Wall clock time and date at job start Wed Apr 1 2020 02:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47013 * 2 1 4 4 H 1.09000 * 109.46986 * 302.96457 * 3 2 1 5 5 C 1.53002 * 109.47016 * 182.96900 * 3 2 1 6 6 N 1.46496 * 109.47320 * 185.00340 * 5 3 2 7 7 C 1.34774 * 120.00316 * 180.02562 * 6 5 3 8 8 O 1.21281 * 120.00085 * 359.97438 * 7 6 5 9 9 C 1.50704 * 120.00201 * 179.72296 * 7 6 5 10 10 N 1.46890 * 109.47120 * 180.27568 * 9 7 6 11 11 C 1.47021 * 110.99946 * 293.63192 * 10 9 7 12 12 C 1.53098 * 109.25673 * 177.61292 * 11 10 9 13 13 O 1.43008 * 109.26260 * 56.84881 * 12 11 10 14 14 C 1.43015 * 113.73906 * 301.32808 * 13 12 11 15 15 C 1.47017 * 110.99972 * 169.99994 * 10 9 7 16 16 N 1.46895 * 109.47021 * 62.96777 * 3 2 1 17 17 C 1.46906 * 111.00114 * 65.52187 * 16 3 2 18 18 C 1.50699 * 109.47313 * 182.18330 * 17 16 3 19 19 O 1.21295 * 119.99465 * 359.97438 * 18 17 16 20 20 N 1.34768 * 119.99999 * 179.97438 * 18 17 16 21 21 C 1.37102 * 119.99917 * 179.97438 * 20 18 17 22 22 H 1.08001 * 119.99904 * 359.97438 * 21 20 18 23 23 C 1.38947 * 119.99881 * 180.02562 * 21 20 18 24 24 N 1.31416 * 120.00356 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99863 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47093 * 59.99988 * 25 23 21 27 27 H 1.48497 * 109.47100 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.46919 * 299.99815 * 25 23 21 29 29 H 1.08995 * 109.47294 * 54.77992 * 1 2 3 30 30 H 1.09003 * 109.46878 * 174.77630 * 1 2 3 31 31 H 1.09000 * 109.47055 * 294.77543 * 1 2 3 32 32 H 1.09007 * 109.46895 * 240.00368 * 2 1 3 33 33 H 1.09001 * 109.47135 * 120.00211 * 2 1 3 34 34 H 1.08999 * 109.47632 * 64.99806 * 5 3 2 35 35 H 1.09008 * 109.46701 * 304.99891 * 5 3 2 36 36 H 0.97003 * 119.99403 * 359.97438 * 6 5 3 37 37 H 1.09003 * 109.47046 * 300.27649 * 9 7 6 38 38 H 1.09003 * 109.46856 * 60.26970 * 9 7 6 39 39 H 1.09004 * 109.50362 * 297.54209 * 11 10 9 40 40 H 1.08998 * 109.50320 * 57.67660 * 11 10 9 41 41 H 1.09002 * 109.50475 * 296.91208 * 12 11 10 42 42 H 1.08999 * 109.54014 * 176.81012 * 12 11 10 43 43 H 1.08995 * 109.51160 * 298.73678 * 14 13 12 44 44 H 1.08995 * 109.54409 * 178.62536 * 14 13 12 45 45 H 1.09002 * 109.50587 * 302.32301 * 15 10 9 46 46 H 1.09000 * 109.50798 * 62.41300 * 15 10 9 47 47 H 1.00901 * 111.00049 * 189.46908 * 16 3 2 48 48 H 1.09006 * 109.46861 * 302.18369 * 17 16 3 49 49 H 1.09001 * 109.46814 * 62.18045 * 17 16 3 50 50 H 0.96995 * 120.00109 * 0.02562 * 20 18 17 51 51 H 0.96996 * 120.00192 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6339 1.9714 -0.8622 5 6 3.5682 1.4432 -0.0747 6 7 4.0624 2.8170 0.0455 7 6 5.3870 3.0625 0.0059 8 8 6.1699 2.1461 -0.1287 9 6 5.8951 4.4765 0.1233 10 7 7.3620 4.4777 0.0457 11 6 7.9518 3.8032 1.2113 12 6 9.4751 3.7747 1.0607 13 8 9.9591 5.1116 0.9066 14 6 9.4057 5.7979 -0.2195 15 6 7.8817 5.8470 -0.0820 16 7 1.6097 2.1139 1.2336 17 6 2.2440 1.5076 2.4118 18 6 1.7388 2.1856 3.6592 19 8 0.9303 3.0859 3.5750 20 7 2.1854 1.7918 4.8682 21 6 1.7262 2.4091 6.0030 22 1 1.0069 3.2112 5.9280 23 6 2.1870 2.0034 7.2495 24 7 3.0627 1.0277 7.3408 25 14 1.5607 2.8440 8.7958 26 1 0.0878 2.6792 8.8868 27 1 2.2024 2.2314 9.9866 28 1 1.8948 4.2899 8.7430 29 1 -0.3633 0.5926 -0.8395 30 1 -0.3633 -1.0234 -0.0936 31 1 -0.3633 0.4307 0.9331 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 3.8855 1.0251 -1.0300 35 1 3.9719 0.8394 0.7381 36 1 3.4362 3.5500 0.1528 37 1 5.4877 5.0776 -0.6896 38 1 5.5814 4.8971 1.0788 39 1 7.6859 4.3455 2.1187 40 1 7.5729 2.7830 1.2717 41 1 9.7432 3.1871 0.1827 42 1 9.9209 3.3264 1.9486 43 1 9.6717 5.2692 -1.1348 44 1 9.8006 6.8131 -0.2579 45 1 7.4515 6.3186 -0.9656 46 1 7.6140 6.4221 0.8044 47 1 1.7984 3.1042 1.1910 48 1 1.9989 0.4461 2.4505 49 1 3.3252 1.6285 2.3449 50 1 2.8323 1.0722 4.9355 51 1 3.3841 0.7443 8.2109 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715062081.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:44 Heat of formation + Delta-G solvation = -105.373663 kcal Electronic energy + Delta-G solvation = -30889.020180 eV Core-core repulsion = 26630.636755 eV Total energy + Delta-G solvation = -4258.383425 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.40357 -39.39847 -38.51981 -37.31148 -35.66800 -34.13089 -33.90065 -32.00230 -31.38280 -31.21964 -29.98964 -28.31187 -26.61236 -25.21416 -24.25209 -24.23450 -23.07173 -20.79853 -20.62236 -20.13706 -19.10964 -17.94736 -17.44770 -16.97857 -16.81834 -16.30487 -15.86957 -15.85953 -15.47374 -15.29106 -15.06146 -14.72286 -14.48181 -14.31870 -14.13571 -13.97827 -13.71875 -13.53292 -13.39362 -13.31685 -12.75397 -12.50747 -12.32109 -12.19021 -11.94484 -11.72778 -11.60449 -11.54115 -11.46799 -11.29282 -11.03897 -10.89120 -10.81121 -10.60989 -10.46688 -10.23997 -10.15051 -9.70728 -9.52777 -9.21942 -8.66560 -8.53424 -8.13220 -7.99182 -6.44148 -3.85462 2.51264 2.79963 3.17621 3.23911 3.27790 3.54764 3.69603 3.87221 4.05807 4.28414 4.48102 4.60556 4.63510 4.74056 4.82192 4.88021 4.91648 4.99230 5.08857 5.11319 5.12610 5.16101 5.23247 5.30134 5.34001 5.43156 5.49244 5.52494 5.57115 5.72618 5.73789 5.75618 5.78056 5.88085 5.96038 6.05741 6.19152 6.26619 6.27817 6.50743 6.52389 6.62925 6.91936 7.09719 7.30536 7.50894 7.52134 8.02781 8.09821 8.57881 9.14815 9.51194 10.02302 10.73342 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.007406 B = 0.003150 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3779.858912 B = 8887.268648 C =11804.705451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C 0.077 3.923 4 H 0.089 0.911 5 C 0.082 3.918 6 N -0.730 5.730 7 C 0.517 3.483 8 O -0.523 6.523 9 C 0.034 3.966 10 N -0.519 5.519 11 C 0.010 3.990 12 C 0.067 3.933 13 O -0.388 6.388 14 C 0.066 3.934 15 C 0.016 3.984 16 N -0.652 5.652 17 C 0.044 3.956 18 C 0.440 3.560 19 O -0.585 6.585 20 N -0.563 5.563 21 C -0.301 4.301 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.398 0.602 37 H 0.105 0.895 38 H 0.069 0.931 39 H 0.041 0.959 40 H 0.106 0.894 41 H 0.061 0.939 42 H 0.099 0.901 43 H 0.059 0.941 44 H 0.098 0.902 45 H 0.087 0.913 46 H 0.046 0.954 47 H 0.344 0.656 48 H 0.089 0.911 49 H 0.046 0.954 50 H 0.392 0.608 51 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.785 3.990 -17.947 19.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C -0.034 4.034 4 H 0.107 0.893 5 C -0.044 4.044 6 N -0.384 5.384 7 C 0.302 3.698 8 O -0.398 6.398 9 C -0.098 4.098 10 N -0.244 5.244 11 C -0.117 4.117 12 C -0.010 4.010 13 O -0.306 6.306 14 C -0.012 4.012 15 C -0.112 4.112 16 N -0.284 5.284 17 C -0.088 4.088 18 C 0.226 3.774 19 O -0.469 6.469 20 N -0.199 5.199 21 C -0.431 4.431 22 H 0.120 0.880 23 C -0.178 4.178 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.209 1.209 28 H -0.199 1.199 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.233 0.767 37 H 0.124 0.876 38 H 0.087 0.913 39 H 0.060 0.940 40 H 0.124 0.876 41 H 0.079 0.921 42 H 0.117 0.883 43 H 0.078 0.922 44 H 0.116 0.884 45 H 0.105 0.895 46 H 0.064 0.936 47 H 0.164 0.836 48 H 0.107 0.893 49 H 0.064 0.936 50 H 0.225 0.775 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.598 3.290 -18.144 19.944 hybrid contribution 0.215 0.916 1.409 1.695 sum 7.813 4.206 -16.735 18.942 Atomic orbital electron populations 1.21617 0.94594 1.00592 1.03087 1.21503 0.97363 0.94293 1.01992 1.21985 0.90350 0.97233 0.93866 0.89337 1.22180 0.96448 0.83044 1.02684 1.45956 1.07247 1.09849 1.75343 1.20418 0.82052 0.91111 0.76214 1.90672 1.55224 1.46149 1.47732 1.21993 0.89591 0.94940 1.03234 1.61898 1.04150 1.16491 1.41902 1.23002 0.96111 1.01928 0.90689 1.22654 0.92363 0.83599 1.02365 1.87980 1.67258 1.27090 1.48299 1.22621 0.91296 0.97702 0.89538 1.22841 0.97013 0.89377 1.01959 1.60213 1.60880 1.07360 0.99944 1.21772 0.96510 1.00049 0.90500 1.19793 0.86211 0.87103 0.84318 1.90519 1.36801 1.33059 1.86518 1.41860 1.39730 1.33662 1.04644 1.19639 1.23629 1.16662 0.83145 0.88000 1.25262 0.96523 0.96684 0.99374 1.69603 1.30658 1.27850 1.26060 0.85929 0.78993 0.79212 0.80158 1.19853 1.20939 1.19939 0.93198 0.93528 0.91027 0.91803 0.91479 0.91158 0.90897 0.76707 0.87649 0.91323 0.94050 0.87586 0.92073 0.88291 0.92237 0.88423 0.89515 0.93616 0.83627 0.89323 0.93613 0.77522 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.71 37.16 0.36 -1.21 16 2 C -0.11 -1.18 5.28 -26.73 -0.14 -1.32 16 3 C 0.08 0.81 2.73 -67.71 -0.18 0.62 16 4 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 5 C 0.08 0.90 4.47 -4.04 -0.02 0.88 16 6 N -0.73 -7.65 5.31 -60.29 -0.32 -7.97 16 7 C 0.52 6.31 7.54 -10.98 -0.08 6.22 16 8 O -0.52 -8.19 14.35 5.56 0.08 -8.11 16 9 C 0.03 0.33 5.45 -4.98 -0.03 0.30 16 10 N -0.52 -5.71 4.46 -235.74 -1.05 -6.76 16 11 C 0.01 0.12 5.29 -3.71 -0.02 0.11 16 12 C 0.07 0.73 7.01 37.21 0.26 0.99 16 13 O -0.39 -4.48 10.83 -35.23 -0.38 -4.86 16 14 C 0.07 0.58 7.01 37.21 0.26 0.84 16 15 C 0.02 0.14 5.65 -3.71 -0.02 0.12 16 16 N -0.65 -9.13 5.38 -107.99 -0.58 -9.71 16 17 C 0.04 0.73 5.32 -4.97 -0.03 0.71 16 18 C 0.44 10.03 7.82 -10.99 -0.09 9.94 16 19 O -0.58 -15.25 15.83 5.54 0.09 -15.16 16 20 N -0.56 -14.05 5.29 -10.96 -0.06 -14.11 16 21 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 22 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 23 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 24 N -0.90 -24.43 13.05 55.50 0.72 -23.70 16 25 Si 0.93 20.94 29.55 -169.99 -5.02 15.91 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.99 7.85 -51.93 -0.41 0.58 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.76 6.36 -51.93 -0.33 0.43 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.93 6.69 -51.92 -0.35 0.59 16 36 H 0.40 3.50 7.23 -40.82 -0.30 3.21 16 37 H 0.11 0.77 8.04 -51.93 -0.42 0.36 16 38 H 0.07 0.67 8.12 -51.93 -0.42 0.24 16 39 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.11 1.47 5.88 -51.93 -0.31 1.16 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.09 0.59 8.09 -51.93 -0.42 0.17 16 46 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.34 4.80 7.24 -39.29 -0.28 4.51 16 48 H 0.09 1.41 6.30 -51.93 -0.33 1.08 16 49 H 0.05 0.73 6.41 -51.93 -0.33 0.40 16 50 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 51 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 404.94 15.07 6.10 6.10 Total: -1.00 -33.30 404.94 -8.76 -42.06 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: -8.37 Total: 16.02 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: 0.03 Total: 10.28 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: -1.29 Total: -62.25 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.21 Total: -28.13 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.30 -8.76 -42.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715062081.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.312 kcal (2) G-P(sol) polarization free energy of solvation -33.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds