Wall clock time and date at job start Wed Apr 1 2020 01:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47467 * 2 1 4 4 C 1.53000 * 109.46980 * 65.00004 * 3 2 1 5 5 C 1.53001 * 109.47299 * 57.28203 * 4 3 2 6 6 C 1.52999 * 109.47499 * 184.99879 * 3 2 1 7 7 N 1.46895 * 109.47507 * 175.29854 * 6 3 2 8 8 C 1.46904 * 110.99780 * 293.95474 * 7 6 3 9 9 C 1.46897 * 111.00374 * 170.00233 * 7 6 3 10 10 C 1.53007 * 109.46780 * 284.73630 * 9 7 6 11 11 H 1.08995 * 110.88709 * 58.75396 * 10 9 7 12 12 C 1.55159 * 111.00153 * 182.63338 * 10 9 7 13 13 C 1.54368 * 102.91840 * 153.54830 * 12 10 9 14 14 N 1.47020 * 107.28811 * 337.85954 * 13 12 10 15 15 C 1.34782 * 125.64545 * 178.94671 * 14 13 12 16 16 O 1.21277 * 119.99924 * 179.97438 * 15 14 13 17 17 C 1.50700 * 120.00098 * 359.95552 * 15 14 13 18 18 S 1.81000 * 109.46842 * 180.02562 * 17 15 14 19 19 C 1.76208 * 99.99548 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00286 * 0.02562 * 19 18 17 21 21 C 1.38798 * 119.99499 * 179.97438 * 19 18 17 22 22 N 1.31627 * 120.00519 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99828 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47226 * 89.99719 * 23 21 19 25 25 H 1.48497 * 109.47256 * 209.99966 * 23 21 19 26 26 H 1.48501 * 109.46901 * 330.00041 * 23 21 19 27 27 C 1.47419 * 108.70553 * 358.91048 * 14 13 12 28 28 H 1.08996 * 109.47556 * 299.99909 * 1 2 3 29 29 H 1.09005 * 109.47010 * 59.99836 * 1 2 3 30 30 H 1.09006 * 109.47232 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47375 * 239.99647 * 2 1 3 32 32 H 1.09005 * 109.47010 * 120.00163 * 2 1 3 33 33 H 1.08995 * 109.47315 * 305.00209 * 3 2 1 34 34 H 1.08995 * 109.47527 * 177.28557 * 4 3 2 35 35 H 1.09006 * 109.47298 * 297.28590 * 4 3 2 36 36 H 1.09004 * 109.46611 * 62.58273 * 5 4 3 37 37 H 1.08999 * 109.47509 * 182.57803 * 5 4 3 38 38 H 1.08994 * 109.47424 * 302.58317 * 5 4 3 39 39 H 1.08994 * 109.46996 * 55.29160 * 6 3 2 40 40 H 1.09001 * 109.46983 * 295.29801 * 6 3 2 41 41 H 1.09005 * 109.46963 * 65.57515 * 8 7 6 42 42 H 1.09000 * 109.47391 * 185.57351 * 8 7 6 43 43 H 1.09000 * 109.47279 * 305.58006 * 8 7 6 44 44 H 1.08996 * 109.47348 * 44.73883 * 9 7 6 45 45 H 1.08998 * 109.47509 * 164.74045 * 9 7 6 46 46 H 1.09002 * 110.71813 * 271.93854 * 12 10 9 47 47 H 1.08999 * 110.72238 * 35.20952 * 12 10 9 48 48 H 1.08997 * 109.89924 * 218.42014 * 13 12 10 49 49 H 1.08998 * 109.97578 * 97.34345 * 13 12 10 50 50 H 1.09007 * 109.47148 * 300.00299 * 17 15 14 51 51 H 1.08995 * 109.47104 * 60.00044 * 17 15 14 52 52 H 0.96998 * 120.00554 * 180.02562 * 22 21 19 53 53 H 1.09004 * 110.36399 * 265.29158 * 27 14 13 54 54 H 1.08993 * 110.37181 * 142.96766 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6353 2.1265 1.3074 5 6 2.1887 1.3314 2.4916 6 6 3.5648 1.4443 -0.1257 7 7 4.0452 2.8278 -0.2389 8 6 3.5904 3.4420 -1.4935 9 6 5.5084 2.8882 -0.1234 10 6 5.9127 2.6979 1.3400 11 1 5.5521 1.7428 1.7217 12 6 7.4497 2.8213 1.5128 13 6 7.5961 3.2872 2.9772 14 7 6.3216 3.9073 3.3678 15 6 6.0381 4.4231 4.5803 16 8 4.9487 4.9125 4.7915 17 6 7.0747 4.3914 5.6738 18 16 6.3972 5.1529 7.1695 19 6 7.7780 4.9840 8.2510 20 1 8.6860 4.5172 7.8988 21 6 7.6991 5.4518 9.5554 22 7 6.5927 6.0211 9.9847 23 14 9.1631 5.2734 10.7018 24 1 10.0306 6.4732 10.5873 25 1 8.6832 5.1413 12.1009 26 1 9.9396 4.0638 10.3285 27 6 5.4053 3.8723 2.2134 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6054 1.9815 -0.8417 34 1 2.0397 3.1384 1.3284 35 1 0.5481 2.1682 1.3742 36 1 3.2780 1.3284 2.4499 37 1 1.8621 1.7928 3.4235 38 1 1.8206 0.3065 2.4451 39 1 3.8568 0.8844 -1.0141 40 1 4.0027 0.9787 0.7573 41 1 2.5046 3.5372 -1.4787 42 1 4.0403 4.4292 -1.5988 43 1 3.8887 2.8152 -2.3339 44 1 5.9536 2.0989 -0.7290 45 1 5.8609 3.8580 -0.4745 46 1 7.9332 1.8557 1.3645 47 1 7.8562 3.5663 0.8288 48 1 8.4025 4.0162 3.0557 49 1 7.8052 2.4326 3.6207 50 1 7.3486 3.3576 5.8848 51 1 7.9582 4.9431 5.3529 52 1 6.5376 6.3484 10.8961 53 1 5.4589 4.8088 1.6582 54 1 4.3842 3.6848 2.5451 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713747480.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:18 Heat of formation + Delta-G solvation = -70.953871 kcal Electronic energy + Delta-G solvation = -28575.625127 eV Core-core repulsion = 24865.027470 eV Total energy + Delta-G solvation = -3710.597657 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.208 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.09375 -39.78314 -38.42160 -36.57549 -34.59520 -33.38308 -31.98203 -30.84900 -30.33730 -29.27391 -27.77246 -27.27534 -25.74085 -24.54371 -24.05977 -22.44191 -21.05647 -20.65353 -19.71236 -19.55338 -18.02335 -17.53782 -16.89197 -16.88806 -16.65338 -16.34736 -16.00021 -15.92080 -15.73950 -15.43854 -14.65981 -14.57518 -14.31980 -14.30658 -14.09774 -13.79968 -13.78966 -13.54018 -13.37053 -13.23947 -13.15731 -13.03550 -12.89307 -12.81069 -12.65318 -12.61768 -12.48294 -12.20721 -12.04422 -11.85736 -11.76242 -11.72142 -11.48837 -11.25826 -11.14877 -11.08975 -11.07796 -10.94556 -10.29225 -9.65220 -9.12740 -8.69231 -8.35068 -6.14238 1.24199 1.42365 1.45020 1.56243 1.58113 2.13882 2.26904 2.94584 2.98758 3.25820 3.60922 3.66021 3.79174 3.93524 3.95975 4.00435 4.12374 4.20228 4.33701 4.36033 4.40970 4.43033 4.44761 4.52085 4.53676 4.57752 4.62479 4.68940 4.73536 4.76167 4.79208 4.84429 4.90179 4.92413 4.96256 4.99209 5.02420 5.10363 5.14292 5.15645 5.19575 5.32434 5.34919 5.37565 5.40653 5.44146 5.46116 5.53811 5.67815 6.19131 6.22095 6.23092 6.43984 7.05554 7.14181 8.74347 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.016564 B = 0.002229 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.999896 B =12555.874288 C =13529.211150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.077 4.077 4 C -0.106 4.106 5 C -0.149 4.149 6 C 0.061 3.939 7 N -0.555 5.555 8 C 0.027 3.973 9 C 0.072 3.928 10 C -0.083 4.083 11 H 0.080 0.920 12 C -0.112 4.112 13 C 0.089 3.911 14 N -0.620 5.620 15 C 0.543 3.457 16 O -0.569 6.569 17 C -0.118 4.118 18 S -0.153 6.153 19 C -0.545 4.545 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 1.001 2.999 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.257 1.257 27 C 0.126 3.874 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.029 0.971 38 H 0.064 0.936 39 H 0.040 0.960 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.032 0.968 44 H 0.058 0.942 45 H 0.083 0.917 46 H 0.108 0.892 47 H 0.094 0.906 48 H 0.077 0.923 49 H 0.074 0.926 50 H 0.104 0.896 51 H 0.105 0.895 52 H 0.271 0.729 53 H 0.061 0.939 54 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.749 -13.894 -28.806 32.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.095 4.095 4 C -0.144 4.144 5 C -0.206 4.206 6 C -0.067 4.067 7 N -0.279 5.279 8 C -0.121 4.121 9 C -0.056 4.056 10 C -0.103 4.103 11 H 0.098 0.902 12 C -0.150 4.150 13 C -0.033 4.033 14 N -0.354 5.354 15 C 0.331 3.669 16 O -0.448 6.448 17 C -0.269 4.269 18 S 0.074 5.926 19 C -0.693 4.693 20 H 0.101 0.899 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.822 3.178 24 H -0.192 1.192 25 H -0.202 1.202 26 H -0.181 1.181 27 C 0.003 3.997 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.049 0.951 38 H 0.083 0.917 39 H 0.058 0.942 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.051 0.949 44 H 0.076 0.924 45 H 0.101 0.899 46 H 0.126 0.874 47 H 0.112 0.888 48 H 0.095 0.905 49 H 0.093 0.907 50 H 0.122 0.878 51 H 0.123 0.877 52 H 0.080 0.920 53 H 0.080 0.920 54 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.653 -12.793 -27.922 30.930 hybrid contribution 1.827 -0.625 0.356 1.963 sum -1.827 -13.418 -27.566 30.713 Atomic orbital electron populations 1.21782 0.95687 1.01710 1.01738 1.21593 0.96165 0.95859 1.02185 1.21139 0.94612 0.96174 0.97622 1.21356 0.99627 0.99228 0.94172 1.21819 1.00822 1.00451 0.97547 1.22246 0.95348 0.88407 1.00706 1.61864 1.11041 1.18715 1.36257 1.22398 1.01394 0.99213 0.89121 1.22025 0.87229 1.02392 0.93920 1.22294 0.95552 0.97272 0.95147 0.90198 1.22691 0.94867 1.03925 0.93501 1.22363 0.85013 0.98075 0.97878 1.48542 1.17412 1.59128 1.10353 1.19784 0.87516 0.77148 0.82471 1.90682 1.25876 1.46695 1.81546 1.23290 1.01028 1.05561 0.97012 1.85611 1.23925 1.78085 1.04954 1.23181 1.00759 1.46019 0.99327 0.89919 1.26168 1.00215 0.93778 0.99096 1.70189 1.28444 1.38015 1.18152 0.84925 0.77018 0.79315 0.76533 1.19210 1.20230 1.18107 1.22146 0.93244 0.99007 0.85257 0.93139 0.92613 0.92417 0.91493 0.91790 0.91061 0.92686 0.92660 0.93233 0.95135 0.91720 0.94204 0.90995 0.91498 0.91314 0.94910 0.92403 0.89880 0.87370 0.88783 0.90486 0.90732 0.87770 0.87681 0.91959 0.92025 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.67 71.98 0.70 -1.15 16 2 C -0.12 -1.47 5.13 30.59 0.16 -1.31 16 3 C -0.08 -1.07 2.08 -10.80 -0.02 -1.10 16 4 C -0.11 -2.01 5.31 30.59 0.16 -1.85 16 5 C -0.15 -3.14 9.22 71.98 0.66 -2.48 16 6 C 0.06 0.81 4.00 86.30 0.35 1.15 16 7 N -0.55 -7.93 3.88 -922.46 -3.58 -11.50 16 8 C 0.03 0.31 9.24 127.69 1.18 1.49 16 9 C 0.07 0.87 4.45 86.31 0.38 1.25 16 10 C -0.08 -1.29 3.05 -9.40 -0.03 -1.32 16 11 H 0.08 1.34 6.82 -2.39 -0.02 1.32 16 12 C -0.11 -1.33 6.42 31.80 0.20 -1.13 16 13 C 0.09 1.74 6.49 86.74 0.56 2.30 16 14 N -0.62 -18.45 3.33 -811.74 -2.70 -21.15 16 15 C 0.54 22.41 7.87 87.66 0.69 23.10 16 16 O -0.57 -28.99 16.12 -3.02 -0.05 -29.04 16 17 C -0.12 -5.03 5.35 71.24 0.38 -4.65 16 18 S -0.15 -8.85 20.57 -56.49 -1.16 -10.01 16 19 C -0.55 -31.84 9.50 67.95 0.65 -31.20 16 20 H 0.08 4.48 7.80 -2.91 -0.02 4.45 16 21 C 0.01 0.70 5.49 84.86 0.47 1.17 16 22 N -0.91 -57.01 13.22 21.65 0.29 -56.72 16 23 Si 1.00 44.15 29.55 68.60 2.03 46.17 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 25 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 26 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 27 C 0.13 3.18 6.18 86.86 0.54 3.72 16 28 H 0.05 0.70 6.63 -2.39 -0.02 0.69 16 29 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.84 6.05 -2.38 -0.01 0.83 16 33 H 0.07 0.98 6.46 -2.39 -0.02 0.96 16 34 H 0.05 1.27 7.67 -2.39 -0.02 1.25 16 35 H 0.05 1.03 6.70 -2.38 -0.02 1.01 16 36 H 0.05 1.08 6.53 -2.39 -0.02 1.07 16 37 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.06 1.16 6.13 -2.39 -0.01 1.15 16 39 H 0.04 0.46 8.07 -2.39 -0.02 0.44 16 40 H 0.07 1.08 4.82 -2.39 -0.01 1.07 16 41 H 0.07 0.83 6.64 -2.38 -0.02 0.81 16 42 H 0.07 0.78 7.84 -2.39 -0.02 0.76 16 43 H 0.03 0.32 8.07 -2.39 -0.02 0.30 16 44 H 0.06 0.53 8.01 -2.39 -0.02 0.51 16 45 H 0.08 0.92 7.73 -2.39 -0.02 0.91 16 46 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.09 0.87 8.04 -2.39 -0.02 0.85 16 48 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.10 4.06 8.14 -2.39 -0.02 4.04 16 51 H 0.10 4.08 8.14 -2.40 -0.02 4.06 16 52 H 0.27 15.71 8.31 -92.71 -0.77 14.93 16 53 H 0.06 1.57 8.02 -2.39 -0.02 1.55 16 54 H 0.05 1.68 8.04 -2.39 -0.02 1.66 16 Total: -1.00 -77.77 425.09 2.69 -75.08 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.85 Total: 19.17 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: 7.02 Total: -11.99 kcal Atomic # 7 Polarization: -83.38 SS G_CDS: -5.99 Total: -89.37 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -0.05 Total: -29.04 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: -8.85 SS G_CDS: -1.16 Total: -10.01 kcal Total: -77.77 2.69 -75.08 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713747480.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.124 kcal (2) G-P(sol) polarization free energy of solvation -77.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds