21247 0.95494 0.96656 0.97002 1.21506 0.94592 1.01366 0.97941 1.21802 1.01222 1.01148 0.96860 1.22001 0.87150 0.98753 0.98219 1.60816 1.10990 1.55208 1.04643 1.21874 0.92108 0.97641 0.93699 1.22447 0.96365 0.97570 0.93534 0.89118 1.22501 0.83175 0.97467 0.98508 1.48397 1.14815 1.60798 1.10839 1.19723 0.84174 0.76792 0.86184 1.90682 1.81686 1.55583 1.16715 1.23148 0.95299 1.04633 1.02022 1.85059 1.14279 1.80206 1.17256 1.24023 1.02857 1.51405 0.97870 0.90656 1.27880 1.03524 0.92196 0.98583 1.70918 1.33501 1.44637 1.05641 0.82718 0.71038 0.77835 0.72965 1.20461 1.18697 1.18729 1.22492 1.00282 1.01162 0.79050 1.22209 0.94426 0.98573 0.95150 0.88115 1.21734 1.02914 0.96787 0.98006 0.94855 0.88372 0.95180 0.92223 0.93019 0.92345 0.91348 0.91986 0.92557 0.92331 0.93351 0.90354 0.95164 0.84420 0.88875 0.94557 0.91431 0.92150 0.87522 0.87471 0.92928 0.90689 0.90496 0.91429 0.90535 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 8.94 71.98 0.64 -1.88 16 2 C -0.10 -1.34 5.28 30.60 0.16 -1.18 16 3 C -0.09 -0.99 2.12 -10.79 -0.02 -1.01 16 4 C -0.12 -1.15 5.40 30.60 0.17 -0.98 16 5 C -0.15 -1.58 9.49 71.98 0.68 -0.90 16 6 C 0.07 0.72 5.05 86.30 0.44 1.16 16 7 N -0.69 -8.36 3.04 -513.89 -1.56 -9.92 16 8 C 0.08 0.81 5.19 86.30 0.45 1.26 16 9 C -0.08 -1.14 2.71 -9.33 -0.03 -1.16 16 10 H 0.09 1.48 8.04 -2.38 -0.02 1.46 16 11 C 0.11 2.38 5.86 86.93 0.51 2.89 16 12 N -0.61 -17.34 3.32 -811.35 -2.70 -20.04 16 13 C 0.54 21.60 7.87 87.66 0.69 22.29 16 14 O -0.57 -27.73 16.12 -3.01 -0.05 -27.78 16 15 C -0.10 -4.18 5.35 71.24 0.38 -3.80 16 16 S -0.19 -11.04 19.60 -56.49 -1.11 -12.14 16 17 C -0.61 -35.96 9.50 67.95 0.65 -35.32 16 18 H 0.08 4.12 7.80 -2.91 -0.02 4.10 16 19 C -0.02 -1.10 5.49 84.86 0.47 -0.63 16 20 N -0.91 -58.61 13.67 21.65 0.30 -58.31 16 21 Si 1.14 49.53 29.92 68.60 2.05 51.58 16 22 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 23 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 24 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 25 C 0.09 1.79 6.08 86.73 0.53 2.31 16 26 C -0.08 -1.04 3.01 -9.61 -0.03 -1.07 16 27 H 0.10 1.00 8.04 -2.39 -0.02 0.99 16 28 C -0.14 -1.27 9.13 71.98 0.66 -0.61 16 29 H 0.03 0.59 8.13 -2.38 -0.02 0.57 16 30 H 0.10 1.60 5.68 -2.39 -0.01 1.58 16 31 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.05 0.69 6.52 -2.39 -0.02 0.67 16 34 H 0.06 0.82 8.12 -2.39 -0.02 0.80 16 35 H 0.07 0.60 8.14 -2.39 -0.02 0.59 16 36 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.06 0.58 6.85 -2.39 -0.02 0.57 16 38 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.05 0.56 8.12 -2.39 -0.02 0.54 16 40 H 0.08 0.76 8.14 -2.39 -0.02 0.75 16 41 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16 42 H 0.34 4.86 8.23 -89.70 -0.74 4.12 16 43 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.04 0.39 7.96 -2.39 -0.02 0.37 16 45 H 0.07 1.46 7.91 -2.39 -0.02 1.44 16 46 H 0.06 1.60 8.03 -2.39 -0.02 1.58 16 47 H 0.11 4.11 8.14 -2.40 -0.02 4.09 16 48 H 0.11 4.11 8.14 -2.40 -0.02 4.09 16 49 H 0.26 17.41 7.13 -92.71 -0.66 16.75 16 50 H 0.07 1.43 7.82 -2.38 -0.02 1.41 16 51 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 52 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 53 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 54 H 0.05 0.60 8.13 -2.39 -0.02 0.58 16 Total: -1.00 -76.78 431.79 3.48 -73.30 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.21 Total: 21.96 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: 6.34 Total: -18.64 kcal Atomic # 7 Polarization: -84.31 SS G_CDS: -3.96 Total: -88.27 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.05 Total: -27.78 kcal Atomic # 14 Polarization: 49.53 SS G_CDS: 2.05 Total: 51.58 kcal Atomic # 16 Polarization: -11.04 SS G_CDS: -1.11 Total: -12.14 kcal Total: -76.78 3.48 -73.30 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699958007.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.980 kcal (2) G-P(sol) polarization free energy of solvation -76.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds