Wall clock time and date at job start Wed Apr 1 2020 02:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47342 * 2 1 4 4 H 1.09001 * 109.47009 * 54.60058 * 3 2 1 5 5 C 1.52997 * 109.47342 * 174.60404 * 3 2 1 6 6 N 1.46493 * 109.47237 * 174.99682 * 5 3 2 7 7 C 1.34780 * 120.00175 * 180.02562 * 6 5 3 8 8 O 1.21284 * 119.99556 * 359.97438 * 7 6 5 9 9 C 1.50703 * 120.00138 * 180.02562 * 7 6 5 10 10 N 1.46902 * 109.46787 * 179.97438 * 9 7 6 11 11 C 1.47016 * 110.99832 * 293.63253 * 10 9 7 12 12 C 1.53102 * 109.25747 * 177.61158 * 11 10 9 13 13 O 1.43014 * 109.25661 * 56.84506 * 12 11 10 14 14 C 1.43014 * 113.74126 * 301.33344 * 13 12 11 15 15 C 1.47010 * 110.99870 * 170.00128 * 10 9 7 16 16 N 1.46906 * 109.47027 * 294.60717 * 3 2 1 17 17 C 1.46901 * 110.99814 * 300.92314 * 16 3 2 18 18 C 1.50692 * 109.47239 * 185.67747 * 17 16 3 19 19 O 1.21297 * 120.00053 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00418 * 179.72333 * 18 17 16 21 21 C 1.37095 * 120.00548 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99663 * 0.02562 * 21 20 18 23 23 C 1.38954 * 120.00244 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99701 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00052 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47240 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.46831 * 120.00423 * 25 23 21 28 28 H 1.48493 * 109.47426 * 240.00507 * 25 23 21 29 29 H 1.08996 * 109.47192 * 298.86685 * 1 2 3 30 30 H 1.09005 * 109.46554 * 58.86247 * 1 2 3 31 31 H 1.08996 * 109.47266 * 178.85937 * 1 2 3 32 32 H 1.08997 * 109.46756 * 239.99316 * 2 1 3 33 33 H 1.08997 * 109.46704 * 119.99760 * 2 1 3 34 34 H 1.08994 * 109.47320 * 295.00077 * 5 3 2 35 35 H 1.09008 * 109.46723 * 54.99791 * 5 3 2 36 36 H 0.97005 * 120.00269 * 0.02562 * 6 5 3 37 37 H 1.08994 * 109.47091 * 299.99797 * 9 7 6 38 38 H 1.08995 * 109.47150 * 59.99896 * 9 7 6 39 39 H 1.09002 * 109.50668 * 297.54433 * 11 10 9 40 40 H 1.08995 * 109.50784 * 57.67469 * 11 10 9 41 41 H 1.09000 * 109.50375 * 296.91732 * 12 11 10 42 42 H 1.08992 * 109.54125 * 176.80624 * 12 11 10 43 43 H 1.09004 * 109.50391 * 298.73151 * 14 13 12 44 44 H 1.09001 * 109.54156 * 178.63168 * 14 13 12 45 45 H 1.09005 * 109.50336 * 302.32312 * 15 10 9 46 46 H 1.09000 * 109.50748 * 62.40901 * 15 10 9 47 47 H 1.00897 * 110.99887 * 64.87330 * 16 3 2 48 48 H 1.09003 * 109.46892 * 65.67283 * 17 16 3 49 49 H 1.09004 * 109.47007 * 305.68019 * 17 16 3 50 50 H 0.97007 * 119.99235 * 0.02562 * 20 18 17 51 51 H 0.97002 * 119.99685 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6000 1.9834 0.8377 5 6 3.5641 1.4446 0.1356 6 7 4.0631 2.8167 0.0159 7 6 5.3852 3.0630 0.1038 8 8 6.1618 2.1487 0.2825 9 6 5.8985 4.4746 -0.0188 10 7 7.3618 4.4765 0.1113 11 6 7.7707 4.0792 1.4664 12 6 9.2993 4.0369 1.5405 13 8 9.8251 5.3139 1.1689 14 6 9.4469 5.7319 -0.1455 15 6 7.9199 5.7913 -0.2367 16 7 1.6596 2.0963 -1.2593 17 6 2.2180 1.3802 -2.4140 18 6 1.9261 2.1536 -3.6739 19 8 1.3135 3.1989 -3.6157 20 7 2.3508 1.6871 -4.8648 21 6 2.0848 2.3904 -6.0111 22 1 1.5351 3.3186 -5.9598 23 6 2.5232 1.9096 -7.2389 24 7 3.1925 0.7804 -7.3012 25 14 2.1613 2.8683 -8.8006 26 1 1.3992 4.0970 -8.4619 27 1 3.4388 3.2441 -9.4579 28 1 1.3587 2.0263 -9.7236 29 1 -0.3633 0.4961 0.8999 30 1 -0.3632 0.5314 -0.8797 31 1 -0.3633 -1.0274 -0.0205 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8428 1.0402 1.1087 35 1 3.9997 0.8294 -0.6518 36 1 3.4419 3.5480 -0.1267 37 1 5.6194 4.8795 -0.9915 38 1 5.4632 5.0892 0.7691 39 1 7.3912 4.8027 2.1879 40 1 7.3678 3.0922 1.6934 41 1 9.6759 3.2755 0.8575 42 1 9.6085 3.7981 2.5581 43 1 9.8279 5.0197 -0.8776 44 1 9.8624 6.7191 -0.3479 45 1 7.6259 6.0540 -1.2530 46 1 7.5421 6.5423 0.4571 47 1 0.6569 2.1788 -1.3353 48 1 1.7652 0.3910 -2.4816 49 1 3.2964 1.2785 -2.2916 50 1 2.8442 0.8531 -4.9109 51 1 3.4982 0.4446 -8.1584 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715062096.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:46 Heat of formation + Delta-G solvation = -134.920370 kcal Electronic energy + Delta-G solvation = -30724.530092 eV Core-core repulsion = 26464.865425 eV Total energy + Delta-G solvation = -4259.664667 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 342.210 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.19754 -40.42099 -39.87286 -38.61975 -36.49020 -35.94575 -35.06120 -33.30617 -32.78058 -32.13126 -30.88841 -29.32842 -28.07465 -26.26170 -25.77603 -25.00101 -23.93274 -21.78075 -21.50234 -21.20049 -20.51756 -19.85735 -18.31509 -18.08073 -17.71509 -17.18820 -16.99541 -16.68908 -16.58456 -16.49331 -16.03331 -15.94612 -15.87868 -15.60355 -15.37907 -15.17833 -14.90614 -14.63288 -14.46533 -14.16348 -14.03151 -13.63686 -13.53198 -13.25128 -13.13076 -13.06029 -12.89643 -12.72149 -12.40167 -12.38773 -12.28516 -12.26683 -12.11511 -11.82032 -11.67539 -11.58146 -11.49874 -10.99591 -10.54734 -10.33701 -10.00641 -9.96717 -9.40337 -9.33063 -8.46201 -5.94886 1.36480 1.41578 1.55708 1.67380 2.06469 2.10169 2.29006 2.78991 2.93451 2.99937 3.21246 3.53612 3.73085 3.79805 3.93463 3.96929 4.05353 4.14858 4.17203 4.19802 4.23985 4.29119 4.34976 4.37060 4.46469 4.48249 4.53943 4.58026 4.62336 4.73677 4.77602 4.79870 4.81718 4.85859 4.94314 4.98887 5.11621 5.25906 5.37753 5.41303 5.52979 5.78438 5.88484 5.91578 6.09015 6.14911 6.40893 6.59977 6.66271 7.13316 7.32913 7.57304 8.11860 8.71553 Molecular weight = 342.21amu Principal moments of inertia in cm(-1) A = 0.007957 B = 0.002909 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3517.991417 B = 9623.360522 C =12396.849642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.157 4.157 3 C 0.084 3.916 4 H 0.113 0.887 5 C 0.128 3.872 6 N -0.708 5.708 7 C 0.509 3.491 8 O -0.569 6.569 9 C 0.039 3.961 10 N -0.542 5.542 11 C 0.019 3.981 12 C 0.066 3.934 13 O -0.402 6.402 14 C 0.061 3.939 15 C 0.018 3.982 16 N -0.663 5.663 17 C 0.064 3.936 18 C 0.442 3.558 19 O -0.617 6.617 20 N -0.577 5.577 21 C -0.329 4.329 22 H 0.081 0.919 23 C -0.015 4.015 24 N -0.923 5.923 25 Si 0.992 3.008 26 H -0.271 1.271 27 H -0.273 1.273 28 H -0.272 1.272 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.047 0.953 36 H 0.415 0.585 37 H 0.112 0.888 38 H 0.087 0.913 39 H 0.043 0.957 40 H 0.088 0.912 41 H 0.049 0.951 42 H 0.115 0.885 43 H 0.053 0.947 44 H 0.121 0.879 45 H 0.097 0.903 46 H 0.052 0.948 47 H 0.352 0.648 48 H 0.064 0.936 49 H 0.090 0.910 50 H 0.393 0.607 51 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.611 3.577 19.727 20.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.197 4.197 3 C -0.026 4.026 4 H 0.131 0.869 5 C 0.004 3.996 6 N -0.360 5.360 7 C 0.295 3.705 8 O -0.449 6.449 9 C -0.091 4.091 10 N -0.268 5.268 11 C -0.109 4.109 12 C -0.010 4.010 13 O -0.320 6.320 14 C -0.015 4.015 15 C -0.109 4.109 16 N -0.296 5.296 17 C -0.069 4.069 18 C 0.229 3.771 19 O -0.503 6.503 20 N -0.214 5.214 21 C -0.459 4.459 22 H 0.099 0.901 23 C -0.215 4.215 24 N -0.564 5.564 25 Si 0.816 3.184 26 H -0.195 1.195 27 H -0.198 1.198 28 H -0.197 1.197 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.252 0.748 37 H 0.130 0.870 38 H 0.105 0.895 39 H 0.062 0.938 40 H 0.106 0.894 41 H 0.068 0.932 42 H 0.133 0.867 43 H 0.071 0.929 44 H 0.139 0.861 45 H 0.115 0.885 46 H 0.070 0.930 47 H 0.172 0.828 48 H 0.082 0.918 49 H 0.108 0.892 50 H 0.226 0.774 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.633 3.755 19.549 20.688 hybrid contribution -1.236 -0.391 -0.952 1.609 sum 4.397 3.364 18.596 19.403 Atomic orbital electron populations 1.21745 0.94795 1.02317 1.01975 1.22175 0.97058 0.97060 1.03361 1.21959 0.93577 0.94391 0.92658 0.86926 1.21407 0.93372 0.83329 1.01494 1.45803 1.07029 1.10554 1.72658 1.20843 0.82278 0.91568 0.75794 1.90636 1.56600 1.47388 1.50234 1.21982 0.88739 0.93539 1.04885 1.61809 1.08715 1.28948 1.27281 1.22865 0.97416 1.02112 0.88469 1.22693 0.91566 0.84991 1.01799 1.87936 1.73963 1.36598 1.33546 1.22800 0.92968 1.01725 0.84052 1.22877 0.96470 0.88847 1.02724 1.60167 1.17938 1.51665 0.99838 1.21500 1.01366 0.95238 0.88769 1.20831 0.83338 0.87513 0.85406 1.90484 1.46180 1.26402 1.87216 1.41977 1.50397 1.23450 1.05586 1.19694 1.34806 1.06293 0.85109 0.90112 1.26053 0.96134 0.97306 1.01989 1.69691 1.37988 1.20956 1.27772 0.84876 0.78223 0.78089 0.77206 1.19511 1.19818 1.19686 0.91095 0.94016 0.91984 0.92368 0.89469 0.90276 0.93437 0.74831 0.86985 0.89535 0.93834 0.89360 0.93224 0.86693 0.92898 0.86071 0.88499 0.92977 0.82791 0.91784 0.89218 0.77361 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.71 71.98 0.70 -1.74 16 2 C -0.16 -2.65 5.17 30.60 0.16 -2.49 16 3 C 0.08 1.57 2.70 44.91 0.12 1.69 16 4 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 5 C 0.13 2.79 4.70 86.38 0.41 3.19 16 6 N -0.71 -16.10 5.39 -463.07 -2.49 -18.60 16 7 C 0.51 13.33 7.54 87.66 0.66 13.99 16 8 O -0.57 -18.91 14.35 -3.04 -0.04 -18.96 16 9 C 0.04 0.83 5.45 85.56 0.47 1.30 16 10 N -0.54 -12.50 4.46 -899.79 -4.01 -16.51 16 11 C 0.02 0.42 5.29 86.32 0.46 0.88 16 12 C 0.07 1.36 7.01 72.02 0.50 1.86 16 13 O -0.40 -8.75 10.83 -148.98 -1.61 -10.36 16 14 C 0.06 1.11 7.01 72.01 0.50 1.62 16 15 C 0.02 0.34 5.64 86.31 0.49 0.82 16 16 N -0.66 -17.51 5.36 -495.58 -2.65 -20.16 16 17 C 0.06 2.09 5.34 85.55 0.46 2.54 16 18 C 0.44 20.37 7.83 87.65 0.69 21.05 16 19 O -0.62 -32.53 15.90 -3.08 -0.05 -32.58 16 20 N -0.58 -29.52 5.29 -306.99 -1.62 -31.14 16 21 C -0.33 -18.60 9.68 84.04 0.81 -17.79 16 22 H 0.08 4.84 7.16 -2.91 -0.02 4.81 16 23 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 24 N -0.92 -50.38 13.05 21.66 0.28 -50.10 16 25 Si 0.99 42.93 29.55 68.60 2.03 44.95 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 27 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 28 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.04 0.81 6.85 -2.38 -0.02 0.79 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 1.16 6.23 -2.39 -0.01 1.14 16 33 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.05 1.25 6.57 -2.38 -0.02 1.24 16 36 H 0.41 8.68 8.14 -92.70 -0.75 7.93 16 37 H 0.11 2.30 8.04 -2.39 -0.02 2.28 16 38 H 0.09 1.41 8.12 -2.39 -0.02 1.39 16 39 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.09 2.24 5.88 -2.39 -0.01 2.22 16 41 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 44 H 0.12 1.58 8.14 -2.39 -0.02 1.57 16 45 H 0.10 1.61 8.09 -2.38 -0.02 1.59 16 46 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.35 9.61 7.23 -89.70 -0.65 8.96 16 48 H 0.06 1.91 6.49 -2.39 -0.02 1.89 16 49 H 0.09 2.95 6.15 -2.38 -0.01 2.93 16 50 H 0.39 19.53 7.90 -92.70 -0.73 18.80 16 51 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -71.90 404.77 -4.46 -76.36 By element: Atomic # 1 Polarization: 51.70 SS G_CDS: -1.17 Total: 50.53 kcal Atomic # 6 Polarization: 19.68 SS G_CDS: 6.89 Total: 26.57 kcal Atomic # 7 Polarization: -126.01 SS G_CDS: -10.50 Total: -136.51 kcal Atomic # 8 Polarization: -60.20 SS G_CDS: -1.71 Total: -61.91 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Total: -71.90 -4.46 -76.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715062096.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.561 kcal (2) G-P(sol) polarization free energy of solvation -71.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds