Wall clock time and date at job start Wed Apr 1 2020 02:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47013 * 2 1 4 4 H 1.09000 * 109.46986 * 302.96457 * 3 2 1 5 5 C 1.53002 * 109.47016 * 182.96900 * 3 2 1 6 6 N 1.46496 * 109.47320 * 185.00340 * 5 3 2 7 7 C 1.34774 * 120.00316 * 180.02562 * 6 5 3 8 8 O 1.21281 * 120.00085 * 359.97438 * 7 6 5 9 9 C 1.50704 * 120.00201 * 179.72296 * 7 6 5 10 10 N 1.46890 * 109.47120 * 180.27568 * 9 7 6 11 11 C 1.47021 * 110.99946 * 293.63192 * 10 9 7 12 12 C 1.53098 * 109.25673 * 177.61292 * 11 10 9 13 13 O 1.43008 * 109.26260 * 56.84881 * 12 11 10 14 14 C 1.43015 * 113.73906 * 301.32808 * 13 12 11 15 15 C 1.47017 * 110.99972 * 169.99994 * 10 9 7 16 16 N 1.46895 * 109.47021 * 62.96777 * 3 2 1 17 17 C 1.46906 * 111.00114 * 65.52187 * 16 3 2 18 18 C 1.50699 * 109.47313 * 182.18330 * 17 16 3 19 19 O 1.21295 * 119.99465 * 359.97438 * 18 17 16 20 20 N 1.34768 * 119.99999 * 179.97438 * 18 17 16 21 21 C 1.37102 * 119.99917 * 179.97438 * 20 18 17 22 22 H 1.08001 * 119.99904 * 359.97438 * 21 20 18 23 23 C 1.38947 * 119.99881 * 180.02562 * 21 20 18 24 24 N 1.31416 * 120.00356 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99863 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47093 * 59.99988 * 25 23 21 27 27 H 1.48497 * 109.47100 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.46919 * 299.99815 * 25 23 21 29 29 H 1.08995 * 109.47294 * 54.77992 * 1 2 3 30 30 H 1.09003 * 109.46878 * 174.77630 * 1 2 3 31 31 H 1.09000 * 109.47055 * 294.77543 * 1 2 3 32 32 H 1.09007 * 109.46895 * 240.00368 * 2 1 3 33 33 H 1.09001 * 109.47135 * 120.00211 * 2 1 3 34 34 H 1.08999 * 109.47632 * 64.99806 * 5 3 2 35 35 H 1.09008 * 109.46701 * 304.99891 * 5 3 2 36 36 H 0.97003 * 119.99403 * 359.97438 * 6 5 3 37 37 H 1.09003 * 109.47046 * 300.27649 * 9 7 6 38 38 H 1.09003 * 109.46856 * 60.26970 * 9 7 6 39 39 H 1.09004 * 109.50362 * 297.54209 * 11 10 9 40 40 H 1.08998 * 109.50320 * 57.67660 * 11 10 9 41 41 H 1.09002 * 109.50475 * 296.91208 * 12 11 10 42 42 H 1.08999 * 109.54014 * 176.81012 * 12 11 10 43 43 H 1.08995 * 109.51160 * 298.73678 * 14 13 12 44 44 H 1.08995 * 109.54409 * 178.62536 * 14 13 12 45 45 H 1.09002 * 109.50587 * 302.32301 * 15 10 9 46 46 H 1.09000 * 109.50798 * 62.41300 * 15 10 9 47 47 H 1.00901 * 111.00049 * 189.46908 * 16 3 2 48 48 H 1.09006 * 109.46861 * 302.18369 * 17 16 3 49 49 H 1.09001 * 109.46814 * 62.18045 * 17 16 3 50 50 H 0.96995 * 120.00109 * 0.02562 * 20 18 17 51 51 H 0.96996 * 120.00192 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6339 1.9714 -0.8622 5 6 3.5682 1.4432 -0.0747 6 7 4.0624 2.8170 0.0455 7 6 5.3870 3.0625 0.0059 8 8 6.1699 2.1461 -0.1287 9 6 5.8951 4.4765 0.1233 10 7 7.3620 4.4777 0.0457 11 6 7.9518 3.8032 1.2113 12 6 9.4751 3.7747 1.0607 13 8 9.9591 5.1116 0.9066 14 6 9.4057 5.7979 -0.2195 15 6 7.8817 5.8470 -0.0820 16 7 1.6097 2.1139 1.2336 17 6 2.2440 1.5076 2.4118 18 6 1.7388 2.1856 3.6592 19 8 0.9303 3.0859 3.5750 20 7 2.1854 1.7918 4.8682 21 6 1.7262 2.4091 6.0030 22 1 1.0069 3.2112 5.9280 23 6 2.1870 2.0034 7.2495 24 7 3.0627 1.0277 7.3408 25 14 1.5607 2.8440 8.7958 26 1 0.0878 2.6792 8.8868 27 1 2.2024 2.2314 9.9866 28 1 1.8948 4.2899 8.7430 29 1 -0.3633 0.5926 -0.8395 30 1 -0.3633 -1.0234 -0.0936 31 1 -0.3633 0.4307 0.9331 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 3.8855 1.0251 -1.0300 35 1 3.9719 0.8394 0.7381 36 1 3.4362 3.5500 0.1528 37 1 5.4877 5.0776 -0.6896 38 1 5.5814 4.8971 1.0788 39 1 7.6859 4.3455 2.1187 40 1 7.5729 2.7830 1.2717 41 1 9.7432 3.1871 0.1827 42 1 9.9209 3.3264 1.9486 43 1 9.6717 5.2692 -1.1348 44 1 9.8006 6.8131 -0.2579 45 1 7.4515 6.3186 -0.9656 46 1 7.6140 6.4221 0.8044 47 1 1.7984 3.1042 1.1910 48 1 1.9989 0.4461 2.4505 49 1 3.3252 1.6285 2.3449 50 1 2.8323 1.0722 4.9355 51 1 3.3841 0.7443 8.2109 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715062081.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:43 Heat of formation + Delta-G solvation = -133.600398 kcal Electronic energy + Delta-G solvation = -30890.244183 eV Core-core repulsion = 26630.636755 eV Total energy + Delta-G solvation = -4259.607429 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.32687 -40.46761 -39.92095 -38.60814 -36.51968 -35.97229 -35.02245 -33.35944 -33.00202 -32.16380 -30.87969 -29.35816 -28.02292 -26.28743 -25.81129 -25.04021 -23.94607 -21.84418 -21.54130 -21.29180 -20.53842 -19.86958 -18.48523 -18.17411 -17.77835 -17.16100 -17.04183 -16.80839 -16.76209 -16.39947 -16.07444 -15.97714 -15.88591 -15.65030 -15.38886 -15.12248 -14.81179 -14.67798 -14.42525 -14.32327 -13.98534 -13.75134 -13.48972 -13.31792 -13.14848 -13.05845 -12.88238 -12.68122 -12.45018 -12.42866 -12.31508 -12.25009 -12.14411 -11.78568 -11.60859 -11.53883 -11.49314 -11.04568 -10.60471 -10.35785 -10.15187 -10.02968 -9.49425 -9.36598 -8.47667 -5.96817 1.38310 1.40292 1.51186 1.57709 1.95053 2.04176 2.27519 2.73552 2.91158 2.95331 3.19443 3.50738 3.65581 3.74021 3.90201 3.93014 4.02798 4.07958 4.15646 4.19868 4.22325 4.30142 4.33733 4.38101 4.40485 4.46087 4.56702 4.57675 4.68506 4.70094 4.71468 4.77297 4.84009 4.95083 4.96068 4.99543 5.19926 5.35187 5.39140 5.39384 5.58223 5.69167 5.84292 5.86360 6.06639 6.13278 6.38523 6.45911 6.57798 7.11022 7.19210 7.54739 8.09276 8.69477 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.007406 B = 0.003150 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3779.858912 B = 8887.268648 C =11804.705451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.114 4.114 3 C 0.087 3.913 4 H 0.113 0.887 5 C 0.088 3.912 6 N -0.722 5.722 7 C 0.512 3.488 8 O -0.562 6.562 9 C 0.036 3.964 10 N -0.531 5.531 11 C 0.014 3.986 12 C 0.070 3.930 13 O -0.405 6.405 14 C 0.059 3.941 15 C 0.017 3.983 16 N -0.659 5.659 17 C 0.065 3.935 18 C 0.440 3.560 19 O -0.618 6.618 20 N -0.575 5.575 21 C -0.333 4.333 22 H 0.081 0.919 23 C -0.013 4.013 24 N -0.922 5.922 25 Si 0.992 3.008 26 H -0.271 1.271 27 H -0.272 1.272 28 H -0.271 1.271 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.039 0.961 32 H 0.088 0.912 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.053 0.947 36 H 0.408 0.592 37 H 0.137 0.863 38 H 0.071 0.929 39 H 0.031 0.969 40 H 0.084 0.916 41 H 0.059 0.941 42 H 0.106 0.894 43 H 0.061 0.939 44 H 0.121 0.879 45 H 0.113 0.887 46 H 0.042 0.958 47 H 0.345 0.655 48 H 0.099 0.901 49 H 0.055 0.945 50 H 0.393 0.607 51 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.706 4.745 -19.308 21.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.152 4.152 3 C -0.023 4.023 4 H 0.131 0.869 5 C -0.038 4.038 6 N -0.376 5.376 7 C 0.299 3.701 8 O -0.440 6.440 9 C -0.095 4.095 10 N -0.256 5.256 11 C -0.114 4.114 12 C -0.007 4.007 13 O -0.324 6.324 14 C -0.017 4.017 15 C -0.110 4.110 16 N -0.291 5.291 17 C -0.067 4.067 18 C 0.227 3.773 19 O -0.504 6.504 20 N -0.212 5.212 21 C -0.463 4.463 22 H 0.099 0.901 23 C -0.213 4.213 24 N -0.563 5.563 25 Si 0.815 3.185 26 H -0.196 1.196 27 H -0.197 1.197 28 H -0.196 1.196 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.245 0.755 37 H 0.155 0.845 38 H 0.089 0.911 39 H 0.049 0.951 40 H 0.102 0.898 41 H 0.077 0.923 42 H 0.124 0.876 43 H 0.080 0.920 44 H 0.139 0.861 45 H 0.131 0.869 46 H 0.060 0.940 47 H 0.165 0.835 48 H 0.117 0.883 49 H 0.073 0.927 50 H 0.227 0.773 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.505 4.052 -19.529 21.310 hybrid contribution 0.205 0.684 1.731 1.872 sum 7.710 4.736 -17.798 19.966 Atomic orbital electron populations 1.21568 0.94995 1.01151 1.01820 1.21539 0.96891 0.94123 1.02643 1.22039 0.90084 0.97431 0.92743 0.86937 1.22092 0.96339 0.83048 1.02312 1.45908 1.07066 1.10089 1.74490 1.20877 0.82133 0.91718 0.75378 1.90659 1.56215 1.47434 1.49667 1.22072 0.89153 0.93753 1.04537 1.61913 1.04775 1.17829 1.41100 1.22865 0.96884 1.00707 0.90922 1.22626 0.91699 0.83733 1.02646 1.87954 1.67727 1.27191 1.49533 1.22861 0.91449 0.98674 0.88730 1.22937 0.97017 0.88138 1.02957 1.60198 1.61046 1.07614 1.00275 1.21514 0.96727 0.99860 0.88632 1.20824 0.84835 0.86218 0.85375 1.90488 1.38124 1.34545 1.87275 1.41953 1.40250 1.33983 1.05013 1.19634 1.24516 1.17310 0.84814 0.90104 1.26045 0.96389 0.97087 1.01776 1.69675 1.31108 1.28505 1.26974 0.85006 0.78472 0.78293 0.76699 1.19609 1.19659 1.19586 0.92022 0.92605 0.94171 0.89350 0.92675 0.90368 0.92866 0.75528 0.84517 0.91129 0.95120 0.89788 0.92288 0.87604 0.92040 0.86084 0.86918 0.93956 0.83512 0.88270 0.92721 0.77328 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.71 71.98 0.70 -2.12 16 2 C -0.11 -2.13 5.28 30.59 0.16 -1.97 16 3 C 0.09 1.65 2.73 44.92 0.12 1.77 16 4 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 5 C 0.09 1.78 4.47 86.38 0.39 2.16 16 6 N -0.72 -14.05 5.31 -463.05 -2.46 -16.51 16 7 C 0.51 12.06 7.54 87.66 0.66 12.72 16 8 O -0.56 -17.61 14.35 -3.03 -0.04 -17.65 16 9 C 0.04 0.65 5.45 85.56 0.47 1.12 16 10 N -0.53 -11.15 4.46 -899.75 -4.01 -15.17 16 11 C 0.01 0.35 5.29 86.31 0.46 0.81 16 12 C 0.07 1.54 7.01 72.01 0.50 2.04 16 13 O -0.41 -9.09 10.83 -148.98 -1.61 -10.71 16 14 C 0.06 0.95 7.01 72.02 0.50 1.45 16 15 C 0.02 0.27 5.65 86.32 0.49 0.75 16 16 N -0.66 -17.69 5.38 -495.56 -2.66 -20.35 16 17 C 0.07 2.14 5.32 85.56 0.46 2.59 16 18 C 0.44 20.34 7.82 87.66 0.69 21.02 16 19 O -0.62 -32.78 15.83 -3.07 -0.05 -32.83 16 20 N -0.57 -29.39 5.29 -306.99 -1.62 -31.02 16 21 C -0.33 -18.81 9.68 84.04 0.81 -18.00 16 22 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 23 C -0.01 -0.71 5.50 84.92 0.47 -0.24 16 24 N -0.92 -50.17 13.05 21.66 0.28 -49.88 16 25 Si 0.99 42.87 29.55 68.60 2.03 44.90 16 26 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 27 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 28 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.04 1.07 7.85 -2.39 -0.02 1.05 16 32 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.05 1.18 6.36 -2.39 -0.02 1.16 16 34 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 35 H 0.05 1.32 6.69 -2.38 -0.02 1.30 16 36 H 0.41 6.38 7.23 -92.71 -0.67 5.71 16 37 H 0.14 1.60 8.04 -2.39 -0.02 1.58 16 38 H 0.07 1.29 8.12 -2.39 -0.02 1.27 16 39 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.08 2.43 5.88 -2.39 -0.01 2.42 16 41 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.11 1.17 8.09 -2.39 -0.02 1.15 16 46 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.35 9.18 7.24 -89.69 -0.65 8.53 16 48 H 0.10 3.10 6.30 -2.38 -0.02 3.09 16 49 H 0.05 1.73 6.41 -2.39 -0.02 1.71 16 50 H 0.39 19.50 7.90 -92.71 -0.73 18.76 16 51 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -73.28 404.94 -4.37 -77.65 By element: Atomic # 1 Polarization: 48.54 SS G_CDS: -1.09 Total: 47.45 kcal Atomic # 6 Polarization: 17.25 SS G_CDS: 6.87 Total: 24.12 kcal Atomic # 7 Polarization: -122.45 SS G_CDS: -10.48 Total: -132.92 kcal Atomic # 8 Polarization: -59.49 SS G_CDS: -1.71 Total: -61.19 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -73.28 -4.37 -77.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715062081.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.950 kcal (2) G-P(sol) polarization free energy of solvation -73.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds