Wall clock time and date at job start Wed Apr 1 2020 02:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47342 * 2 1 4 4 H 1.09001 * 109.47009 * 54.60058 * 3 2 1 5 5 C 1.52997 * 109.47342 * 174.60404 * 3 2 1 6 6 N 1.46493 * 109.47237 * 174.99682 * 5 3 2 7 7 C 1.34780 * 120.00175 * 180.02562 * 6 5 3 8 8 O 1.21284 * 119.99556 * 359.97438 * 7 6 5 9 9 C 1.50703 * 120.00138 * 180.02562 * 7 6 5 10 10 N 1.46902 * 109.46787 * 179.97438 * 9 7 6 11 11 C 1.47016 * 110.99832 * 293.63253 * 10 9 7 12 12 C 1.53102 * 109.25747 * 177.61158 * 11 10 9 13 13 O 1.43014 * 109.25661 * 56.84506 * 12 11 10 14 14 C 1.43014 * 113.74126 * 301.33344 * 13 12 11 15 15 C 1.47010 * 110.99870 * 170.00128 * 10 9 7 16 16 N 1.46906 * 109.47027 * 294.60717 * 3 2 1 17 17 C 1.46901 * 110.99814 * 300.92314 * 16 3 2 18 18 C 1.50692 * 109.47239 * 185.67747 * 17 16 3 19 19 O 1.21297 * 120.00053 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00418 * 179.72333 * 18 17 16 21 21 C 1.37095 * 120.00548 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99663 * 0.02562 * 21 20 18 23 23 C 1.38954 * 120.00244 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99701 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00052 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47240 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.46831 * 120.00423 * 25 23 21 28 28 H 1.48493 * 109.47426 * 240.00507 * 25 23 21 29 29 H 1.08996 * 109.47192 * 298.86685 * 1 2 3 30 30 H 1.09005 * 109.46554 * 58.86247 * 1 2 3 31 31 H 1.08996 * 109.47266 * 178.85937 * 1 2 3 32 32 H 1.08997 * 109.46756 * 239.99316 * 2 1 3 33 33 H 1.08997 * 109.46704 * 119.99760 * 2 1 3 34 34 H 1.08994 * 109.47320 * 295.00077 * 5 3 2 35 35 H 1.09008 * 109.46723 * 54.99791 * 5 3 2 36 36 H 0.97005 * 120.00269 * 0.02562 * 6 5 3 37 37 H 1.08994 * 109.47091 * 299.99797 * 9 7 6 38 38 H 1.08995 * 109.47150 * 59.99896 * 9 7 6 39 39 H 1.09002 * 109.50668 * 297.54433 * 11 10 9 40 40 H 1.08995 * 109.50784 * 57.67469 * 11 10 9 41 41 H 1.09000 * 109.50375 * 296.91732 * 12 11 10 42 42 H 1.08992 * 109.54125 * 176.80624 * 12 11 10 43 43 H 1.09004 * 109.50391 * 298.73151 * 14 13 12 44 44 H 1.09001 * 109.54156 * 178.63168 * 14 13 12 45 45 H 1.09005 * 109.50336 * 302.32312 * 15 10 9 46 46 H 1.09000 * 109.50748 * 62.40901 * 15 10 9 47 47 H 1.00897 * 110.99887 * 64.87330 * 16 3 2 48 48 H 1.09003 * 109.46892 * 65.67283 * 17 16 3 49 49 H 1.09004 * 109.47007 * 305.68019 * 17 16 3 50 50 H 0.97007 * 119.99235 * 0.02562 * 20 18 17 51 51 H 0.97002 * 119.99685 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6000 1.9834 0.8377 5 6 3.5641 1.4446 0.1356 6 7 4.0631 2.8167 0.0159 7 6 5.3852 3.0630 0.1038 8 8 6.1618 2.1487 0.2825 9 6 5.8985 4.4746 -0.0188 10 7 7.3618 4.4765 0.1113 11 6 7.7707 4.0792 1.4664 12 6 9.2993 4.0369 1.5405 13 8 9.8251 5.3139 1.1689 14 6 9.4469 5.7319 -0.1455 15 6 7.9199 5.7913 -0.2367 16 7 1.6596 2.0963 -1.2593 17 6 2.2180 1.3802 -2.4140 18 6 1.9261 2.1536 -3.6739 19 8 1.3135 3.1989 -3.6157 20 7 2.3508 1.6871 -4.8648 21 6 2.0848 2.3904 -6.0111 22 1 1.5351 3.3186 -5.9598 23 6 2.5232 1.9096 -7.2389 24 7 3.1925 0.7804 -7.3012 25 14 2.1613 2.8683 -8.8006 26 1 1.3992 4.0970 -8.4619 27 1 3.4388 3.2441 -9.4579 28 1 1.3587 2.0263 -9.7236 29 1 -0.3633 0.4961 0.8999 30 1 -0.3632 0.5314 -0.8797 31 1 -0.3633 -1.0274 -0.0205 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8428 1.0402 1.1087 35 1 3.9997 0.8294 -0.6518 36 1 3.4419 3.5480 -0.1267 37 1 5.6194 4.8795 -0.9915 38 1 5.4632 5.0892 0.7691 39 1 7.3912 4.8027 2.1879 40 1 7.3678 3.0922 1.6934 41 1 9.6759 3.2755 0.8575 42 1 9.6085 3.7981 2.5581 43 1 9.8279 5.0197 -0.8776 44 1 9.8624 6.7191 -0.3479 45 1 7.6259 6.0540 -1.2530 46 1 7.5421 6.5423 0.4571 47 1 0.6569 2.1788 -1.3353 48 1 1.7652 0.3910 -2.4816 49 1 3.2964 1.2785 -2.2916 50 1 2.8442 0.8531 -4.9109 51 1 3.4982 0.4446 -8.1584 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715062096.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:47 Heat of formation + Delta-G solvation = -106.986520 kcal Electronic energy + Delta-G solvation = -30723.318789 eV Core-core repulsion = 26464.865425 eV Total energy + Delta-G solvation = -4258.453364 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.23704 -39.28395 -38.51585 -37.30517 -35.60976 -34.10778 -33.86846 -31.82143 -31.33969 -31.17831 -29.96857 -28.32793 -26.63093 -25.15288 -24.21903 -24.19356 -23.10289 -20.67720 -20.56328 -20.03529 -19.10784 -17.93190 -17.10784 -16.85849 -16.84697 -16.25482 -15.77108 -15.67967 -15.51274 -15.22354 -14.99168 -14.77554 -14.48939 -14.29441 -14.18807 -13.92240 -13.82964 -13.52528 -13.38063 -13.14970 -12.74946 -12.38095 -12.34471 -12.21060 -11.93952 -11.80498 -11.56898 -11.52210 -11.44262 -11.37722 -11.10600 -10.88693 -10.81281 -10.76650 -10.35607 -10.23352 -10.06424 -9.58775 -9.52615 -8.95663 -8.56695 -8.52381 -8.10542 -7.96986 -6.42377 -3.83344 2.70086 3.01396 3.15362 3.26029 3.32741 3.62582 3.76615 3.89662 4.08317 4.31617 4.59164 4.64353 4.71947 4.78242 4.87131 4.94866 4.95122 5.01929 5.04227 5.14027 5.16607 5.23165 5.26044 5.30875 5.37120 5.40103 5.49577 5.55093 5.57254 5.58735 5.70920 5.73184 5.78134 5.79201 5.84722 5.96886 6.05204 6.16917 6.25448 6.51369 6.62012 6.72418 6.94914 7.11278 7.53786 7.54347 7.64392 8.05342 8.33067 8.60170 9.17118 9.53735 10.04810 10.75367 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.007957 B = 0.002909 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3517.991417 B = 9623.360522 C =12396.849642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.161 4.161 3 C 0.074 3.926 4 H 0.089 0.911 5 C 0.129 3.871 6 N -0.714 5.714 7 C 0.514 3.486 8 O -0.533 6.533 9 C 0.036 3.964 10 N -0.519 5.519 11 C 0.014 3.986 12 C 0.066 3.934 13 O -0.390 6.390 14 C 0.065 3.935 15 C 0.017 3.983 16 N -0.658 5.658 17 C 0.044 3.956 18 C 0.442 3.558 19 O -0.584 6.584 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.900 5.900 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.410 0.590 37 H 0.109 0.891 38 H 0.063 0.937 39 H 0.035 0.965 40 H 0.105 0.895 41 H 0.062 0.938 42 H 0.096 0.904 43 H 0.062 0.938 44 H 0.098 0.902 45 H 0.090 0.910 46 H 0.043 0.957 47 H 0.352 0.648 48 H 0.047 0.953 49 H 0.087 0.913 50 H 0.392 0.608 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.950 3.076 18.784 19.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C -0.037 4.037 4 H 0.107 0.893 5 C 0.004 3.996 6 N -0.367 5.367 7 C 0.299 3.701 8 O -0.410 6.410 9 C -0.095 4.095 10 N -0.244 5.244 11 C -0.114 4.114 12 C -0.011 4.011 13 O -0.308 6.308 14 C -0.012 4.012 15 C -0.111 4.111 16 N -0.291 5.291 17 C -0.089 4.089 18 C 0.227 3.773 19 O -0.468 6.468 20 N -0.200 5.200 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.542 5.542 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.246 0.754 37 H 0.128 0.872 38 H 0.081 0.919 39 H 0.054 0.946 40 H 0.123 0.877 41 H 0.080 0.920 42 H 0.114 0.886 43 H 0.080 0.920 44 H 0.116 0.884 45 H 0.108 0.892 46 H 0.061 0.939 47 H 0.173 0.827 48 H 0.065 0.935 49 H 0.105 0.895 50 H 0.225 0.775 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.986 3.261 18.588 19.799 hybrid contribution -1.325 -0.229 -0.732 1.531 sum 4.661 3.032 17.856 18.702 Atomic orbital electron populations 1.21757 0.95270 1.01992 1.02000 1.22214 0.96766 0.97988 1.03080 1.21920 0.94360 0.93538 0.93919 0.89306 1.21371 0.92836 0.83763 1.01620 1.45791 1.07259 1.10205 1.73463 1.20396 0.82207 0.90951 0.76541 1.90652 1.55719 1.46152 1.48440 1.21978 0.88810 0.94768 1.03945 1.61826 1.08220 1.27554 1.26797 1.22964 0.97120 1.02875 0.88453 1.22647 0.91969 0.85484 1.01007 1.87953 1.73715 1.36420 1.32749 1.22646 0.92886 1.00778 0.84919 1.22836 0.96522 0.89614 1.02126 1.60207 1.18045 1.51246 0.99607 1.21764 1.00967 0.95423 0.90734 1.19788 0.85290 0.87869 0.84311 1.90514 1.45123 1.24760 1.86451 1.41879 1.49603 1.23320 1.05228 1.19728 1.33502 1.06190 0.83426 0.87915 1.25266 0.96732 0.96480 0.99483 1.69622 1.37704 1.20080 1.26766 0.85813 0.78138 0.79492 0.80980 1.19235 1.20726 1.20780 0.92582 0.92437 0.92491 0.91014 0.91346 0.91456 0.91369 0.75387 0.87248 0.91897 0.94640 0.87691 0.91964 0.88591 0.92015 0.88384 0.89199 0.93876 0.82749 0.93494 0.89488 0.77531 0.91906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.71 37.16 0.36 -1.04 16 2 C -0.16 -1.54 5.17 -26.73 -0.14 -1.67 16 3 C 0.07 0.77 2.70 -67.71 -0.18 0.58 16 4 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 5 C 0.13 1.48 4.70 -4.05 -0.02 1.46 16 6 N -0.71 -8.51 5.39 -60.30 -0.32 -8.83 16 7 C 0.51 6.86 7.54 -10.98 -0.08 6.77 16 8 O -0.53 -8.79 14.35 5.55 0.08 -8.71 16 9 C 0.04 0.40 5.45 -4.97 -0.03 0.37 16 10 N -0.52 -6.16 4.46 -235.75 -1.05 -7.21 16 11 C 0.01 0.15 5.29 -3.71 -0.02 0.13 16 12 C 0.07 0.69 7.01 37.21 0.26 0.95 16 13 O -0.39 -4.44 10.83 -35.23 -0.38 -4.82 16 14 C 0.06 0.62 7.01 37.20 0.26 0.88 16 15 C 0.02 0.17 5.64 -3.72 -0.02 0.15 16 16 N -0.66 -9.10 5.36 -107.99 -0.58 -9.68 16 17 C 0.04 0.72 5.34 -4.98 -0.03 0.70 16 18 C 0.44 10.08 7.83 -10.99 -0.09 9.99 16 19 O -0.58 -15.20 15.90 5.54 0.09 -15.11 16 20 N -0.56 -14.14 5.29 -10.97 -0.06 -14.20 16 21 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 22 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.56 13.05 55.50 0.72 -23.83 16 25 Si 0.93 20.97 29.55 -169.99 -5.02 15.94 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.60 6.85 -51.93 -0.36 0.25 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.77 6.23 -51.93 -0.32 0.45 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.92 6.57 -51.92 -0.34 0.58 16 36 H 0.41 4.59 8.14 -40.82 -0.33 4.26 16 37 H 0.11 1.17 8.04 -51.93 -0.42 0.76 16 38 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 39 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.11 1.32 5.88 -51.93 -0.31 1.02 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.09 0.80 8.09 -51.93 -0.42 0.38 16 46 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.35 5.02 7.23 -39.29 -0.28 4.74 16 48 H 0.05 0.72 6.49 -51.93 -0.34 0.38 16 49 H 0.09 1.45 6.15 -51.93 -0.32 1.13 16 50 H 0.39 9.54 7.90 -40.82 -0.32 9.21 16 51 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 404.77 15.07 6.10 6.10 Total: -1.00 -33.05 404.77 -8.73 -41.78 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: -8.34 Total: 17.21 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: 0.04 Total: 11.36 kcal Atomic # 7 Polarization: -62.46 SS G_CDS: -1.29 Total: -63.75 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -0.21 Total: -28.65 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.05 -8.73 -41.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715062096.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.210 kcal (2) G-P(sol) polarization free energy of solvation -33.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds